Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Castanea_20mollissima_20[genbank_20GCA_5F000763605.1_202014-10-06] 133,589 sequences; 833,240,550 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq72010 141 8e-29 seq11270 114 1e-20 >seq72010 Length=1221 Score = 141 bits (156), Expect = 8e-29 Identities = 184/254 (72%), Gaps = 3/254 (1%) Strand=Plus/Minus Query 4842 TACATTTCAGAATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCT 4901 ||||| ||||| || || || || || ||||| || || || ||||| | ||||||| Sbjct 975 TACATCTCAGAGTGGATGTTCTCGATCATGATCTGGAAACCATAGAAGCAACGAGCTTCT 916 Query 4902 GTTACTTGAACTTCGTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTG 4961 | |||||||||||| | |||| || | ||||| |||||||| ||||| || | Sbjct 915 GGTACTTGAACTTCACCTGAGAATCGCTCGAGCAAGTTCTCGTTTACGATACCATCGGAG 856 Query 4962 GCTGCAAAAAACGCCAAAACATGAGATATAAAGTACTGTTCGTCAGGCTTAA---GTTTT 5018 || || || || || | ||| ||||| |||||||| | || ||| |||| | || Sbjct 855 GCAGCGAAGAAGGCGAGAACGTGAGAGATAAAGTAACGCTCATCATCGTTAAGACGGTTG 796 Query 5019 TTCCAGTGGGGCAAATCTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCTTCC 5078 ||||||| | | | ||| || | || ||| || |||||| ||||||| || || ||||| Sbjct 795 TTCCAGTCGTGAAGATCCTTGGATAGATCGACCTCTTCAGCAGTCCAGAAGGATGCTTCT 736 Query 5079 GCTTTTTTGTACAT 5092 ||||| |||||||| Sbjct 735 GCTTTCTTGTACAT 722 >seq11270 Length=18388 Score = 114 bits (126), Expect = 1e-20 Identities = 544/855 (64%), Gaps = 17/855 (2%) Strand=Plus/Plus Query 4272 ACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAATATTTTCCATAAAATCAAAC 4331 |||| ||| ||||||||||| || || |||| |||||||| ||||| ||||||| Sbjct 5212 ACTCTCTTCTCGAAGAAATTGGTCTTTCCTTGCAACGAAATCAGCTCCATCCAATCAAAT 5271 Query 4332 GGATTAGTTGCGTTGTAATGTTTTTCACACTTTAGAGCTACAAGCAATCGGTCAGCTACA 4391 || || | ||||| ||| ||||| | || | | | | |||||| ||| Sbjct 5272 GGGTTCTGAACATTGTAGATTTTGCCACACCCCAACGCGCCCAAAAGCCTGTCAGCCACA 5331 Query 4392 AATTCTATATACTGGCTCATGAGTTCGCAGTTAATTCCAATTAATCTCACAGGT-AGCGC 4450 || || || ||||||||||| || |||| ||| || |||| || | | |||| ||||| Sbjct 5332 AACTCGATGTACTGGCTCATCAGATCGCCGTTCATCCCAACCAA-CGCGCAGGGCAGCGC 5390 Query 4451 GTATGTCAAAAACTCTTGTTCTATAGTTACGGCTTCTGTGATTATATCTTTTATTTTATC 4510 || || |||||| |||||| || || || | || | || | || Sbjct 5391 GTCGCACACAAACTCCCTCTCTATATCCACCGCGTCGCGAACGATCCCCTTCACGCGCTC 5450 Query 4511 TTTAGATGGTTTATTTACTAAGTATCCAAACAATAAACACGCAAAATCACAATGCAAACC 4570 | | || || ||| | | | ||||| ||||| || || | || Sbjct 5451 CTCGCTCAGCTTCTTGCGCAAGAGAGTGTAGAGCAGGCACGCGAAATCGCAGTGGAGGCC 5510 Query 4571 TTCGTCTCTGCTA-ATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTTT 4629 |||||||| || | |||| ||||| || || ||||| ||||||||||| || | ||||| Sbjct 5511 TTCGTCTC-GCGAGATCAACTCGTTGGAGAAGGTTAACCCGGGCATTAACCCGCGCTTTT 5569 Query 4630 TAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAACG 4689 | ||||||||||| ||| || || || ||||| |||||||| ||| ||| || | Sbjct 5570 TTAGCCAAAATATCGCGCAGAAGCTACCGGAGAAGAAAATGCCTTCGACGCAGGCGAAAG 5629 Query 4690 CTA----CTAATCGGGACCCGAACGAGCTGGCTTTGTCTTTAATCCATTTTAATGCCCAG 4745 | | | |||| ||||||| || | | | ||||| | ||||| Sbjct 5630 CGATGAGCCTCTCGG----CGAACGA---TTCTCCGCCGTCGATCCACCGCAGGGCCCAC 5682 Query 4746 TTAGCTTTTTTCTTAACGCACGGAATTGTGTATATAGCGTTAAATAATTTACTTTTTTCA 4805 | || || ||| ||||| |||| || | || |||| || | | || || Sbjct 5683 TCGGCCTTCTTCGCCACGCAAGGAACGGTCTCCATCGCGTGGAACAGCCGGTTCTTCTCG 5742 Query 4806 AATGGGTCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATTTTCT 4865 | ||| | ||||| || || | | || || ||||||||||| || ||||| || Sbjct 5743 GCCGAGTCCTTGATATAGGTCTCGAGCAAGAGACTGTACATTTCAGAGTGGATATTCTCG 5802 Query 4866 ATAGCAATCTGAAATCCGTA-AAAGCATCTAGCTTCTGTTACTTGAACTTCGTTACAAAA 4924 || |||||||| || || || ||||| | ||| || | ||||| || || || || Sbjct 5803 ATCGCAATCTGGAAGCCATAGAAAGC-GCGAGCCTCCGAAACTTGGACCTCCTTCATGAA 5861 Query 4925 TCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAACATG 4984 ||| | | | || || || || ||||| ||| || || || || | || || Sbjct 5862 CCTTCCGGCCAGATTCTCCAAAACGATGCCGTCGGAGGCGGCGAAGAAGGCGAGCACGTG 5921 Query 4985 AGATATAAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCAAATCTTTAGTTAA 5044 || | |||| | ||| | | || |||| |||||| | || || | | Sbjct 5922 AGTGACGAAGTGCCTCTCGCCGTCGGTTAGGTTTTCCCAGTGACGTAAGTCGCCGGAGAG 5981 Query 5045 ATCAACTTCTTCAACAGTCCAAAACGACGCTTCCGCTTTTTTGTACATAGACCAAATATC 5104 ||| || || || | ||||| ||||| || || || || |||||||| ||| || || Sbjct 5982 ATCGACCTCCTCTGCGGTCCAGAACGAGGCCTCGGCCTTCTTGTACATCTCCCAGATCTC 6041 Query 5105 AGGATACTGAATCGG 5119 || ||||||||||| Sbjct 6042 CGGGTACTGAATCGG 6056 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 426354313740137