Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Castanea_20mollissima_20[genbank_20GCA_5F000763605.1_202014-10-06] 133,589 sequences; 833,240,550 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq11477 102 7e-17 seq12926 100 2e-16 seq13269 96.9 3e-15 seq16751 91.5 1e-13 seq3441 91.5 1e-13 seq50277 82.4 7e-11 >seq11477 Length=17588 Score = 102 bits (112), Expect = 7e-17 Identities = 152/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 39073 AACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCA 39132 ||||||||||| || || || || || || ||||||||||| || || || |||| Sbjct 302 AACACCAAATGCAGAGTCGATTCCTTCTGAATGTTATAATCGGCGAGGGTGCGACCGTCC 361 Query 39133 TCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCC 39192 || | |||||| || || || || || | ||||||||| | ||| | || || |||||| Sbjct 362 TCTAACTGTTTTCCGGCGAAGATGAGCCTCTGCTGGTCCGGGGGAATGCCTTCCTTGTCC 421 Query 39193 ATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTT 39252 ||| || |||| | | | || ||| |||||| |||| ||||| || Sbjct 422 TGGATCTTGGCCTTGACATTGTCTATGGTGTCGGAGCTCTCCACCTCCAGGGTGATGGTT 481 Query 39253 TTTCCCGTCAGCGTTTTAACAAAGATTTGCATCTTT 39288 ||||| || || ||||| || ||||| ||||||||| Sbjct 482 TTTCCGGTTAGGGTTTTCACGAAGATCTGCATCTTT 517 >seq12926 Length=15191 Score = 100 bits (110), Expect = 2e-16 Identities = 154/217 (71%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 39073 AACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCA 39132 ||||||||||| || || || || || || ||||||||||| || || || |||| Sbjct 312 AACACCAAATGCAGAGTCGATTCCTTCTGAATGTTATAATCGGCGAGGGTGCGACCGTCC 371 Query 39133 TCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCC 39192 || | ||||| || || || || || | ||||||||| | ||| | || || |||||| Sbjct 372 TCCAATTGTTTACCGGCGAAGATGAGCCTCTGCTGGTCCGGGGGAATGCCTTCCTTGTCC 431 Query 39193 ATGATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACT 39251 ||| || |||| ||| | | | || ||| |||||| |||| ||||| | Sbjct 432 TGGATCTTGGCCTTGA-CGTTGTCTATGGTGTCGGAGCTCTCCACCTCCAGGGTGATGGT 490 Query 39252 TTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCTTT 39288 |||||| || || ||||| || ||||| ||||||||| Sbjct 491 TTTTCCGGTTAGGGTTTTCACGAAGATCTGCATCTTT 527 >seq13269 Length=14915 Score = 96.9 bits (106), Expect = 3e-15 Identities = 148/206 (72%), Gaps = 4/206 (2%) Strand=Plus/Minus Query 39081 ATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTG 39140 ||| || ||||||||||| || ||||| || || |||||||| || | || |||||||| Sbjct 14553 ATGCAGGGTGCTCTCTTTCTGAATATTGTAGTCAGCAAGTGTGCGACCATCCTCAAGCTG 14494 Query 39141 TTTGCCCGCAAATATAAGACGCTGCTGGTC-GGTGGGCACGCTCTCTTTGTCCATGATTT 39199 || |||||||| || || | |||||| || |||||| | | ||| |||||| ||| | Sbjct 14493 CTTTCCCGCAAAGATGAGCCTCTGCTGATCAGGTGGG-ATCCCCTCCTTGTCC-TGAATC 14436 Query 39200 TCTG-TTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCC 39258 | || || | | | | ||||| |||||| || | ||||| | || ||| Sbjct 14435 TTTGCCTTCACATTGTCGATGGTATCAGAACTCTCCACCTCAAGTGTGATTGTCTTGCCC 14376 Query 39259 GTCAGCGTTTTAACAAAGATTTGCAT 39284 ||||| || || |||||||| ||||| Sbjct 14375 GTCAGTGTCTTCACAAAGATCTGCAT 14350 >seq16751 Length=10463 Score = 91.5 bits (100), Expect = 1e-13 Identities = 172/248 (69%), Gaps = 10/248 (4%) Strand=Plus/Plus Query 39041 ACTAAAATTTATTCAAGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTT 39100 || ||||||| || || ||||| | || | ||||| || || ||| || |||| Sbjct 6734 ACAAAAATTTG--CATTCCACCTCTAAGCCGGAGCACCAGGTGAAGGGTGGATTCCTTTT 6791 Query 39101 GTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGAC 39160 | ||||| || ||||||||||| || | || ||||| |||||||| ||||| || | | Sbjct 6792 GGATATTGTAGTCGGCAAGTGTGCGACCATCTTCAAGTTGTTTGCCGGCAAAGATCAACC 6851 Query 39161 GCTGCTGGTC-GGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACC 39219 ||||||||| |||||| | | ||| ||||| ||||| ||||| | | | Sbjct 6852 TCTGCTGGTCTGGTGGG-ATACCCTCCTTGTCTTGAATTTTGGCTTTGACGTTATCAATG 6910 Query 39220 GTATC---GCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAG 39276 || || ||| ||| || |||| || || ||||||| |||| || || ||||| Sbjct 6911 GTGTCAGAGCT---CTCAACTTCCAAAGTAATGGTTTTTCCAGTCAAGGTCTTCACAAAA 6967 Query 39277 ATTTGCAT 39284 |||||||| Sbjct 6968 ATTTGCAT 6975 Score = 82.4 bits (90), Expect = 7e-11 Identities = 78/100 (78%), Gaps = 0/100 (0%) Strand=Plus/Plus Query 39093 CTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAA 39152 ||| ||||| ||||| ||||| || || || | | | || |||||||||||||| ||||| Sbjct 5872 CTCCTTTTGGATATTGTAATCAGCCAGAGTCCTTCCATCTTCAAGCTGTTTGCCTGCAAA 5931 Query 39153 TATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCC 39192 ||||| | ||||||||| | ||| | | ||| |||||| Sbjct 5932 AATAAGCCTCTGCTGGTCTGGGGGAATTCCCTCCTTGTCC 5971 >seq3441 Length=50379 Score = 91.5 bits (100), Expect = 1e-13 Identities = 151/214 (71%), Gaps = 8/214 (4%) Strand=Plus/Plus Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134 ||||||||| || ||| ||| || || || ||||| || ||||| || || |||| || Sbjct 14392 CACCAAATGGAGGGTGGACTCCTTCTGGATGTTATAGTCTGCAAGAGTACGACCGTCTTC 14451 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTC-GGTGGGCACGCTCTCTTTGTCCA 39193 ||||| ||||||||||| || | | ||| ||||| |||||| | | ||| |||||| Sbjct 14452 GAGCTGCTTGCCCGCAAAGATCAACCTCTGTTGGTCTGGTGGG-ATACCCTCCTTGTCCT 14510 Query 39194 TGATTTTCTGTTTGAGCGTCGCCACCGTATC---GCTCGACTCCACGTCCACCGTGATAC 39250 ||| || ||||| | | | ||||| ||| || || |||| || || Sbjct 14511 GGATCTTTGCTTTGACATTGTCAATGGTATCCGAGCT---TTCGACCTCCAATGTTATTG 14567 Query 39251 TTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 |||| || |||| || |||||||| |||||||| Sbjct 14568 TTTTACCTGTCAAAGTCTTAACAAAAATTTGCAT 14601 >seq50277 Length=901 Score = 82.4 bits (90), Expect = 7e-11 Identities = 78/100 (78%), Gaps = 0/100 (0%) Strand=Plus/Plus Query 39093 CTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAA 39152 ||| ||||| ||||| ||||| || || || | | | || |||||||||||||| ||||| Sbjct 721 CTCCTTTTGGATATTGTAATCAGCCAGAGTCCTTCCATCTTCAAGCTGTTTGCCTGCAAA 780 Query 39153 TATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCC 39192 ||||| | ||||||||| | ||| | | ||| |||||| Sbjct 781 AATAAGCCTCTGCTGGTCTGGGGGAATTCCCTCCTTGTCC 820 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 428846249962757