Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Castanea_20mollissima_20[genbank_20GCA_5F000763605.1_202014-10-06]
133,589 sequences; 833,240,550 total letters
Query= NC_030656.1
Length=133492
Score E
Sequences producing significant alignments: (Bits) Value
seq72010 141 8e-29
seq11270 114 1e-20
>seq72010
Length=1221
Score = 141 bits (156), Expect = 8e-29
Identities = 184/254 (72%), Gaps = 3/254 (1%)
Strand=Plus/Minus
Query 4842 TACATTTCAGAATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCT 4901
||||| ||||| || || || || || ||||| || || || ||||| | |||||||
Sbjct 975 TACATCTCAGAGTGGATGTTCTCGATCATGATCTGGAAACCATAGAAGCAACGAGCTTCT 916
Query 4902 GTTACTTGAACTTCGTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTG 4961
| |||||||||||| | |||| || | ||||| |||||||| ||||| || |
Sbjct 915 GGTACTTGAACTTCACCTGAGAATCGCTCGAGCAAGTTCTCGTTTACGATACCATCGGAG 856
Query 4962 GCTGCAAAAAACGCCAAAACATGAGATATAAAGTACTGTTCGTCAGGCTTAA---GTTTT 5018
|| || || || || | ||| ||||| |||||||| | || ||| |||| | ||
Sbjct 855 GCAGCGAAGAAGGCGAGAACGTGAGAGATAAAGTAACGCTCATCATCGTTAAGACGGTTG 796
Query 5019 TTCCAGTGGGGCAAATCTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCTTCC 5078
||||||| | | | ||| || | || ||| || |||||| ||||||| || || |||||
Sbjct 795 TTCCAGTCGTGAAGATCCTTGGATAGATCGACCTCTTCAGCAGTCCAGAAGGATGCTTCT 736
Query 5079 GCTTTTTTGTACAT 5092
||||| ||||||||
Sbjct 735 GCTTTCTTGTACAT 722
>seq11270
Length=18388
Score = 114 bits (126), Expect = 1e-20
Identities = 544/855 (64%), Gaps = 17/855 (2%)
Strand=Plus/Plus
Query 4272 ACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAATATTTTCCATAAAATCAAAC 4331
|||| ||| ||||||||||| || || |||| |||||||| ||||| |||||||
Sbjct 5212 ACTCTCTTCTCGAAGAAATTGGTCTTTCCTTGCAACGAAATCAGCTCCATCCAATCAAAT 5271
Query 4332 GGATTAGTTGCGTTGTAATGTTTTTCACACTTTAGAGCTACAAGCAATCGGTCAGCTACA 4391
|| || | ||||| ||| ||||| | || | | | | |||||| |||
Sbjct 5272 GGGTTCTGAACATTGTAGATTTTGCCACACCCCAACGCGCCCAAAAGCCTGTCAGCCACA 5331
Query 4392 AATTCTATATACTGGCTCATGAGTTCGCAGTTAATTCCAATTAATCTCACAGGT-AGCGC 4450
|| || || ||||||||||| || |||| ||| || |||| || | | |||| |||||
Sbjct 5332 AACTCGATGTACTGGCTCATCAGATCGCCGTTCATCCCAACCAA-CGCGCAGGGCAGCGC 5390
Query 4451 GTATGTCAAAAACTCTTGTTCTATAGTTACGGCTTCTGTGATTATATCTTTTATTTTATC 4510
|| || |||||| |||||| || || || | || | || | ||
Sbjct 5391 GTCGCACACAAACTCCCTCTCTATATCCACCGCGTCGCGAACGATCCCCTTCACGCGCTC 5450
Query 4511 TTTAGATGGTTTATTTACTAAGTATCCAAACAATAAACACGCAAAATCACAATGCAAACC 4570
| | || || ||| | | | ||||| ||||| || || | ||
Sbjct 5451 CTCGCTCAGCTTCTTGCGCAAGAGAGTGTAGAGCAGGCACGCGAAATCGCAGTGGAGGCC 5510
Query 4571 TTCGTCTCTGCTA-ATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTTT 4629
|||||||| || | |||| ||||| || || ||||| ||||||||||| || | |||||
Sbjct 5511 TTCGTCTC-GCGAGATCAACTCGTTGGAGAAGGTTAACCCGGGCATTAACCCGCGCTTTT 5569
Query 4630 TAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAACG 4689
| ||||||||||| ||| || || || ||||| |||||||| ||| ||| || |
Sbjct 5570 TTAGCCAAAATATCGCGCAGAAGCTACCGGAGAAGAAAATGCCTTCGACGCAGGCGAAAG 5629
Query 4690 CTA----CTAATCGGGACCCGAACGAGCTGGCTTTGTCTTTAATCCATTTTAATGCCCAG 4745
| | | |||| ||||||| || | | | ||||| | |||||
Sbjct 5630 CGATGAGCCTCTCGG----CGAACGA---TTCTCCGCCGTCGATCCACCGCAGGGCCCAC 5682
Query 4746 TTAGCTTTTTTCTTAACGCACGGAATTGTGTATATAGCGTTAAATAATTTACTTTTTTCA 4805
| || || ||| ||||| |||| || | || |||| || | | || ||
Sbjct 5683 TCGGCCTTCTTCGCCACGCAAGGAACGGTCTCCATCGCGTGGAACAGCCGGTTCTTCTCG 5742
Query 4806 AATGGGTCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATTTTCT 4865
| ||| | ||||| || || | | || || ||||||||||| || ||||| ||
Sbjct 5743 GCCGAGTCCTTGATATAGGTCTCGAGCAAGAGACTGTACATTTCAGAGTGGATATTCTCG 5802
Query 4866 ATAGCAATCTGAAATCCGTA-AAAGCATCTAGCTTCTGTTACTTGAACTTCGTTACAAAA 4924
|| |||||||| || || || ||||| | ||| || | ||||| || || || ||
Sbjct 5803 ATCGCAATCTGGAAGCCATAGAAAGC-GCGAGCCTCCGAAACTTGGACCTCCTTCATGAA 5861
Query 4925 TCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAACATG 4984
||| | | | || || || || ||||| ||| || || || || | || ||
Sbjct 5862 CCTTCCGGCCAGATTCTCCAAAACGATGCCGTCGGAGGCGGCGAAGAAGGCGAGCACGTG 5921
Query 4985 AGATATAAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCAAATCTTTAGTTAA 5044
|| | |||| | ||| | | || |||| |||||| | || || | |
Sbjct 5922 AGTGACGAAGTGCCTCTCGCCGTCGGTTAGGTTTTCCCAGTGACGTAAGTCGCCGGAGAG 5981
Query 5045 ATCAACTTCTTCAACAGTCCAAAACGACGCTTCCGCTTTTTTGTACATAGACCAAATATC 5104
||| || || || | ||||| ||||| || || || || |||||||| ||| || ||
Sbjct 5982 ATCGACCTCCTCTGCGGTCCAGAACGAGGCCTCGGCCTTCTTGTACATCTCCCAGATCTC 6041
Query 5105 AGGATACTGAATCGG 5119
|| |||||||||||
Sbjct 6042 CGGGTACTGAATCGG 6056
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 426354313740137
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |