Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Castanea_20mollissima_20[genbank_20GCA_5F000763605.1_202014-10-06]
133,589 sequences; 833,240,550 total letters
Query= NC_030909.1
Length=50183
Score E
Sequences producing significant alignments: (Bits) Value
seq112858 114 4e-21
seq99257 95.1 4e-15
>seq112858
Length=569
Score = 114 bits (126), Expect = 4e-21
Identities = 201/283 (71%), Gaps = 15/283 (5%)
Strand=Plus/Plus
Query 33938 CGAATCGCGAGTACTTACCCAGGAACGCGCACCG-GACAGTGCTTGGCTCGCCGTTGCGG 33996
|||| || |||||| || |||| ||| |||| || ||| | | |||| ||||
Sbjct 208 CGAAGCGGGAGTACCGGCCGTGGAAGGCG-ACCGTGATGGTGTCCGTCGGGCCGGCGCGG 266
Query 33997 TGCTTCGCGATGATCAACTCAGCCACGCCGCGGTACTGGGTGTCCG-GGT-GATAGACCT 34054
|||||||||| ||| | || || | || ||| | || || || ||| || | ||
Sbjct 267 TGCTTCGCGACGATGAGGTCGGC---GTCGGGGTTC-GGCTGATCGCGGTCGAACGCGCT 322
Query 34055 CGTCTCGGTACACGAACATGATCACG---TCGGCGTCCTGCTCGATCGCCCCGGACTCGC 34111
| || |||| || || ||||||| ||||||||||||||||||| ||| |||||||
Sbjct 323 C-TCCCGGTGCAG---CAGGATCACGATGTCGGCGTCCTGCTCGATCGACCCCGACTCGC 378
Query 34112 GCAGGTCCGACATCATCGGTCGCTTGTTCGGCCGCTGCTCCAGGGAGCGGTTGAGCTGCG 34171
| ||||| || ||| || ||||||| || ||||||||| ||||| |||||||
Sbjct 379 GGAGGTCGGAGATCGCGGGCCGCTTGTCCGCGCGCTGCTCCGACCCTCGGTTCAGCTGCG 438
Query 34172 ACAGCACGATCACGGGGATACCAAGCTCCATGGCCAGTAGCTT 34214
||||| |||| || || | || |||||| | || || |||||
Sbjct 439 ACAGCGCGATGACCGGCACGCCGAGCTCCTTCGCGAGCAGCTT 481
>seq99257
Length=723
Score = 95.1 bits (104), Expect = 4e-15
Identities = 116/156 (74%), Gaps = 2/156 (1%)
Strand=Plus/Plus
Query 34054 TCGTCTCGGTACACGAACATGATCACGTCGGCGTCCTGCTCGATCGCCCCGGACTCGCGC 34113
|| || ||| |||||||||| | ||||||||||||||||||||||| || || ||||||
Sbjct 522 TCCTCGCGGAACACGAACATCACCACGTCGGCGTCCTGCTCGATCGAGCCCGATTCGCGC 581
Query 34114 AGGTCCGACATCATCGGTCGCTTGTTCGGC-CGCTGCTCCAGGGAGCGGTTGAGCTGCGA 34172
|||||||| | | ||| |||||| ||| | || | ||| | || ||||||||
Sbjct 582 AGGTCCGAGAGCTGCGGGCGCTTG-TCGTCGCGGTTCTCGACCTGACGCGACAGCTGCGA 640
Query 34173 CAGCACGATCACGGGGATACCAAGCTCCATGGCCAG 34208
||| |||| | || | | |||||| |||||||
Sbjct 641 CAGGGCGATGATCGGCACCGCCAGCTCCTTGGCCAG 676
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 160209444824610
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |