Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Castanea_20mollissima_20[genbank_20GCA_5F000763605.1_202014-10-06] 133,589 sequences; 833,240,550 total letters Query= NC_030240.1 Length=128058 Score E Sequences producing significant alignments: (Bits) Value seq16751 105 5e-18 seq50277 84.2 2e-11 seq9176 84.2 2e-11 >seq16751 Length=10463 Score = 105 bits (116), Expect = 5e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 101012 CCGCCTCGCAATCTTAACACCATGTGCAAAGTTGATTCTTTTTGAATATTGTAATCGGCC 101071 || || ||||| | | ||||| ||||| ||||| || |||||||||||||||||||| Sbjct 6293 CCACCACGCAAACGCAGCACCAAGTGCAGGGTTGACTCCTTTTGAATATTGTAATCGGCT 6352 Query 101072 ATAGTTTTGGAATCTTCCAATTGTTTGCCCGCATATATAAGCCTTTGTTGGTCTACGGGC 101131 | || | ||||||||| || ||||| ||| | || ||||| ||||||||| || Sbjct 6353 AAGGTCCTTCCATCTTCCAACTGCTTGCCAGCAAAAATCAGCCTCTGTTGGTCTGGTGGG 6412 Query 101132 ACGCCTTCTTTGTCGGCAATTTTTTGTTTCACATCGGCCACCGTCTCTGTGGACGTTGTT 101191 | || || ||||| || || ||| |||| | | || |||| | Sbjct 6413 ATACCCTCCTTGTCTTGGATCTTAGCTTTAACATTATCGATAGTATCTGAACTCTCAACC 6472 Query 101192 TCGACGGTAATAGTTTTGCCCGTCAATGTTTTAATAAAAATTTGCATT 101239 || | ||||| |||||||| ||||| || |||| ||||||||||||| Sbjct 6473 TCCAAAGTAATTGTTTTGCCAGTCAAGGTCTTAACAAAAATTTGCATT 6520 Score = 84.2 bits (92), Expect = 2e-11 Identities = 97/131 (74%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 101035 GTGCAAAGTTGATTCTTTTTGAATATTGTAATCGGCCATAGTTTTGGAATCTTCCAATTG 101094 ||||| ||| || || ||||| ||||||||||| |||| ||| | |||||| | || Sbjct 5860 GTGCAGAGTAGACTCCTTTTGGATATTGTAATCAGCCAGAGTCCTTCCATCTTCAAGCTG 5919 Query 101095 TTTGCCCGCATATATAAGCCTTTGTTGGTCTACGGGCACGCCTTCTTTGTCGGCAATTTT 101154 |||||| ||| | |||||||| || |||||| ||| | || || ||||| ||| || Sbjct 5920 TTTGCCTGCAAAAATAAGCCTCTGCTGGTCTGGGGGAATTCCCTCCTTGTCCTGAATCTT 5979 Query 101155 TTGTTTCACAT 101165 | ||| |||| Sbjct 5980 TGCTTTTACAT 5990 >seq50277 Length=901 Score = 84.2 bits (92), Expect = 2e-11 Identities = 97/131 (74%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 101035 GTGCAAAGTTGATTCTTTTTGAATATTGTAATCGGCCATAGTTTTGGAATCTTCCAATTG 101094 ||||| ||| || || ||||| ||||||||||| |||| ||| | |||||| | || Sbjct 709 GTGCAGAGTAGACTCCTTTTGGATATTGTAATCAGCCAGAGTCCTTCCATCTTCAAGCTG 768 Query 101095 TTTGCCCGCATATATAAGCCTTTGTTGGTCTACGGGCACGCCTTCTTTGTCGGCAATTTT 101154 |||||| ||| | |||||||| || |||||| ||| | || || ||||| ||| || Sbjct 769 TTTGCCTGCAAAAATAAGCCTCTGCTGGTCTGGGGGAATTCCCTCCTTGTCCTGAATCTT 828 Query 101155 TTGTTTCACAT 101165 | ||| |||| Sbjct 829 TGCTTTTACAT 839 >seq9176 Length=23001 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 101012 CCGCCTCGCAATCTTAACACCATGTGCAAAGTTGATTCTTTTTGAATATTGTAATCGGCC 101071 || || || | ||| || |||| ||| | || || || ||||| || |||||||| || Sbjct 20013 CCTCCCCGAAGTCTCAAAACCAGGTGAAGTGTCGACTCCTTTTGGATGTTGTAATCAGCA 19954 Query 101072 ATAGTTTTGGAATCTTCCAATTGTTTGCCCGCATATATAAGCCTTTGTTGGTCTACGGGC 101131 | |||| |||||||||||| ||||| ||| | || ||||| ||||||||| ||| Sbjct 19953 AGAGTTCGACCATCTTCCAATTGCTTGCCAGCAAAAATCAGCCTCTGTTGGTCTGGGGGG 19894 Query 101132 ACGCCTTCTTTGTC 101145 | ||||| ||||| Sbjct 19893 ATACCTTCCTTGTC 19880 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408993824722551