Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Castanea_20mollissima_20[genbank_20GCA_5F000763605.1_202014-10-06] 133,589 sequences; 833,240,550 total letters Query= NC_030917.1 Length=93577 Score E Sequences producing significant alignments: (Bits) Value seq119262 414 6e-111 seq115307 154 9e-33 seq95548 145 5e-30 seq82131 145 5e-30 seq37323 140 2e-28 seq78026 136 2e-27 seq117163 113 3e-20 seq103996 82.4 5e-11 seq37623 82.4 5e-11 >seq119262 Length=507 Score = 414 bits (458), Expect = 6e-111 Identities = 392/499 (79%), Gaps = 6/499 (1%) Strand=Plus/Plus Query 78662 ACGCTCCTGGAGGGCTTCCTCTTCTACTCGGGCTTCTACCTGCCGATGTACTGGTCGAGC 78721 ||||| || ||| ||||| ||||||||||||||||||||||||||||||||||| Sbjct 10 ACGCTGCTCGAGTCGTTCCTGTTCTACTCGGGCTTCTACCTGCCGATGTACTGGTCCTCG 69 Query 78722 CGCGCCAAGCTGACGAACACCGCGGACGTGATCCGGTTGATTATCCGAGACGAAGCAGTT 78781 ||||||||||| |||||||| || ||| | ||||| | || ||||| ||||| || || Sbjct 70 CGCGCCAAGCTCACGAACACGGCCGACCTCATCCGCCTCATCATCCGCGACGAGGCCGTG 129 Query 78782 CATGGGTACTACATCGGATACAAGTACCAGCGAGGCCTCGAGACCCAGGGGCCGGCGCGG 78841 || |||||||||||||| ||||||| |||| || |||||| || | | || ||| Sbjct 130 CACGGGTACTACATCGGCTACAAGTTCCAGAAGGGGCTCGAGGGCCTGTCGGAGGAGCGC 189 Query 78842 CAGGCTGAGCTCAAGGAGTACACGTTCGATCTGCTCTCGGAGCTCTACGACAACGAGTGT 78901 || ||| ||||||| ||||||||| ||||| | |||||||||||||||||| Sbjct 190 AAGCAGGAGATCAAGGACTACACGTTCTCGCTGCTGTACGAGCTCTACGACAACGAGATC 249 Query 78902 GACTACACCGAGCAGCTCTATGACGACGTCGGACTCACCGAGGATGTCAAGAAGTTCCTG 78961 | |||||| || | ||||| |||| |||||| || |||||||| ||||||||||||||| Sbjct 250 CAGTACACCCAGGACCTCTACGACGGCGTCGGTCTGACCGAGGACGTCAAGAAGTTCCTG 309 Query 78962 CGCTACAACGGCAACAAGGCGCTGATGAACCTCGGCTACGAAGCACTGTTCCCCAAGGAA 79021 | |||||||| |||||||||||| |||||||| |||||||| | ||||||| ||| Sbjct 310 CACTACAACGCCAACAAGGCGCTCATGAACCTGGGCTACGAGCCGATGTTCCCGAAG--- 366 Query 79022 GAGACCATGGCAG---ACCCGGCCATCATGTCCGCGCTCTCACCAGGCGGCGACGAGAAC 79078 ||||| | || | ||||||| ||| |||| || || || || || |||||||||| Sbjct 367 GAGACGACGGACGTGAACCCGGCGATCCTGTCGGCACTGTCCCCGAACGCCGACGAGAAC 426 Query 79079 CACGACTTCTTCTCCGGGTCGGGCTCGAGCTACGTCATCGGCAAAGCTGAAGCCACGGCA 79138 |||||||||||||||||| |||||| |||||||||||||| || || |||| | Sbjct 427 CACGACTTCTTCTCCGGGAGCGGCTCGTCGTACGTCATCGGCAAGGCGGAGACCACCGAG 486 Query 79139 GATGAGGACTGGGACTTCT 79157 || |||||||||||||||| Sbjct 487 GACGAGGACTGGGACTTCT 505 >seq115307 Length=544 Score = 154 bits (170), Expect = 9e-33 Identities = 159/208 (76%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 69624 ATGGCAAATGACACCGTCATCACCGTCATCGGTAACCTGACCGCCGACCCCGAACTCCGG 69683 ||||| ||| ||||||||||| | ||||| ||||| || |||||||||||| || Sbjct 208 ATGGCGGGTGAAACCGTCATCACGCTGATCGGGAACCTCACGAACGACCCCGAACTGCGC 149 Query 69684 TTCACGCCCTCCGGTGCCGCGGTCGCGAACTTCACCGTCGCGTCGACCCCGCGGTACTTC 69743 ||||| || || ||||||||||| || |||||||| ||||| ||||| || || ||| Sbjct 148 TTCACCCCGTCGGGTGCCGCGGTGGCCAACTTCACGGTCGCCTCGACTCCCCGCACGTTC 89 Query 69744 GACAAGCAGTCGAACGAGTGGAAGGATGCCGAGGCACTCTTCCTGCGCTGCAACGTCTGG 69803 ||| |||||||||||||||||||| | |||| | || ||| |||| ||| ||||| Sbjct 88 GACCGTCAGTCGAACGAGTGGAAGGACGGCGAGACGCTGTTCATGCGTTGCGCGATCTGG 29 Query 69804 CGCGAGTACGCCGAGAACGTGACTGAGT 69831 ||||| || |||||||| | |||| Sbjct 28 CGCGAAGCGGCGGAGAACGTCGCCGAGT 1 >seq95548 Length=770 Score = 145 bits (160), Expect = 5e-30 Identities = 154/202 (76%), Gaps = 6/202 (3%) Strand=Plus/Minus Query 55100 CTCGCCGAGTTCGGCGGTCGGGTCTGCTACCAGAGCTGGGACAAGCCCAACCCGAAGACG 55159 || || ||||||| ||| |||| |||||||||| |||| ||||||||||||| ||||| Sbjct 200 CTGGCGGAGTTCGCCGGGCGGGCCTGCTACCAGTCGTGGGGCAAGCCCAACCCGCAGACG 141 Query 55160 GCCACCAACCAGGGCTACATCGAGAACATCCAGGAGCAGCGCCACTTCAGCGTGCTCGAG 55219 ||||||||| |||||| | | |||||| ||| | | ||| || || |||||| Sbjct 140 GCCACCAACGCCGGCTACCTGCGGCACATCCTCGAGGTGGGGCACCTCTCGGTCCTCGAG 81 Query 55220 CA---CAGCTCGGCCAGCTTCTACATCGAAGGTGTCTCCCGGTCGCTCACCCACGAGTTG 55276 || |||| | | | | ||| || ||||||||||||||||| ||||||||| || Sbjct 80 CACGGCAGCGTGTCGA---TGTACCTCACCGGTGTCTCCCGGTCGCTGACCCACGAGCTG 24 Query 55277 GTGCGCCACCGCCACTTCTCGT 55298 || |||||||| |||||||||| Sbjct 23 GTCCGCCACCGGCACTTCTCGT 2 >seq82131 Length=972 Score = 145 bits (160), Expect = 5e-30 Identities = 160/213 (75%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 42263 CCCGAGGTTGACGTCATCATCTTCGCCCGCGGCGGCGGGTCCAACCAGGACCTCCTTCCC 42322 |||||||| || || ||| || |||| ||||||||||| || ||||||| || ||| Sbjct 150 CCCGAGGTCGAGGTGATCGTCATCGCGCGCGGCGGCGGTTCGCTGGAGGACCTGCTGCCC 209 Query 42323 TGGTCCGACGAGGGCCTCTCCCGGGCCGTGTTCGCCGCTAACACGCCCACGGTCAGCGCC 42382 | ||||||||||| ||| ||| || || ||| || |||||| |||||||||| Sbjct 210 TTCTCCGACGAGGGGCTCGTCCGCGCGGTCGCCGCGGCGCGCACGCCGGTGGTCAGCGCC 269 Query 42383 ATCGGACACGAGAACGACAAGCCGATGCTGGACCGGGTTGTGGACCTGCGAGCTGCGACT 42442 ||||| ||||||| |||||| ||||| || |||| || | ||| |||| || |||| Sbjct 270 ATCGGCCACGAGAGCGACAACCCGATCCTCGACCTCGTCGCCGACGTGCGCGCCTCGACG 329 Query 42443 CCGACAGATGCGGCAAAACGTGTCGTACCCAAC 42475 ||||| || ||||| || || ||||| ||| || Sbjct 330 CCGACCGACGCGGCCAAGCGGGTCGTGCCCGAC 362 >seq37323 Length=3330 Score = 140 bits (154), Expect = 2e-28 Identities = 508/789 (64%), Gaps = 65/789 (8%) Strand=Plus/Minus Query 45581 GCTCGAGGAGATGGCCGAGCAGAAGGGCGTCGACCTCAAGCACT-CGCCGAAG--TGGCG 45637 ||| |||| | ||||||| || ||| |||||| | || |||| | | ||||| Sbjct 1955 GCTGGAGGCGCTGGCCGACGAGGCCGGCTTCGACCCGGCGTCCTACGCCAAGGCGTGGCG 1896 Query 45638 TGAACAGCTGGGCTCACTCGGCGGTGGCAACCACTTCATCGAACTATGTGAGCAGATCGA 45697 | ||||||||||| |||||| | ||||||||||||||||| | | | |||| Sbjct 1895 GCAGCAGCTGGGCTCGCTCGGCAGCGGCAACCACTTCATCGAGGTCTCCG------TCGA 1842 Query 45698 GGGTGACGGCACCGGATCGCTGTGGCTGTTCCTGCACTCCGGTAGCCGCGGTGTCGGCAA 45757 || |||| || ||||||||||||||||||| || ||||| || || ||||| Sbjct 1841 ------CGAGACCGATGCGGTGTGGCTGTTCCTGCACTCGGGCAGCCGGGGCGTGGGCAA 1788 Query 45758 CAAGATCGCGCAGAAGCANNNNNNNNNNNNNNNNNNNNNGTGCAAGCGCTGGCACATCGA 45817 | |||||| ||| |||| | | ||| | ||| | Sbjct 1787 CCGGATCGCCCAGCAGCACATCAAGGTCGCGCAGGCCGAGATGACGCGGCTGTGGATCCA 1728 Query 45818 GCTCGCCAACCCCGACCTGGCCTACCTGGCGTCCGGGACCGACG-AGTTCGGTGCCTACA 45876 ||| || ||| ||||||||||||||||| | || || | || |||||| ||||| Sbjct 1727 GCTGCCCGACCGCGACCTGGCCTACCTGGTGGAGGGCAC-GCCGCAGTTCGACCGCTACA 1669 Query 45877 TCCGCGAGCTCCGGTGGGCCCAGGCGTTCGCGCTCGAGAACCGCGCCGAGATGATGGACC 45936 || ||| || || ||||| ||| ||||| || |||||||| ||||||||||||| Sbjct 1668 TCGCCGAACTGCGATGGGCGCAGCGCTTCGCCCTGCTGAACCGCGAGGAGATGATGGACC 1609 Query 45937 GCTTCCTCAAGGTGTTCACCGACTGGCTCGCCACTGATCTCGACGCCGCCCTCGAGTACG 45996 || || ||| ||||| | |||| || ||||| || || Sbjct 1608 GCGTC------GTG--------------CGCCA--GGTCTCCGAGCA--CCTCG-GTGCG 1574 Query 45997 ACGGCGTCG-AGATCGAGGAACGTCGCATCAACTGCCACCACAACTACACCGAGCGTGTC 46055 ||| | | || |||| || ||||||||||||||||||| ||| ||| | Sbjct 1573 GCGGTGCAGGAGCGCGAG------CGGATCAACTGCCACCACAACTTCACGCAGCAGGAG 1520 Query 46056 GAGATCAACGGCAAGTCCGTGTGGCTCACTCGCAAGGGAGCGATCGACGCTTCGGCGGGC 46115 | | |||| ||| ||||| | |||||||| || ||| | || || | || Sbjct 1519 CGGCACTTCGGCCGTGACGTCTGGCTGTCCCGCAAGGGCGCCATCCAGGCG-CGTCAGGG 1461 Query 46116 CG-CTACGGACTCATCCCCGGATCCATGGGCACCAAGTCCTACGTGGTCT-GTGGCAAGG 46173 || | ||| || |||||||| || ||||| ||| ||||||||||| | ||| || Sbjct 1460 CGACCTCGGCCTGATCCCCGGGTCGATGGGGACCGCCTCCTACGTGGTGGAGGGGCGCGG 1401 Query 46174 GCAACGAGTCCGGC-CTGAAGTCAGCACCCCATGGTGCGGGGCGTCGGTTCTCGCGCACG 46232 | || | ||| || | || | || || || || ||||| | | ||||| || Sbjct 1400 CGACCGGAT--GGCGCTCGACTCGTCGCCGCACGGCGCCGGGCGCGTGCTGTCGCGGTCG 1343 Query 46233 AAGGCCAAGCAGTTGTTCACCCTCGATGACCTCGCCGACCGCATGCAGGGCATCGAGTAC 46292 ||||| | || |||||| |||| | || ||| ||| ||||||||||| | Sbjct 1342 AAGGCGCGGAAGGCGTTCACGATCGAGCAGCTGCGCGAGGCGATGACGGGCATCGAGTTC 1283 Query 46293 CG--ACATGGTGCCGAGTGGATC---GATGAGATCCCCGACGCCTACAAGCCGATAGACC 46347 || ||| ||||| || || |||||||| | |||||||||||||| |||| Sbjct 1282 CGGGACA-----CCGAGGCCTTCCTGGACGAGATCCCGCAGGCCTACAAGCCGATCGACC 1228 Query 46348 AGGTCATGG 46356 |||| |||| Sbjct 1227 AGGTGATGG 1219 Score = 125 bits (138), Expect = 4e-24 Identities = 140/182 (77%), Gaps = 4/182 (2%) Strand=Plus/Minus Query 45253 TCGACGACAACACCATCGAGCAGGC-CGGCGAGATCTCGACGCTGCCGTTCATCCATCCG 45311 |||| ||| ||| |||||||||| | ||| | ||||| |||| |||||||| ||| Sbjct 2658 TCGAGGACGTCACGCTCGAGCAGGCGCAGCGC-ACGTCGACCATGCCCTTCATCCACCCG 2600 Query 45312 CACGTGGCGCTGATGCCGGATGCTCACA-GCGGCAAGGGGTCCGCGGTCGGCACTGTGAT 45370 ||| |||| |||||||| || || ||| | ||| || | || |||||||| | ||||| Sbjct 2599 CACCTGGCCCTGATGCCCGACGCGCACCTGGGGCTCGGCG-CCACGGTCGGCTCGGTGAT 2541 Query 45371 CCCGACCGTCGATGCGGTGATCCCCGCGGCGGTCGGCGTCGACATCGGCTGCGGCATGAT 45430 |||||| ||| || ||||| || || ||||| || || |||||||||||||| ||||| Sbjct 2540 CCCGACGCTCGGCGCCGTGATGCCGGCCGCGGTGGGGGTGGACATCGGCTGCGGGATGAT 2481 Query 45431 CG 45432 || Sbjct 2480 CG 2479 >seq78026 Length=538 Score = 136 bits (150), Expect = 2e-27 Identities = 238/341 (70%), Gaps = 14/341 (4%) Strand=Plus/Plus Query 46023 ATCAACTGCCACCACAACTACACCGAGCGTGTCGAGATCAACGGCAAGTCCGTGTGGCTC 46082 ||||||||||||||||||||||||| || | || | ||||||| |||| |||||| Sbjct 55 ATCAACTGCCACCACAACTACACCGCGCAGGAGAAGCACTTCGGCAAGACCGTCTGGCTC 114 Query 46083 ACTCGCAAGGGAGCGATCGACGCTTCGGCGGGCCGCTACGGACTCATCCCCGGATCCATG 46142 | |||||||| ||||||||||| || ||||| ||| || |||||||| || ||| Sbjct 115 TCCCGCAAGGGGGCGATCGACGCGAGCGCCGGCCGGCCCGGGCTGATCCCCGGGTCGATG 174 Query 46143 GGCACCAAGTCCTACGTGGTCTGTGGCAAGGGCAACGAGTCCGGCCTGAAGTCAGCA--C 46200 || | ||| ||||| ||| |||| ||||||| | || ||| | ||||| | Sbjct 175 GGAGCGGCGTCGTACGTCGTCGAGGGCAGGGGCAACCCGGTCGCGCTGCA--CAGCAGCC 232 Query 46201 CCCATGGTGCGGGGCGTCGGTTCTCGCG---CACGAAGGCCAAGCAGTTGTTCACCCTCG 46257 | || || |||||||| || |||||| | || | ||||| ||||||| | Sbjct 233 CGCACGGGGCGGGGCGCGAGTACTCGCGGTCCGCGGCGCGCAAGC---GCTTCACCCGTG 289 Query 46258 ATGACCTCGCCGACCGCATGCAGGGCATCGAGTACCGACATGGT--GCCGAGTGGATCGA 46315 | || |||| || |||||| |||||||||| | | ||| | || || |||| Sbjct 290 ACGATCTCGACGCGCGCATGACCGGCATCGAGTGGGGCC--GGTCGGACGCGTTCCTCGA 347 Query 46316 TGAGATCCCCGACGCCTACAAGCCGATAGACCAGGTCATGG 46356 || ||||||||| |||||| || ||| |||||||| Sbjct 348 CGAACACCCCGACGCGTACAAGGACATCGACGTGGTCATGG 388 >seq117163 Length=525 Score = 113 bits (124), Expect = 3e-20 Identities = 336/525 (64%), Gaps = 48/525 (9%) Strand=Plus/Plus Query 45641 ACAGCTGGGCTCACTCGGCGGTGGCAACCACTTCATCGAACTATGTGAGCAGATCGAGGG 45700 |||||||||| | || || ||||||||||||||||| | | | | | ||||| Sbjct 33 ACAGCTGGGCACCCTGGGGTCGGGCAACCACTTCATCGAGGTCTCCGTGGA---CGAGGA 89 Query 45701 TGACGGCACCGGATCGCTGTGGCTGTTCCTGCACTCCGGTAGCCGCGGTGTCGGCAACAA 45760 ||| | | ||||| |||||| ||||| || |||||||| ||||||||| Sbjct 90 GGACCG---------GGTGTGGGCGTTCCTCCACTCGGGGAGCCGCGGCGTCGGCAACCG 140 Query 45761 GATCGCGCAGAAGCANNNNNNNNNNNNNNNNNNNNNG-TGC--AAGCGCTGGCACATCGA 45817 |||||||||| ||| | || ||| | ||| ||||| Sbjct 141 GATCGCGCAGGCGCACATCGAGGTCGCGCAGGCCCTGATGACGAAGTGGTGG---ATCGA 197 Query 45818 GCTCGCCAACCCCGACCTGGCCTACCTGGCGTCCGGGACCGACGAGTTCGGTGCCTACAT 45877 ||| | ||| |||||| |||||||||| | ||||| | ||||||| ||||| Sbjct 198 TCTCCCGCACCGCGACCTCGCCTACCTGGTGGAGGGGACGGCGGAGTTCGACCGGTACAT 257 Query 45878 CCGCGAGCTCCGGTGGGCCCAGGCGTTCGCGCTCGAGAACCGCGCCGAGATGATGGACCG 45937 | |||||| |||||||| ||| ||||||||| | ||||||| |||||||||||||| Sbjct 258 CGCCGAGCTGCGGTGGGCGCAGCGGTTCGCGCTGGTCAACCGCGAGGAGATGATGGACCG 317 Query 45938 CTTCCTCAAGGTGTTCACCGACTGGCTCGCCACTGATCTCGACGCCGCCCTCGAGTACGA 45997 | || || | | || |||| || | |||| || | | Sbjct 318 CGTCGTCCGGCAGCTCTCCGA---GC---------ACCTCGGCG------------AGGC 353 Query 45998 CGGCGTCGAGATCGAGGAACGTCGCATCAACTGCCACCACAACTACACCGAGCGTGTCGA 46057 || ||| ||| |||| || |||||| |||||||||| ||| ||| | Sbjct 354 CGTCGTGGAG---CAGGA---GCGGATCAACACGCACCACAACTTCACGCAGCAGGAGCG 407 Query 46058 GATCAACGGCAAGTCCGTGTGGCTCACTCGCAAGGGAGCGATCGACGCTTCGGCGGGCCG 46117 | | ||||| | |||| ||| || | || ||||| |||||| || | |||| Sbjct 408 GCACTTCGGCAGGACCGTCTGGGTCTCGCGGAAGGGCGCGATCTCGGCGCGCGAGGGCGA 467 Query 46118 CTACGGACTCATCCCCGGATCCATGGGCACCAAGTCCTACGTGGT 46162 ||| || ||||||||||| ||||||||| ||||||||||| Sbjct 468 GGCCGGGCTGATCCCCGGATCGATGGGCACCGCCTCCTACGTGGT 512 >seq103996 Length=666 Score = 82.4 bits (90), Expect = 5e-11 Identities = 62/69 (90%), Gaps = 3/69 (4%) Strand=Plus/Minus Query 4263 GGGCG-TAGCTCAATTGGAAGAGCAGCGGTCTCCAAAACCGCCGG-TGTAGGTTCGAGTC 4320 ||||| | |||||||||| ||||||||||||||||||||||| || || ||||||||||| Sbjct 461 GGGCGGTGGCTCAATTGGTAGAGCAGCGGTCTCCAAAACCGCAGGTTGCAGGTTCGAGTC 402 Query 4321 CTG-CCGCC 4328 ||| ||||| Sbjct 401 CTGTCCGCC 393 >seq37623 Length=2350 Score = 82.4 bits (90), Expect = 5e-11 Identities = 62/69 (90%), Gaps = 3/69 (4%) Strand=Plus/Minus Query 4263 GGGCG-TAGCTCAATTGGAAGAGCAGCGGTCTCCAAAACCGCCGG-TGTAGGTTCGAGTC 4320 ||||| | |||||||||| ||||||||||||||||||||||| || || ||||||||||| Sbjct 1366 GGGCGGTGGCTCAATTGGTAGAGCAGCGGTCTCCAAAACCGCAGGTTGCAGGTTCGAGTC 1307 Query 4321 CTG-CCGCC 4328 ||| ||||| Sbjct 1306 CTGTCCGCC 1298 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 298834269732602