Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Castanea_20mollissima_20[genbank_20GCA_5F000763605.1_202014-10-06] 133,589 sequences; 833,240,550 total letters Query= NC_030901.1 Length=92618 Score E Sequences producing significant alignments: (Bits) Value seq37323 172 3e-38 seq115307 165 5e-36 seq78026 136 2e-27 seq117163 116 2e-21 seq78025 111 9e-20 seq59665 109 3e-19 seq82131 93.3 2e-14 seq109048 91.5 9e-14 >seq37323 Length=3330 Score = 172 bits (190), Expect = 3e-38 Identities = 523/807 (65%), Gaps = 61/807 (8%) Strand=Plus/Minus Query 47092 GCTCGAGGCCATGGCCGAAGAGAAGGGCGTCGACCTCAAG-CATTCGCCGAAG--TGGCG 47148 ||| ||||| ||||||| ||| ||| |||||| | | | |||| | | ||||| Sbjct 1955 GCTGGAGGCGCTGGCCGACGAGGCCGGCTTCGACCCGGCGTCCTACGCCAAGGCGTGGCG 1896 Query 47149 GGAACAGCTGGGTTCGCTCGGCGGCGGCAACCACTTCATCGAGCTGTGCGAGTCCGTGCA 47208 | | |||||||| ||||||||| |||||||||||||||||||| | ||||| | Sbjct 1895 GCAGCAGCTGGGCTCGCTCGGCAGCGGCAACCACTTCATCGAG------GTCTCCGTCGA 1842 Query 47209 CGAGCGTGGACCGGGCGCGATCTGGCTCTTCCTGCATTCCGGCAGCCGCGGTGTGGGAAA 47268 ||| |||| | ||| | ||||| |||||||| || |||||||| || ||||| || Sbjct 1841 CGA-----GACC-GATGCGGTGTGGCTGTTCCTGCACTCGGGCAGCCGGGGCGTGGGCAA 1788 Query 47269 CAAGATCGCGCAGAAGCACANNNNNNNNNNNNNNNNNNNNNNNNNNAAGTGGCACATCCA 47328 | |||||| ||| |||||| | | ||||| Sbjct 1787 CCGGATCGCCCAGCAGCACATCAAGGTCGCGCAGGCCGAGATGACGCGGCTGTGGATCCA 1728 Query 47329 GCTCGCCAACCCCGACCTGGCCTACCTGCCGTCCGGGACTGACG-AGTTCGGCGACTACA 47387 ||| || ||| |||||||||||||||| | || || | || |||||| | ||||| Sbjct 1727 GCTGCCCGACCGCGACCTGGCCTACCTGGTGGAGGGCAC-GCCGCAGTTCGACCGCTACA 1669 Query 47388 TCCGCGAGCTCCGGTGGGCACAGGCTTTCGCGCTCGAGAACCGCGCCGAGATGATGGACC 47447 || ||| || || ||||| ||| ||||| || |||||||| ||||||||||||| Sbjct 1668 TCGCCGAACTGCGATGGGCGCAGCGCTTCGCCCTGCTGAACCGCGAGGAGATGATGGACC 1609 Query 47448 GTTTCGTCCATGTGTTCACCCGGTGGCTCGAGTACTCCGATGCTGTCGAATTCGGCGAGC 47507 | |||| || | || ||| | |||| || || ||| | || | || Sbjct 1608 G---CGTC-----GTGCGCCAGGTCTC-CGAGCACCTCGGTGC-GGCG--------GTGC 1567 Query 47508 TCGGGCGCGACGTCGAAGTCCGGCGAATCAATTGCCACCACAACTACACCGAGCGGGTCG 47567 | |||||| ||| ||||| ||||||||||||| ||| ||| || Sbjct 1566 AGGAGCGCGA------------GCGGATCAACTGCCACCACAACTTCACGCAGCAGGAGC 1519 Query 47568 AGATCGCCGGCAAGAAAGTGTGGCTCACACGCAAGGGTGCAATCGACGCAAGCGAGGGTC 47627 | | |||| | || ||||| | |||||||| || ||| | || | |||| | Sbjct 1518 GGCACTTCGGCCGTGACGTCTGGCTGTCCCGCAAGGGCGCCATCCAGGCGCGTCAGGG-C 1460 Query 47628 GATAT-GGACTGATCCCCGGATCCATGGGCACCAAGTCCTATGTCGT------CCGCGGC 47680 || | || ||||||||||| || ||||| ||| ||||| || || |||||| Sbjct 1459 GACCTCGGCCTGATCCCCGGGTCGATGGGGACCGCCTCCTACGTGGTGGAGGGGCGCGGC 1400 Query 47681 AAAGGGAATGAGTCCGGCCTCTTCTCTGCGCCCCATGGTGCCGGCCGTCAGTATTCGCGC 47740 | || ||| | ||| ||| |||| || || ||||| || | ||||| Sbjct 1399 GACCGG-ATG-----GCGCTCGACTCGTCGCCGCACGGCGCCGGGCGCGTGCTGTCGCGG 1346 Query 47741 ACCCAGGCCAGGAAGTTGTTCACCCTGGATGACCTCGCCGACCGAATGAAGGGCATCGAA 47800 | |||| ||||| |||||| | || | || ||| |||| ||||||||| Sbjct 1345 TCGAAGGCGCGGAAGGCGTTCACGATCGAGCAGCTGCGCGAGGCGATGACGGGCATCGAG 1286 Query 47801 TACCGCCACGGTGAGGAGTGGATTGACGAGATCCCCGACGCCTACAAGGATATCGACCAG 47860 | ||| || |||| | | ||||||||||| | ||||||||| ||||||||| Sbjct 1285 TTCCGGGACACCGAGGCCTTCCTGGACGAGATCCCGCAGGCCTACAAGCCGATCGACCAG 1226 Query 47861 GTGATGGAAGACGCCAAGGACCTGGTC 47887 ||||||| ||||| ||||||||| Sbjct 1225 GTGATGGCCGACGCGGCCGACCTGGTC 1199 Score = 105 bits (116), Expect = 4e-18 Identities = 106/138 (77%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 46806 TGCCGTTCATCCACCCTCACGTCGCTCTGATGCCGGATGCACACGGCGGCAAAGGATCTG 46865 |||| ||||||||||| ||| | || |||||||| || || ||| || || | Sbjct 2616 TGCCCTTCATCCACCCGCACCTGGCCCTGATGCCCGACGCGCACCTGGGGCTCGGCGCCA 2557 Query 46866 CCGTTGGCACGGTGATACCCACGGTGGACGCCGTGATCCCGGCCGCGGTCGGCGTGGACA 46925 | || ||| ||||||| || ||| | | ||||||||| ||||||||||| || ||||||| Sbjct 2556 CGGTCGGCTCGGTGATCCCGACGCTCGGCGCCGTGATGCCGGCCGCGGTGGGGGTGGACA 2497 Query 46926 TCGGGTGCGGCATGATCG 46943 |||| ||||| ||||||| Sbjct 2496 TCGGCTGCGGGATGATCG 2479 >seq115307 Length=544 Score = 165 bits (182), Expect = 5e-36 Identities = 156/199 (78%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 70878 GACACCGTGATCACCGTGATCGGAAATCTGACCGCCGATCCCGAACTGCGCTTCACCCCC 70937 || ||||| ||||| ||||||| || || || ||| |||||||||||||||||||| Sbjct 199 GAAACCGTCATCACGCTGATCGGGAACCTCACGAACGACCCCGAACTGCGCTTCACCCCG 140 Query 70938 TCGGGCGCGCCGGTCGCCAACTTCACCGTCGCAAGCACCCCGCGGTACTTCGACAAGCAG 70997 ||||| || |||| ||||||||||| ||||| || || || |||||| ||| Sbjct 139 TCGGGTGCCGCGGTGGCCAACTTCACGGTCGCCTCGACTCCCCGCACGTTCGACCGTCAG 80 Query 70998 TCCAACGAGTGGAAGGACGCCGAGGCGCTCTTCCTGCGCTGCAACATCTGGCGCGAGCCG 71057 || |||||||||||||||| |||| |||| ||| |||| ||| ||||||||||| || Sbjct 79 TCGAACGAGTGGAAGGACGGCGAGACGCTGTTCATGCGTTGCGCGATCTGGCGCGAAGCG 20 Query 71058 GCCGAGAACGTCACCGAGT 71076 || ||||||||| |||||| Sbjct 19 GCGGAGAACGTCGCCGAGT 1 >seq78026 Length=538 Score = 136 bits (150), Expect = 2e-27 Identities = 267/387 (69%), Gaps = 11/387 (3%) Strand=Plus/Plus Query 47508 TCGGGCGCGACGTCGAAGTC--CGGCGA-ATCAATTGCCACCACAACTACACCGAGCGGG 47564 |||| ||||| ||||| | || || ||||| ||||||||||||||||||| || || Sbjct 26 TCGGCCGCGAGGTCGATCGCATCGAGGAGATCAACTGCCACCACAACTACACCGCGCAGG 85 Query 47565 TCGAGATCGCCGGCAAGAAAGTGTGGCTCACACGCAAGGGTGCAATCGACGCAAGCGAGG 47624 || | |||||||| || |||||| | |||||||| || |||||||| |||| | Sbjct 86 AGAAGCACTTCGGCAAGACCGTCTGGCTCTCCCGCAAGGGGGCGATCGACGCGAGCGCCG 145 Query 47625 GTCGATATGGACTGATCCCCGGATCCATGGGCACCAAGTCCTATGTCGTCCGCGGCAAAG 47684 | || || ||||||||||| || ||||| | ||| || |||||| |||| | Sbjct 146 GCCGGCCCGGGCTGATCCCCGGGTCGATGGGAGCGGCGTCGTACGTCGTCGAGGGCAGGG 205 Query 47685 GGAATGAGTCCGGCCTCTTCTCTGC-GCCC-CATGGTGCCGGCCGTCAGTATTCGCGCAC 47742 | || | || | || | | || |||| || || || || || |||| ||||| | Sbjct 206 GCAACCCGGTCG--CGCTGCACAGCAGCCCGCACGGGGCGGGGCGCGAGTACTCGCGGTC 263 Query 47743 CCAGGCCAGGAAGTTGTTCACCCTGGATGACCTCGCCGACCGAATGAAGGGCATCGAATA 47802 | ||| | ||| ||||||| || || |||| || || |||| |||||||| | Sbjct 264 CGCGGCGCGCAAGCGCTTCACCCGTGACGATCTCGACGCGCGCATGACCGGCATCGAGTG 323 Query 47803 CCGCCACGGT--GAGGAGTGGATTGACGAGATCCCCGACGCCTACAAGGATATCGACCAG 47860 || |||| || | || | ||||| ||||||||| |||||||| |||||| | Sbjct 324 GGGC--CGGTCGGACGCGTTCCTCGACGAACACCCCGACGCGTACAAGGACATCGACGTG 381 Query 47861 GTGATGGAAGACGCCAAGGACCTGGTC 47887 || |||| ||||| ||||| ||| Sbjct 382 GTCATGGCCGACGCGGCCGACCTCGTC 408 >seq117163 Length=525 Score = 116 bits (128), Expect = 2e-21 Identities = 210/313 (67%), Gaps = 12/313 (4%) Strand=Plus/Plus Query 47144 TGGCGGGAACAGCTGGGTTCGCTCGGCGGCGGCAACCACTTCATCGAGCTGTGCGAGTCC 47203 |||| | ||||||||| | || || |||||||||||||||||| | | || Sbjct 25 TGGCCGCTACAGCTGGGCACCCTGGGGTCGGGCAACCACTTCATCGAGGTCT------CC 78 Query 47204 GTGCACGAGCGTGGACCGGGCGCGATCTGGCTCTTCCTGCATTCCGGCAGCCGCGGTGTG 47263 ||| ||||| | |||||||| | | ||| ||||| || || || |||||||| || Sbjct 79 GTGGACGAG-GAGGACCGGGTGTG----GGCG-TTCCTCCACTCGGGGAGCCGCGGCGTC 132 Query 47264 GGAAACAAGATCGCGCAGAAGCACANNNNNNNNNNNNNNNNNNNNNNNNNNAAGTGGCAC 47323 || ||| |||||||||| ||||| |||||| Sbjct 133 GGCAACCGGATCGCGCAGGCGCACATCGAGGTCGCGCAGGCCCTGATGACGAAGTGGTGG 192 Query 47324 ATCCAGCTCGCCAACCCCGACCTGGCCTACCTGCCGTCCGGGACTGACGAGTTCGGCGAC 47383 ||| | ||| | ||| |||||| ||||||||| | ||||| | ||||||| | Sbjct 193 ATCGATCTCCCGCACCGCGACCTCGCCTACCTGGTGGAGGGGACGGCGGAGTTCGACCGG 252 Query 47384 TACATCCGCGAGCTCCGGTGGGCACAGGCTTTCGCGCTCGAGAACCGCGCCGAGATGATG 47443 |||||| |||||| |||||||| ||| |||||||| | ||||||| ||||||||| Sbjct 253 TACATCGCCGAGCTGCGGTGGGCGCAGCGGTTCGCGCTGGTCAACCGCGAGGAGATGATG 312 Query 47444 GACCGTTTCGTCC 47456 ||||| |||||| Sbjct 313 GACCGCGTCGTCC 325 >seq78025 Length=530 Score = 111 bits (122), Expect = 9e-20 Identities = 273/406 (67%), Gaps = 36/406 (9%) Strand=Plus/Plus Query 46880 ATACCCACGGTGGACGCCGTGATCCCGGCCGCGGTCGGCGTGGACATCGGGTGCGGCATG 46939 || |||||| ||| ||| | |||||||| ||||||||||| |||||||||||||| ||| Sbjct 3 ATCCCCACGCTGGGCGCGATCATCCCGGCGGCGGTCGGCGTCGACATCGGGTGCGGGATG 62 Query 46940 ATCGGCGTCGAAACCTGGGTG-CAGAAGAGCGACATCGCAGACCTCAGCCTCGCGGACCT 46998 || | |||| ||| | | | | ||| || |||||| || || |||||| || Sbjct 63 ATGGCCGTCCGCACCCCGTTCACCGCCGAG-GAGTTCGCAGCGGTCGACCGCGCGGAACT 121 Query 46999 GCGTGAGCGCGTCGAGATCGCCATCCCGCTCTCGCCGGGGAACTACAACGTCGATGGGCG 47058 || | | || | || | ||||| ||| |||| ||||||| || | | || Sbjct 122 GCACGCCGCCATCAGCCGCACCGTGCCGCTGTCGGCGGGTCGCTACAACACCG-TCGTCG 180 Query 47059 TTGGGCCGCGCACACCGAGGA-GCGCATTGCGCGGCTC--GAGGCCATGGC---CGAAGA 47112 || ||||| || ||||| || ||| | ||||||| ||| || || Sbjct 181 ACGG--------CACCGCGGTCGCGCACATCGAGGCCCTGGAGGCCAAGGCGGGCGTGGA 232 Query 47113 GAAGGGCGTCGACCTCAAGCATTCGCCGAAGTGGCGGGAACAGCTGGGTTCGCTCGGCGG 47172 | ||| || || || ||||| ||||||| ||||||||||||||||| Sbjct 233 GCAGGCCGACGCGATCG------CGCCGG-GTGGCGGCTGCAGCTGGGTTCGCTCGGTTC 285 Query 47173 CGGCAACCACTTCATCGAGCTGTGCGAGTCCGTGCACGAGCGTGGACCGGGCGCGATCTG 47232 ||||||||||||||||||| | | | | |||||| | ||||||| | || Sbjct 286 CGGCAACCACTTCATCGAGGTCAG------CCTCGACGAGC-TCGACCGGG-----TGTG 333 Query 47233 GCTCTTCCTGCATTCCGGCAGCCGCGGTGTGGGAAACAAGATCGCG 47278 ||| |||||||| || ||| ||||| ||||| |||||| ||||| Sbjct 334 GCTGTTCCTGCACTCGGGCTCGCGCGGGGTGGGCAACAAGCTCGCG 379 >seq59665 Length=1686 Score = 109 bits (120), Expect = 3e-19 Identities = 288/432 (67%), Gaps = 6/432 (1%) Strand=Plus/Minus Query 56740 GCGACCGAAGGATTCATCGACTTCCTTGACCGGAACCGGCACGGATCGCCGTTCGAGCAC 56799 ||||||| || | ||| ||| ||| || |||| ||||| ||||||||||||||| Sbjct 1360 GCGACCGGGGGCCTGATCAACTACCTGATGCGCGACCGCCACGGGTCGCCGTTCGAGCAC 1301 Query 56800 TCCGTCTTCACCTTCCTGATCGAGTGCCCCATCTTCGTTGCGCGTGAGTTCATGCGCCAC 56859 | | |||||| | || || |||||||| || ||||||||||| ||| Sbjct 1300 AACTCGATGACCTTCTACGTGCAGGCGCCGATCTTCGTGTTCCGCGAGTTCATGCGGCAC 1241 Query 56860 CGAATCGCCTCGTACAACGAGGAATCCGGTCGATACAAGGTCATGAAGGGCGTGTTCTAC 56919 || |||||||| ||||||||||| || || || ||| | || | |||||||||| Sbjct 1240 CGCATCGCCTCCTACAACGAGGAGTCGGGCCGCTACCGCGAGCTGCGGCCCGTGTTCTAC 1181 Query 56920 GTCCCGGCCGACGACCGGCCGCTGGTCCAGGTAGGCAAGCCGGGTGAGTATCGA-TTCGA 56978 || ||| | |||||| ||||| ||||| ||| || || | || ||| ||| Sbjct 1180 GTGCCGTCGCGGGACCGGAACCTGGTGCAGGTGGGCCGCCCCGGCGCCTA-CGAGTTCCT 1122 Query 56979 GGCCGGGACGGTCGAGCAGCATGCCGTTGTC-ACGAGAGCCTTTGAGCTTGCCG-CCGCC 57036 | | || | | ||||||||| || | ||| ||| | ||| || | || | ||| Sbjct 1121 GCCGGGCAGCGACGAGCAGCACGCGCTGGTCGACG-GCGCC-GTGCGGCAGCAGTCCGTG 1064 Query 57037 TTCACCTACGGCCTCTACGAGCAGATGTTGGCCATGGGGATCGCCCGCGAAGTCGCTCGC 57096 | |||| |||| | |||| | | | ||| |||| ||||| || || || Sbjct 1063 GCGGCGTACGAGGCCTACCGGTCGATGCTCGACGCGGGCGTCGCTCGCGAGGTGGCGCGG 1004 Query 57097 GACGTCCTGCCGTTCCAGCTATACACCTCGTTCTACGTCACCATGAACGCGCGCGGCCTG 57156 ||| |||||| | | || ||| | || | ||||| || |||||||| || | ||| Sbjct 1003 ATCGTGCTGCCGCTGAACCTGTACTCGTCCATGTACGTGACGATGAACGCCCGTGCGCTG 944 Query 57157 ATGAACTTCCTC 57168 ||||||||| || Sbjct 943 ATGAACTTCGTC 932 >seq82131 Length=972 Score = 93.3 bits (102), Expect = 2e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 42766 GTGGACGTCATCATCCTGGCCCGCGGCGGCGGCTCGAAGGAAGACCTCCTCCCGTGGTCC 42825 || || || ||| || | || ||||||||||| ||| ||| ||||| || || | ||| Sbjct 156 GTCGAGGTGATCGTCATCGCGCGCGGCGGCGGTTCGCTGGAGGACCTGCTGCCCTTCTCC 215 Query 42826 GACGAGGCTCTGGTTCGCGCCGCGTTCGCGTCTGCAACCCCGGTTGTGTCTGCGATTGGC 42885 ||||||| || || ||||| | |||| | || ||||| || || || ||| Sbjct 216 GACGAGGGGCTCGTCCGCGCGGTCGCCGCGGCGCGCACGCCGGTGGTCAGCGCCATCGGC 275 Query 42886 CACGAGAATGATCGGCCGCTCCTCGACCGCGTTGTGGACCTTCGAGCGGCAACTCCGACG 42945 ||||||| || ||| ||||||||| ||| | ||| | || || | || ||||| Sbjct 276 CACGAGAGCGACAACCCGATCCTCGACCTCGTCGCCGACGTGCGCGCCTCGACGCCGACC 335 Query 42946 GATGCAGCGAAACGTGTCGTACCCGACGT 42974 || || || || || ||||| |||||||| Sbjct 336 GACGCGGCCAAGCGGGTCGTGCCCGACGT 364 >seq109048 Length=609 Score = 91.5 bits (100), Expect = 9e-14 Identities = 83/105 (79%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 71108 GGGTCGCCTCAAGCAGCGCAGCTACGAGACGAAGGAAGGCGAGAACCGGACGGTCATCGA 71167 ||| || |||||||||||| | |||||| || |||||||| || || |||||||| Sbjct 609 GGGGCGGCTCAAGCAGCGCTCGTTCGAGACCCGTGAGGGCGAGAAGCGCACCGTCATCGA 550 Query 71168 GCTCGAGGTCGAGGAGATCGGCCCCGCGCTGCGGTACGCCACCGC 71212 |||||| ||||||||| ||||||| ||||| |||||| || || Sbjct 549 GCTCGACGTCGAGGAGGTCGGCCCGTCGCTGAAGTACGCGACGGC 505 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 295770466094791