Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Castanea_20mollissima_20[genbank_20GCA_5F000763605.1_202014-10-06] 133,589 sequences; 833,240,550 total letters Query= NC_030696.1 Length=93139 Score E Sequences producing significant alignments: (Bits) Value seq59665 170 1e-37 seq115307 165 5e-36 seq78026 129 3e-25 seq117163 107 1e-18 seq37323 100 2e-16 seq82131 93.3 3e-14 seq109048 86.0 4e-12 >seq59665 Length=1686 Score = 170 bits (188), Expect = 1e-37 Identities = 302/434 (70%), Gaps = 10/434 (2%) Strand=Plus/Minus Query 57496 GCGACTGAGGGCTTCATCGACTTCCTTGACCGGAACCGACACGGATCGCCGTTCGAGCAC 57555 ||||| | |||| | ||| ||| ||| || |||| ||||| ||||||||||||||| Sbjct 1360 GCGACCGGGGGCCTGATCAACTACCTGATGCGCGACCGCCACGGGTCGCCGTTCGAGCAC 1301 Query 57556 TCCGTCTTCACCTTCCTGGTCGAGTGCCCCATATTCGTTTCGCGTGAGTTCATGCGCCAC 57615 | | |||||| || || || || ||||| | || ||||||||||| ||| Sbjct 1300 AACTCGATGACCTTCTACGTGCAGGCGCCGATCTTCGTGTTCCGCGAGTTCATGCGGCAC 1241 Query 57616 CGAATCGCCTCGTACAACGAGGAATCCGGTCGATACAAGGTCATGAAGGGCGTGTTCTAC 57675 || |||||||| ||||||||||| || || || ||| | || | |||||||||| Sbjct 1240 CGCATCGCCTCCTACAACGAGGAGTCGGGCCGCTACCGCGAGCTGCGGCCCGTGTTCTAC 1181 Query 57676 GTCCCGGCCGACGACCGGCCGCTGGTCCAGGTGGGCAAGCCGGGTGAGTATCGATTCGAG 57735 || ||| | |||||| ||||| ||||||||| || || | || ||| | Sbjct 1180 GTGCCGTCGCGGGACCGGAACCTGGTGCAGGTGGGCCGCCCCGGCGCCTA-CGAGTTCCT 1122 Query 57736 GCCGGGACGC-TCGAGCAGCACGAGCTGGT-GACAGACCTGTTC--CAGCTCGCCGCCGA 57791 |||||| || ||||||||||| |||||| ||| | | || | |||| ||| Sbjct 1121 GCCGGGCAGCGACGAGCAGCACGCGCTGGTCGACGGCGCCGTGCGGCAGCAGTCCG---- 1066 Query 57792 TACCGGC-TACAACCTCTACCAGACCATGCTCGACGCCGGCATTGCCCGGGAAGTTGCGC 57850 | |||| ||| | ||||| | | ||||||||||| ||| | || || || || |||| Sbjct 1065 TGGCGGCGTACGAGGCCTACCGGTCGATGCTCGACGCGGGCGTCGCTCGCGAGGTGGCGC 1006 Query 57851 GCGACGTCCTGCCGTTCCAGCTGTACACCTCGTTCTACGTCACCATGAACGCGCGCGGCC 57910 | ||| |||||| | | |||||| | || | ||||| || |||||||| || | | Sbjct 1005 GGATCGTGCTGCCGCTGAACCTGTACTCGTCCATGTACGTGACGATGAACGCCCGTGCGC 946 Query 57911 TGATGAACTTCCTC 57924 ||||||||||| || Sbjct 945 TGATGAACTTCGTC 932 >seq115307 Length=544 Score = 165 bits (182), Expect = 5e-36 Identities = 156/199 (78%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 71941 GACACCGTGATCACCGTGATCGGAAATCTGACCGCCGATCCCGAACTGCGCTTCACCCCC 72000 || ||||| ||||| ||||||| || || || ||| |||||||||||||||||||| Sbjct 199 GAAACCGTCATCACGCTGATCGGGAACCTCACGAACGACCCCGAACTGCGCTTCACCCCG 140 Query 72001 TCGGGCGCGCCGGTCGCCAACTTCACCGTCGCAAGCACCCCGCGGTACTTCGACAAGCAG 72060 ||||| || |||| ||||||||||| ||||| || || || |||||| ||| Sbjct 139 TCGGGTGCCGCGGTGGCCAACTTCACGGTCGCCTCGACTCCCCGCACGTTCGACCGTCAG 80 Query 72061 TCCAACGAGTGGAAGGACGCCGAGGCGCTCTTCCTGCGCTGCAACATCTGGCGCGAGCCG 72120 || |||||||||||||||| |||| |||| ||| |||| ||| ||||||||||| || Sbjct 79 TCGAACGAGTGGAAGGACGGCGAGACGCTGTTCATGCGTTGCGCGATCTGGCGCGAAGCG 20 Query 72121 GCCGAGAACGTCACCGAGT 72139 || ||||||||| |||||| Sbjct 19 GCGGAGAACGTCGCCGAGT 1 >seq78026 Length=538 Score = 129 bits (142), Expect = 3e-25 Identities = 251/365 (69%), Gaps = 7/365 (2%) Strand=Plus/Plus Query 48177 TCGGTCGCGACGTCGAACTC--CGGCGT-ATCAATTGTCACCACAACTACACCGAGCGGG 48233 |||| ||||| ||||| | | || | ||||| || |||||||||||||||| || || Sbjct 26 TCGGCCGCGAGGTCGATCGCATCGAGGAGATCAACTGCCACCACAACTACACCGCGCAGG 85 Query 48234 TCGAGATCGCCGGCAAGAAAGTGTGGCTCACGCGCAAGGGTGCAATCGACGCAAGCGAGG 48293 || | |||||||| || |||||| | |||||||| || |||||||| |||| | Sbjct 86 AGAAGCACTTCGGCAAGACCGTCTGGCTCTCCCGCAAGGGGGCGATCGACGCGAGCGCCG 145 Query 48294 GTCGATATGGACTGATCCCCGGATCCATGGGCACCAAGTCCTATGTCGTCCGCGGCAAAG 48353 | || || ||||||||||| || ||||| | ||| || |||||| |||| | Sbjct 146 GCCGGCCCGGGCTGATCCCCGGGTCGATGGGAGCGGCGTCGTACGTCGTCGAGGGCAGGG 205 Query 48354 GGAATGAGTCCGGCCTCTTCTCTGC-GCCC-CATGGTGCCGGCCGTCAGTATTCGCGCAC 48411 | || | || | || | | || |||| || || || || || |||| ||||| | Sbjct 206 GCAACCCGGTCG--CGCTGCACAGCAGCCCGCACGGGGCGGGGCGCGAGTACTCGCGGTC 263 Query 48412 CCAGGCCAAGAAGCTGTTCACCCTGGATGACCTCGCCGACCGAATGAAGGGCATCGAATA 48471 | ||| |||| ||||||| || || |||| || || |||| |||||||| | Sbjct 264 CGCGGCGCGCAAGCGCTTCACCCGTGACGATCTCGACGCGCGCATGACCGGCATCGAGTG 323 Query 48472 CCGCCACGGCGAAGAGTGGATCGACGAGATCCCGGACGCCTACAAGGACATCGACCAGGT 48531 ||| || | || ||||||| ||| ||||| ||||||||||||||| ||| Sbjct 324 GGGCCGGTCGGACGCGTTCCTCGACGAACACCCCGACGCGTACAAGGACATCGACGTGGT 383 Query 48532 GATGG 48536 |||| Sbjct 384 CATGG 388 >seq117163 Length=525 Score = 107 bits (118), Expect = 1e-18 Identities = 202/304 (66%), Gaps = 12/304 (4%) Strand=Plus/Plus Query 47822 CAGCTGGGTTCACTGGGTGGTGGCAACCACTTCATCGAGCTGTGCGAGTCCGTGTACAAC 47881 |||||||| | ||||| |||||||||||||||||| | | ||||| || | Sbjct 34 CAGCTGGGCACCCTGGGGTCGGGCAACCACTTCATCGAGGTCT------CCGTGGACGAG 87 Query 47882 CAGGGCCCGGGTGAGATCTGGCTGTTCCTCCACTCGGGGTCGCGCGGCGTCGGCAACAAG 47941 ||| || ||||| | ||| |||||||||||||||| ||||||||||||||| | Sbjct 88 GAGGACC-GGGTGTG----GGC-GTTCCTCCACTCGGGGAGCCGCGGCGTCGGCAACCGG 141 Query 47942 ATCGCGCAGAAGCANNNNNNNNNNNNNNNNNNNNNNNNNNNNAAGTGGCACATCCAGCTC 48001 ||||||||| ||| |||||| ||| | ||| Sbjct 142 ATCGCGCAGGCGCACATCGAGGTCGCGCAGGCCCTGATGACGAAGTGGTGGATCGATCTC 201 Query 48002 GCCAACCCCGACCTGGCCTACCTGCCGTCCGGGACCGACGAATTCGGCGACTACATTCGC 48061 | ||| |||||| ||||||||| | ||||| | || |||| | ||||| | Sbjct 202 CCGCACCGCGACCTCGCCTACCTGGTGGAGGGGACGGCGGAGTTCGACCGGTACATCGCC 261 Query 48062 GAGCTCCGGTGGGCACAGGCTTTCGCGCTCGAGAACCGGGCCGAAATGATGGACCGTTTC 48121 ||||| |||||||| ||| |||||||| | ||||| | || ||||||||||| || Sbjct 262 GAGCTGCGGTGGGCGCAGCGGTTCGCGCTGGTCAACCGCGAGGAGATGATGGACCGCGTC 321 Query 48122 GTCC 48125 |||| Sbjct 322 GTCC 325 >seq37323 Length=3330 Score = 100 bits (110), Expect = 2e-16 Identities = 105/138 (76%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 47475 TGCCGTTCATTCACCCTCACGTCGCCCTGATGCCGGATGCACACGGCGGCAAAGGATCTG 47534 |||| ||||| ||||| ||| | ||||||||||| || || ||| || || | Sbjct 2616 TGCCCTTCATCCACCCGCACCTGGCCCTGATGCCCGACGCGCACCTGGGGCTCGGCGCCA 2557 Query 47535 CCGTTGGCACGGTGATTCCCACCGTGGATGCCGTGATCCCGGCCGCGGTCGGCGTGGACA 47594 | || ||| ||||||| || || | | |||||||| ||||||||||| || ||||||| Sbjct 2556 CGGTCGGCTCGGTGATCCCGACGCTCGGCGCCGTGATGCCGGCCGCGGTGGGGGTGGACA 2497 Query 47595 TCGGCTGCGGCATGATCG 47612 |||||||||| ||||||| Sbjct 2496 TCGGCTGCGGGATGATCG 2479 >seq82131 Length=972 Score = 93.3 bits (102), Expect = 3e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 43075 GTGGACGTCATCATCCTGGCCCGCGGCGGCGGCTCGAAGGAAGACCTCCTCCCGTGGTCC 43134 || || || ||| || | || ||||||||||| ||| ||| ||||| || || | ||| Sbjct 156 GTCGAGGTGATCGTCATCGCGCGCGGCGGCGGTTCGCTGGAGGACCTGCTGCCCTTCTCC 215 Query 43135 GACGAGGCTCTGGTTCGCGCCGCGTTCGCGTCTGCAACCCCGGTTGTGTCTGCGATTGGC 43194 ||||||| || || ||||| | |||| | || ||||| || || || ||| Sbjct 216 GACGAGGGGCTCGTCCGCGCGGTCGCCGCGGCGCGCACGCCGGTGGTCAGCGCCATCGGC 275 Query 43195 CACGAGAATGATCGGCCGCTCCTCGACCGCGTTGTGGACCTTCGAGCGGCAACTCCGACG 43254 ||||||| || ||| ||||||||| ||| | ||| | || || | || ||||| Sbjct 276 CACGAGAGCGACAACCCGATCCTCGACCTCGTCGCCGACGTGCGCGCCTCGACGCCGACC 335 Query 43255 GATGCAGCGAAACGTGTCGTACCCGACGT 43283 || || || || || ||||| |||||||| Sbjct 336 GACGCGGCCAAGCGGGTCGTGCCCGACGT 364 >seq109048 Length=609 Score = 86.0 bits (94), Expect = 4e-12 Identities = 82/105 (78%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 72171 GGGTCGCCTCAAGCAGCGCAGCTACGAGACGAAGGAAGGCGAGAACCGGACGGTCATCGA 72230 ||| || |||||||||||| | |||||| || |||||||| || || |||||||| Sbjct 609 GGGGCGGCTCAAGCAGCGCTCGTTCGAGACCCGTGAGGGCGAGAAGCGCACCGTCATCGA 550 Query 72231 GCTCGAGGTCGAGGAGATCGGCCCCGCACTGCGGTACGCCACCGC 72275 |||||| ||||||||| ||||||| | ||| |||||| || || Sbjct 549 GCTCGACGTCGAGGAGGTCGGCCCGTCGCTGAAGTACGCGACGGC 505 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 297434951699900