Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Castanea_20mollissima_20[genbank_20GCA_5F000763605.1_202014-10-06]
133,589 sequences; 833,240,550 total letters
Query= NC_030240.1
Length=128058
Score E
Sequences producing significant alignments: (Bits) Value
seq16751 105 5e-18
seq50277 84.2 2e-11
seq9176 84.2 2e-11
>seq16751
Length=10463
Score = 105 bits (116), Expect = 5e-18
Identities = 160/228 (70%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 101012 CCGCCTCGCAATCTTAACACCATGTGCAAAGTTGATTCTTTTTGAATATTGTAATCGGCC 101071
|| || ||||| | | ||||| ||||| ||||| || ||||||||||||||||||||
Sbjct 6293 CCACCACGCAAACGCAGCACCAAGTGCAGGGTTGACTCCTTTTGAATATTGTAATCGGCT 6352
Query 101072 ATAGTTTTGGAATCTTCCAATTGTTTGCCCGCATATATAAGCCTTTGTTGGTCTACGGGC 101131
| || | ||||||||| || ||||| ||| | || ||||| ||||||||| ||
Sbjct 6353 AAGGTCCTTCCATCTTCCAACTGCTTGCCAGCAAAAATCAGCCTCTGTTGGTCTGGTGGG 6412
Query 101132 ACGCCTTCTTTGTCGGCAATTTTTTGTTTCACATCGGCCACCGTCTCTGTGGACGTTGTT 101191
| || || ||||| || || ||| |||| | | || |||| |
Sbjct 6413 ATACCCTCCTTGTCTTGGATCTTAGCTTTAACATTATCGATAGTATCTGAACTCTCAACC 6472
Query 101192 TCGACGGTAATAGTTTTGCCCGTCAATGTTTTAATAAAAATTTGCATT 101239
|| | ||||| |||||||| ||||| || |||| |||||||||||||
Sbjct 6473 TCCAAAGTAATTGTTTTGCCAGTCAAGGTCTTAACAAAAATTTGCATT 6520
Score = 84.2 bits (92), Expect = 2e-11
Identities = 97/131 (74%), Gaps = 0/131 (0%)
Strand=Plus/Plus
Query 101035 GTGCAAAGTTGATTCTTTTTGAATATTGTAATCGGCCATAGTTTTGGAATCTTCCAATTG 101094
||||| ||| || || ||||| ||||||||||| |||| ||| | |||||| | ||
Sbjct 5860 GTGCAGAGTAGACTCCTTTTGGATATTGTAATCAGCCAGAGTCCTTCCATCTTCAAGCTG 5919
Query 101095 TTTGCCCGCATATATAAGCCTTTGTTGGTCTACGGGCACGCCTTCTTTGTCGGCAATTTT 101154
|||||| ||| | |||||||| || |||||| ||| | || || ||||| ||| ||
Sbjct 5920 TTTGCCTGCAAAAATAAGCCTCTGCTGGTCTGGGGGAATTCCCTCCTTGTCCTGAATCTT 5979
Query 101155 TTGTTTCACAT 101165
| ||| ||||
Sbjct 5980 TGCTTTTACAT 5990
>seq50277
Length=901
Score = 84.2 bits (92), Expect = 2e-11
Identities = 97/131 (74%), Gaps = 0/131 (0%)
Strand=Plus/Plus
Query 101035 GTGCAAAGTTGATTCTTTTTGAATATTGTAATCGGCCATAGTTTTGGAATCTTCCAATTG 101094
||||| ||| || || ||||| ||||||||||| |||| ||| | |||||| | ||
Sbjct 709 GTGCAGAGTAGACTCCTTTTGGATATTGTAATCAGCCAGAGTCCTTCCATCTTCAAGCTG 768
Query 101095 TTTGCCCGCATATATAAGCCTTTGTTGGTCTACGGGCACGCCTTCTTTGTCGGCAATTTT 101154
|||||| ||| | |||||||| || |||||| ||| | || || ||||| ||| ||
Sbjct 769 TTTGCCTGCAAAAATAAGCCTCTGCTGGTCTGGGGGAATTCCCTCCTTGTCCTGAATCTT 828
Query 101155 TTGTTTCACAT 101165
| ||| ||||
Sbjct 829 TGCTTTTACAT 839
>seq9176
Length=23001
Score = 84.2 bits (92), Expect = 2e-11
Identities = 99/134 (74%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 101012 CCGCCTCGCAATCTTAACACCATGTGCAAAGTTGATTCTTTTTGAATATTGTAATCGGCC 101071
|| || || | ||| || |||| ||| | || || || ||||| || |||||||| ||
Sbjct 20013 CCTCCCCGAAGTCTCAAAACCAGGTGAAGTGTCGACTCCTTTTGGATGTTGTAATCAGCA 19954
Query 101072 ATAGTTTTGGAATCTTCCAATTGTTTGCCCGCATATATAAGCCTTTGTTGGTCTACGGGC 101131
| |||| |||||||||||| ||||| ||| | || ||||| ||||||||| |||
Sbjct 19953 AGAGTTCGACCATCTTCCAATTGCTTGCCAGCAAAAATCAGCCTCTGTTGGTCTGGGGGG 19894
Query 101132 ACGCCTTCTTTGTC 101145
| ||||| |||||
Sbjct 19893 ATACCTTCCTTGTC 19880
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 408993824722551
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |