Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Castanea_20mollissima_20[genbank_20GCA_5F000763605.1_202014-10-06] 133,589 sequences; 833,240,550 total letters Query= NC_030909.1 Length=50183 Score E Sequences producing significant alignments: (Bits) Value seq112858 114 4e-21 seq99257 95.1 4e-15 >seq112858 Length=569 Score = 114 bits (126), Expect = 4e-21 Identities = 201/283 (71%), Gaps = 15/283 (5%) Strand=Plus/Plus Query 33938 CGAATCGCGAGTACTTACCCAGGAACGCGCACCG-GACAGTGCTTGGCTCGCCGTTGCGG 33996 |||| || |||||| || |||| ||| |||| || ||| | | |||| |||| Sbjct 208 CGAAGCGGGAGTACCGGCCGTGGAAGGCG-ACCGTGATGGTGTCCGTCGGGCCGGCGCGG 266 Query 33997 TGCTTCGCGATGATCAACTCAGCCACGCCGCGGTACTGGGTGTCCG-GGT-GATAGACCT 34054 |||||||||| ||| | || || | || ||| | || || || ||| || | || Sbjct 267 TGCTTCGCGACGATGAGGTCGGC---GTCGGGGTTC-GGCTGATCGCGGTCGAACGCGCT 322 Query 34055 CGTCTCGGTACACGAACATGATCACG---TCGGCGTCCTGCTCGATCGCCCCGGACTCGC 34111 | || |||| || || ||||||| ||||||||||||||||||| ||| ||||||| Sbjct 323 C-TCCCGGTGCAG---CAGGATCACGATGTCGGCGTCCTGCTCGATCGACCCCGACTCGC 378 Query 34112 GCAGGTCCGACATCATCGGTCGCTTGTTCGGCCGCTGCTCCAGGGAGCGGTTGAGCTGCG 34171 | ||||| || ||| || ||||||| || ||||||||| ||||| ||||||| Sbjct 379 GGAGGTCGGAGATCGCGGGCCGCTTGTCCGCGCGCTGCTCCGACCCTCGGTTCAGCTGCG 438 Query 34172 ACAGCACGATCACGGGGATACCAAGCTCCATGGCCAGTAGCTT 34214 ||||| |||| || || | || |||||| | || || ||||| Sbjct 439 ACAGCGCGATGACCGGCACGCCGAGCTCCTTCGCGAGCAGCTT 481 >seq99257 Length=723 Score = 95.1 bits (104), Expect = 4e-15 Identities = 116/156 (74%), Gaps = 2/156 (1%) Strand=Plus/Plus Query 34054 TCGTCTCGGTACACGAACATGATCACGTCGGCGTCCTGCTCGATCGCCCCGGACTCGCGC 34113 || || ||| |||||||||| | ||||||||||||||||||||||| || || |||||| Sbjct 522 TCCTCGCGGAACACGAACATCACCACGTCGGCGTCCTGCTCGATCGAGCCCGATTCGCGC 581 Query 34114 AGGTCCGACATCATCGGTCGCTTGTTCGGC-CGCTGCTCCAGGGAGCGGTTGAGCTGCGA 34172 |||||||| | | ||| |||||| ||| | || | ||| | || |||||||| Sbjct 582 AGGTCCGAGAGCTGCGGGCGCTTG-TCGTCGCGGTTCTCGACCTGACGCGACAGCTGCGA 640 Query 34173 CAGCACGATCACGGGGATACCAAGCTCCATGGCCAG 34208 ||| |||| | || | | |||||| ||||||| Sbjct 641 CAGGGCGATGATCGGCACCGCCAGCTCCTTGGCCAG 676 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 160209444824610