Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Castanea_20mollissima_20[genbank_20GCA_5F000763605.1_202014-10-06]
133,589 sequences; 833,240,550 total letters
Query= NC_030917.1
Length=93577
Score E
Sequences producing significant alignments: (Bits) Value
seq119262 414 6e-111
seq115307 154 9e-33
seq95548 145 5e-30
seq82131 145 5e-30
seq37323 140 2e-28
seq78026 136 2e-27
seq117163 113 3e-20
seq103996 82.4 5e-11
seq37623 82.4 5e-11
>seq119262
Length=507
Score = 414 bits (458), Expect = 6e-111
Identities = 392/499 (79%), Gaps = 6/499 (1%)
Strand=Plus/Plus
Query 78662 ACGCTCCTGGAGGGCTTCCTCTTCTACTCGGGCTTCTACCTGCCGATGTACTGGTCGAGC 78721
||||| || ||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 10 ACGCTGCTCGAGTCGTTCCTGTTCTACTCGGGCTTCTACCTGCCGATGTACTGGTCCTCG 69
Query 78722 CGCGCCAAGCTGACGAACACCGCGGACGTGATCCGGTTGATTATCCGAGACGAAGCAGTT 78781
||||||||||| |||||||| || ||| | ||||| | || ||||| ||||| || ||
Sbjct 70 CGCGCCAAGCTCACGAACACGGCCGACCTCATCCGCCTCATCATCCGCGACGAGGCCGTG 129
Query 78782 CATGGGTACTACATCGGATACAAGTACCAGCGAGGCCTCGAGACCCAGGGGCCGGCGCGG 78841
|| |||||||||||||| ||||||| |||| || |||||| || | | || |||
Sbjct 130 CACGGGTACTACATCGGCTACAAGTTCCAGAAGGGGCTCGAGGGCCTGTCGGAGGAGCGC 189
Query 78842 CAGGCTGAGCTCAAGGAGTACACGTTCGATCTGCTCTCGGAGCTCTACGACAACGAGTGT 78901
|| ||| ||||||| ||||||||| ||||| | ||||||||||||||||||
Sbjct 190 AAGCAGGAGATCAAGGACTACACGTTCTCGCTGCTGTACGAGCTCTACGACAACGAGATC 249
Query 78902 GACTACACCGAGCAGCTCTATGACGACGTCGGACTCACCGAGGATGTCAAGAAGTTCCTG 78961
| |||||| || | ||||| |||| |||||| || |||||||| |||||||||||||||
Sbjct 250 CAGTACACCCAGGACCTCTACGACGGCGTCGGTCTGACCGAGGACGTCAAGAAGTTCCTG 309
Query 78962 CGCTACAACGGCAACAAGGCGCTGATGAACCTCGGCTACGAAGCACTGTTCCCCAAGGAA 79021
| |||||||| |||||||||||| |||||||| |||||||| | ||||||| |||
Sbjct 310 CACTACAACGCCAACAAGGCGCTCATGAACCTGGGCTACGAGCCGATGTTCCCGAAG--- 366
Query 79022 GAGACCATGGCAG---ACCCGGCCATCATGTCCGCGCTCTCACCAGGCGGCGACGAGAAC 79078
||||| | || | ||||||| ||| |||| || || || || || ||||||||||
Sbjct 367 GAGACGACGGACGTGAACCCGGCGATCCTGTCGGCACTGTCCCCGAACGCCGACGAGAAC 426
Query 79079 CACGACTTCTTCTCCGGGTCGGGCTCGAGCTACGTCATCGGCAAAGCTGAAGCCACGGCA 79138
|||||||||||||||||| |||||| |||||||||||||| || || |||| |
Sbjct 427 CACGACTTCTTCTCCGGGAGCGGCTCGTCGTACGTCATCGGCAAGGCGGAGACCACCGAG 486
Query 79139 GATGAGGACTGGGACTTCT 79157
|| ||||||||||||||||
Sbjct 487 GACGAGGACTGGGACTTCT 505
>seq115307
Length=544
Score = 154 bits (170), Expect = 9e-33
Identities = 159/208 (76%), Gaps = 0/208 (0%)
Strand=Plus/Minus
Query 69624 ATGGCAAATGACACCGTCATCACCGTCATCGGTAACCTGACCGCCGACCCCGAACTCCGG 69683
||||| ||| ||||||||||| | ||||| ||||| || |||||||||||| ||
Sbjct 208 ATGGCGGGTGAAACCGTCATCACGCTGATCGGGAACCTCACGAACGACCCCGAACTGCGC 149
Query 69684 TTCACGCCCTCCGGTGCCGCGGTCGCGAACTTCACCGTCGCGTCGACCCCGCGGTACTTC 69743
||||| || || ||||||||||| || |||||||| ||||| ||||| || || |||
Sbjct 148 TTCACCCCGTCGGGTGCCGCGGTGGCCAACTTCACGGTCGCCTCGACTCCCCGCACGTTC 89
Query 69744 GACAAGCAGTCGAACGAGTGGAAGGATGCCGAGGCACTCTTCCTGCGCTGCAACGTCTGG 69803
||| |||||||||||||||||||| | |||| | || ||| |||| ||| |||||
Sbjct 88 GACCGTCAGTCGAACGAGTGGAAGGACGGCGAGACGCTGTTCATGCGTTGCGCGATCTGG 29
Query 69804 CGCGAGTACGCCGAGAACGTGACTGAGT 69831
||||| || |||||||| | ||||
Sbjct 28 CGCGAAGCGGCGGAGAACGTCGCCGAGT 1
>seq95548
Length=770
Score = 145 bits (160), Expect = 5e-30
Identities = 154/202 (76%), Gaps = 6/202 (3%)
Strand=Plus/Minus
Query 55100 CTCGCCGAGTTCGGCGGTCGGGTCTGCTACCAGAGCTGGGACAAGCCCAACCCGAAGACG 55159
|| || ||||||| ||| |||| |||||||||| |||| ||||||||||||| |||||
Sbjct 200 CTGGCGGAGTTCGCCGGGCGGGCCTGCTACCAGTCGTGGGGCAAGCCCAACCCGCAGACG 141
Query 55160 GCCACCAACCAGGGCTACATCGAGAACATCCAGGAGCAGCGCCACTTCAGCGTGCTCGAG 55219
||||||||| |||||| | | |||||| ||| | | ||| || || ||||||
Sbjct 140 GCCACCAACGCCGGCTACCTGCGGCACATCCTCGAGGTGGGGCACCTCTCGGTCCTCGAG 81
Query 55220 CA---CAGCTCGGCCAGCTTCTACATCGAAGGTGTCTCCCGGTCGCTCACCCACGAGTTG 55276
|| |||| | | | | ||| || ||||||||||||||||| ||||||||| ||
Sbjct 80 CACGGCAGCGTGTCGA---TGTACCTCACCGGTGTCTCCCGGTCGCTGACCCACGAGCTG 24
Query 55277 GTGCGCCACCGCCACTTCTCGT 55298
|| |||||||| ||||||||||
Sbjct 23 GTCCGCCACCGGCACTTCTCGT 2
>seq82131
Length=972
Score = 145 bits (160), Expect = 5e-30
Identities = 160/213 (75%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 42263 CCCGAGGTTGACGTCATCATCTTCGCCCGCGGCGGCGGGTCCAACCAGGACCTCCTTCCC 42322
|||||||| || || ||| || |||| ||||||||||| || ||||||| || |||
Sbjct 150 CCCGAGGTCGAGGTGATCGTCATCGCGCGCGGCGGCGGTTCGCTGGAGGACCTGCTGCCC 209
Query 42323 TGGTCCGACGAGGGCCTCTCCCGGGCCGTGTTCGCCGCTAACACGCCCACGGTCAGCGCC 42382
| ||||||||||| ||| ||| || || ||| || |||||| ||||||||||
Sbjct 210 TTCTCCGACGAGGGGCTCGTCCGCGCGGTCGCCGCGGCGCGCACGCCGGTGGTCAGCGCC 269
Query 42383 ATCGGACACGAGAACGACAAGCCGATGCTGGACCGGGTTGTGGACCTGCGAGCTGCGACT 42442
||||| ||||||| |||||| ||||| || |||| || | ||| |||| || ||||
Sbjct 270 ATCGGCCACGAGAGCGACAACCCGATCCTCGACCTCGTCGCCGACGTGCGCGCCTCGACG 329
Query 42443 CCGACAGATGCGGCAAAACGTGTCGTACCCAAC 42475
||||| || ||||| || || ||||| ||| ||
Sbjct 330 CCGACCGACGCGGCCAAGCGGGTCGTGCCCGAC 362
>seq37323
Length=3330
Score = 140 bits (154), Expect = 2e-28
Identities = 508/789 (64%), Gaps = 65/789 (8%)
Strand=Plus/Minus
Query 45581 GCTCGAGGAGATGGCCGAGCAGAAGGGCGTCGACCTCAAGCACT-CGCCGAAG--TGGCG 45637
||| |||| | ||||||| || ||| |||||| | || |||| | | |||||
Sbjct 1955 GCTGGAGGCGCTGGCCGACGAGGCCGGCTTCGACCCGGCGTCCTACGCCAAGGCGTGGCG 1896
Query 45638 TGAACAGCTGGGCTCACTCGGCGGTGGCAACCACTTCATCGAACTATGTGAGCAGATCGA 45697
| ||||||||||| |||||| | ||||||||||||||||| | | | ||||
Sbjct 1895 GCAGCAGCTGGGCTCGCTCGGCAGCGGCAACCACTTCATCGAGGTCTCCG------TCGA 1842
Query 45698 GGGTGACGGCACCGGATCGCTGTGGCTGTTCCTGCACTCCGGTAGCCGCGGTGTCGGCAA 45757
|| |||| || ||||||||||||||||||| || ||||| || || |||||
Sbjct 1841 ------CGAGACCGATGCGGTGTGGCTGTTCCTGCACTCGGGCAGCCGGGGCGTGGGCAA 1788
Query 45758 CAAGATCGCGCAGAAGCANNNNNNNNNNNNNNNNNNNNNGTGCAAGCGCTGGCACATCGA 45817
| |||||| ||| |||| | | ||| | ||| |
Sbjct 1787 CCGGATCGCCCAGCAGCACATCAAGGTCGCGCAGGCCGAGATGACGCGGCTGTGGATCCA 1728
Query 45818 GCTCGCCAACCCCGACCTGGCCTACCTGGCGTCCGGGACCGACG-AGTTCGGTGCCTACA 45876
||| || ||| ||||||||||||||||| | || || | || |||||| |||||
Sbjct 1727 GCTGCCCGACCGCGACCTGGCCTACCTGGTGGAGGGCAC-GCCGCAGTTCGACCGCTACA 1669
Query 45877 TCCGCGAGCTCCGGTGGGCCCAGGCGTTCGCGCTCGAGAACCGCGCCGAGATGATGGACC 45936
|| ||| || || ||||| ||| ||||| || |||||||| |||||||||||||
Sbjct 1668 TCGCCGAACTGCGATGGGCGCAGCGCTTCGCCCTGCTGAACCGCGAGGAGATGATGGACC 1609
Query 45937 GCTTCCTCAAGGTGTTCACCGACTGGCTCGCCACTGATCTCGACGCCGCCCTCGAGTACG 45996
|| || ||| ||||| | |||| || ||||| || ||
Sbjct 1608 GCGTC------GTG--------------CGCCA--GGTCTCCGAGCA--CCTCG-GTGCG 1574
Query 45997 ACGGCGTCG-AGATCGAGGAACGTCGCATCAACTGCCACCACAACTACACCGAGCGTGTC 46055
||| | | || |||| || ||||||||||||||||||| ||| ||| |
Sbjct 1573 GCGGTGCAGGAGCGCGAG------CGGATCAACTGCCACCACAACTTCACGCAGCAGGAG 1520
Query 46056 GAGATCAACGGCAAGTCCGTGTGGCTCACTCGCAAGGGAGCGATCGACGCTTCGGCGGGC 46115
| | |||| ||| ||||| | |||||||| || ||| | || || | ||
Sbjct 1519 CGGCACTTCGGCCGTGACGTCTGGCTGTCCCGCAAGGGCGCCATCCAGGCG-CGTCAGGG 1461
Query 46116 CG-CTACGGACTCATCCCCGGATCCATGGGCACCAAGTCCTACGTGGTCT-GTGGCAAGG 46173
|| | ||| || |||||||| || ||||| ||| ||||||||||| | ||| ||
Sbjct 1460 CGACCTCGGCCTGATCCCCGGGTCGATGGGGACCGCCTCCTACGTGGTGGAGGGGCGCGG 1401
Query 46174 GCAACGAGTCCGGC-CTGAAGTCAGCACCCCATGGTGCGGGGCGTCGGTTCTCGCGCACG 46232
| || | ||| || | || | || || || || ||||| | | ||||| ||
Sbjct 1400 CGACCGGAT--GGCGCTCGACTCGTCGCCGCACGGCGCCGGGCGCGTGCTGTCGCGGTCG 1343
Query 46233 AAGGCCAAGCAGTTGTTCACCCTCGATGACCTCGCCGACCGCATGCAGGGCATCGAGTAC 46292
||||| | || |||||| |||| | || ||| ||| ||||||||||| |
Sbjct 1342 AAGGCGCGGAAGGCGTTCACGATCGAGCAGCTGCGCGAGGCGATGACGGGCATCGAGTTC 1283
Query 46293 CG--ACATGGTGCCGAGTGGATC---GATGAGATCCCCGACGCCTACAAGCCGATAGACC 46347
|| ||| ||||| || || |||||||| | |||||||||||||| ||||
Sbjct 1282 CGGGACA-----CCGAGGCCTTCCTGGACGAGATCCCGCAGGCCTACAAGCCGATCGACC 1228
Query 46348 AGGTCATGG 46356
|||| ||||
Sbjct 1227 AGGTGATGG 1219
Score = 125 bits (138), Expect = 4e-24
Identities = 140/182 (77%), Gaps = 4/182 (2%)
Strand=Plus/Minus
Query 45253 TCGACGACAACACCATCGAGCAGGC-CGGCGAGATCTCGACGCTGCCGTTCATCCATCCG 45311
|||| ||| ||| |||||||||| | ||| | ||||| |||| |||||||| |||
Sbjct 2658 TCGAGGACGTCACGCTCGAGCAGGCGCAGCGC-ACGTCGACCATGCCCTTCATCCACCCG 2600
Query 45312 CACGTGGCGCTGATGCCGGATGCTCACA-GCGGCAAGGGGTCCGCGGTCGGCACTGTGAT 45370
||| |||| |||||||| || || ||| | ||| || | || |||||||| | |||||
Sbjct 2599 CACCTGGCCCTGATGCCCGACGCGCACCTGGGGCTCGGCG-CCACGGTCGGCTCGGTGAT 2541
Query 45371 CCCGACCGTCGATGCGGTGATCCCCGCGGCGGTCGGCGTCGACATCGGCTGCGGCATGAT 45430
|||||| ||| || ||||| || || ||||| || || |||||||||||||| |||||
Sbjct 2540 CCCGACGCTCGGCGCCGTGATGCCGGCCGCGGTGGGGGTGGACATCGGCTGCGGGATGAT 2481
Query 45431 CG 45432
||
Sbjct 2480 CG 2479
>seq78026
Length=538
Score = 136 bits (150), Expect = 2e-27
Identities = 238/341 (70%), Gaps = 14/341 (4%)
Strand=Plus/Plus
Query 46023 ATCAACTGCCACCACAACTACACCGAGCGTGTCGAGATCAACGGCAAGTCCGTGTGGCTC 46082
||||||||||||||||||||||||| || | || | ||||||| |||| ||||||
Sbjct 55 ATCAACTGCCACCACAACTACACCGCGCAGGAGAAGCACTTCGGCAAGACCGTCTGGCTC 114
Query 46083 ACTCGCAAGGGAGCGATCGACGCTTCGGCGGGCCGCTACGGACTCATCCCCGGATCCATG 46142
| |||||||| ||||||||||| || ||||| ||| || |||||||| || |||
Sbjct 115 TCCCGCAAGGGGGCGATCGACGCGAGCGCCGGCCGGCCCGGGCTGATCCCCGGGTCGATG 174
Query 46143 GGCACCAAGTCCTACGTGGTCTGTGGCAAGGGCAACGAGTCCGGCCTGAAGTCAGCA--C 46200
|| | ||| ||||| ||| |||| ||||||| | || ||| | ||||| |
Sbjct 175 GGAGCGGCGTCGTACGTCGTCGAGGGCAGGGGCAACCCGGTCGCGCTGCA--CAGCAGCC 232
Query 46201 CCCATGGTGCGGGGCGTCGGTTCTCGCG---CACGAAGGCCAAGCAGTTGTTCACCCTCG 46257
| || || |||||||| || |||||| | || | ||||| ||||||| |
Sbjct 233 CGCACGGGGCGGGGCGCGAGTACTCGCGGTCCGCGGCGCGCAAGC---GCTTCACCCGTG 289
Query 46258 ATGACCTCGCCGACCGCATGCAGGGCATCGAGTACCGACATGGT--GCCGAGTGGATCGA 46315
| || |||| || |||||| |||||||||| | | ||| | || || ||||
Sbjct 290 ACGATCTCGACGCGCGCATGACCGGCATCGAGTGGGGCC--GGTCGGACGCGTTCCTCGA 347
Query 46316 TGAGATCCCCGACGCCTACAAGCCGATAGACCAGGTCATGG 46356
|| ||||||||| |||||| || ||| ||||||||
Sbjct 348 CGAACACCCCGACGCGTACAAGGACATCGACGTGGTCATGG 388
>seq117163
Length=525
Score = 113 bits (124), Expect = 3e-20
Identities = 336/525 (64%), Gaps = 48/525 (9%)
Strand=Plus/Plus
Query 45641 ACAGCTGGGCTCACTCGGCGGTGGCAACCACTTCATCGAACTATGTGAGCAGATCGAGGG 45700
|||||||||| | || || ||||||||||||||||| | | | | | |||||
Sbjct 33 ACAGCTGGGCACCCTGGGGTCGGGCAACCACTTCATCGAGGTCTCCGTGGA---CGAGGA 89
Query 45701 TGACGGCACCGGATCGCTGTGGCTGTTCCTGCACTCCGGTAGCCGCGGTGTCGGCAACAA 45760
||| | | ||||| |||||| ||||| || |||||||| |||||||||
Sbjct 90 GGACCG---------GGTGTGGGCGTTCCTCCACTCGGGGAGCCGCGGCGTCGGCAACCG 140
Query 45761 GATCGCGCAGAAGCANNNNNNNNNNNNNNNNNNNNNG-TGC--AAGCGCTGGCACATCGA 45817
|||||||||| ||| | || ||| | ||| |||||
Sbjct 141 GATCGCGCAGGCGCACATCGAGGTCGCGCAGGCCCTGATGACGAAGTGGTGG---ATCGA 197
Query 45818 GCTCGCCAACCCCGACCTGGCCTACCTGGCGTCCGGGACCGACGAGTTCGGTGCCTACAT 45877
||| | ||| |||||| |||||||||| | ||||| | ||||||| |||||
Sbjct 198 TCTCCCGCACCGCGACCTCGCCTACCTGGTGGAGGGGACGGCGGAGTTCGACCGGTACAT 257
Query 45878 CCGCGAGCTCCGGTGGGCCCAGGCGTTCGCGCTCGAGAACCGCGCCGAGATGATGGACCG 45937
| |||||| |||||||| ||| ||||||||| | ||||||| ||||||||||||||
Sbjct 258 CGCCGAGCTGCGGTGGGCGCAGCGGTTCGCGCTGGTCAACCGCGAGGAGATGATGGACCG 317
Query 45938 CTTCCTCAAGGTGTTCACCGACTGGCTCGCCACTGATCTCGACGCCGCCCTCGAGTACGA 45997
| || || | | || |||| || | |||| || | |
Sbjct 318 CGTCGTCCGGCAGCTCTCCGA---GC---------ACCTCGGCG------------AGGC 353
Query 45998 CGGCGTCGAGATCGAGGAACGTCGCATCAACTGCCACCACAACTACACCGAGCGTGTCGA 46057
|| ||| ||| |||| || |||||| |||||||||| ||| ||| |
Sbjct 354 CGTCGTGGAG---CAGGA---GCGGATCAACACGCACCACAACTTCACGCAGCAGGAGCG 407
Query 46058 GATCAACGGCAAGTCCGTGTGGCTCACTCGCAAGGGAGCGATCGACGCTTCGGCGGGCCG 46117
| | ||||| | |||| ||| || | || ||||| |||||| || | ||||
Sbjct 408 GCACTTCGGCAGGACCGTCTGGGTCTCGCGGAAGGGCGCGATCTCGGCGCGCGAGGGCGA 467
Query 46118 CTACGGACTCATCCCCGGATCCATGGGCACCAAGTCCTACGTGGT 46162
||| || ||||||||||| ||||||||| |||||||||||
Sbjct 468 GGCCGGGCTGATCCCCGGATCGATGGGCACCGCCTCCTACGTGGT 512
>seq103996
Length=666
Score = 82.4 bits (90), Expect = 5e-11
Identities = 62/69 (90%), Gaps = 3/69 (4%)
Strand=Plus/Minus
Query 4263 GGGCG-TAGCTCAATTGGAAGAGCAGCGGTCTCCAAAACCGCCGG-TGTAGGTTCGAGTC 4320
||||| | |||||||||| ||||||||||||||||||||||| || || |||||||||||
Sbjct 461 GGGCGGTGGCTCAATTGGTAGAGCAGCGGTCTCCAAAACCGCAGGTTGCAGGTTCGAGTC 402
Query 4321 CTG-CCGCC 4328
||| |||||
Sbjct 401 CTGTCCGCC 393
>seq37623
Length=2350
Score = 82.4 bits (90), Expect = 5e-11
Identities = 62/69 (90%), Gaps = 3/69 (4%)
Strand=Plus/Minus
Query 4263 GGGCG-TAGCTCAATTGGAAGAGCAGCGGTCTCCAAAACCGCCGG-TGTAGGTTCGAGTC 4320
||||| | |||||||||| ||||||||||||||||||||||| || || |||||||||||
Sbjct 1366 GGGCGGTGGCTCAATTGGTAGAGCAGCGGTCTCCAAAACCGCAGGTTGCAGGTTCGAGTC 1307
Query 4321 CTG-CCGCC 4328
||| |||||
Sbjct 1306 CTGTCCGCC 1298
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 298834269732602
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