Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Castanea_20mollissima_20[genbank_20GCA_5F000763605.1_202014-10-06] 133,589 sequences; 833,240,550 total letters Query= NC_030932.1 Length=43505 Score E Sequences producing significant alignments: (Bits) Value seq93073 156 1e-33 seq81310 145 2e-30 seq34920 140 9e-29 seq79475 138 3e-28 seq26084 138 3e-28 seq30687 118 3e-22 >seq93073 Length=808 Score = 156 bits (172), Expect = 1e-33 Identities = 138/172 (80%), Gaps = 3/172 (2%) Strand=Plus/Plus Query 23431 GCTACGGCGTCGAGATCGTCGTCGAAGAGATCGGCGTATGTGTCGAGCGTCATAGCGGCT 23490 || |||||||| |||||||||||||| ||||||||||| |||||| ||||| || || Sbjct 32 GCGACGGCGTCCAGATCGTCGTCGAACAGATCGGCGTAGACGTCGAGAGTCATGGCTGCG 91 Query 23491 GACGAGTGCCCGAGCATCCGTTGCACTGCCTTCACGTTCGCGCCCGCCGAGATCGCGAGG 23550 || | ||| |||||||| || || |||||||||||||||||||| | |||||||||| Sbjct 92 GAGGCGTGTCCGAGCATGCGCTGGACTGCCTTCACGTTCGCGCCGGAGCGGATCGCGAGG 151 Query 23551 CTCGCGGCAGTGTGGCGCAAGTCGTGCGCGGTGACCCGAGGGAAGGCGCGCG 23602 |||||||| ||||| || | ||||||| |||| | | |||| |||||| Sbjct 152 CTCGCGGCGGTGTGTCGGAGGTCGTGCAGCGTGAGCGGCGGGA---CGCGCG 200 >seq81310 Length=1001 Score = 145 bits (160), Expect = 2e-30 Identities = 135/167 (81%), Gaps = 6/167 (4%) Strand=Plus/Minus Query 23419 TCGAGCGCGTCGGCTACGGC-GTCGAGATCGTCGTCGAAGAGATCGGCGTATGTGTCGAG 23477 ||||||||||| || || || ||| || ||||||||||| || |||||||| |||||||| Sbjct 536 TCGAGCGCGTCCGCAACCGCCGTC-AGGTCGTCGTCGAACAGGTCGGCGTAGGTGTCGAG 478 Query 23478 CGTCATAGCGGCTGACGAGTGCCCGAGCATCCGTTGCACTGCCTTCACGTTCGCGCC--C 23535 ||||| || || || | ||| ||||||||||| ||||| ||||||||||||||||| | Sbjct 477 AGTCATTGCCGCGGAGGCGTGACCGAGCATCCGCTGCACCGCCTTCACGTTCGCGCCGGC 418 Query 23536 GCCGAGATCGCGAGGCTCGCGGCAGTGTGGCGCAAGTCGTGCGCGGT 23582 ||| | | ||||||||||| || ||||| || | ||||| | ||| Sbjct 417 GCCCACA--GCGAGGCTCGCCGCCGTGTGCCGGAGCTCGTGTGGGGT 373 >seq34920 Length=2680 Score = 140 bits (154), Expect = 9e-29 Identities = 113/137 (82%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 23440 TCGAGATCGTCGTCGAAGAGATCGGCGTATGTGTCGAGCGTCATAGCGGCTGACGAGTGC 23499 ||||| || ||||||||||| || ||||| |||||||||||| || || |||| ||| Sbjct 1925 TCGAGGTCCTCGTCGAAGAGGTCCGCGTACACGTCGAGCGTCATCGCTGCGGACGCGTGG 1984 Query 23500 CCGAGCATCCGTTGCACTGCCTTCACGTTCGCGCCCGCCGAGATCGCGAGGCTCGCGGCA 23559 ||||||||||| ||||| ||||||||||||||||| || | ||||||||||||||| Sbjct 1985 CCGAGCATCCGCTGCACCGCCTTCACGTTCGCGCCGGCGCTCACCGCGAGGCTCGCGGCC 2044 Query 23560 GTGTGGCGCAAGTCGTG 23576 ||||| || | |||||| Sbjct 2045 GTGTGCCGGAGGTCGTG 2061 >seq79475 Length=1042 Score = 138 bits (152), Expect = 3e-28 Identities = 130/163 (80%), Gaps = 2/163 (1%) Strand=Plus/Plus Query 23417 GGTCGAGCGCGTCGGCTA-CGGCGTCGAGATCGTCGTCGAAGAGATCGGCGTATGTGTCG 23475 ||||||||||||| || | || |||| || ||| | |||||||| |||||| | |||||| Sbjct 176 GGTCGAGCGCGTCCGCAACCGCCGTC-AGGTCGGCATCGAAGAGGTCGGCGGAGGTGTCG 234 Query 23476 AGCGTCATAGCGGCTGACGAGTGCCCGAGCATCCGTTGCACTGCCTTCACGTTCGCGCCC 23535 |||||||| || || |||| ||| ||||| ||||| ||||| ||||||||||||| ||| Sbjct 235 AGCGTCATCGCTGCAGACGCGTGGCCGAGGATCCGCTGCACCGCCTTCACGTTCGACCCC 294 Query 23536 GCCGAGATCGCGAGGCTCGCGGCAGTGTGGCGCAAGTCGTGCG 23578 || | || ||||||||| || ||||| || | ||||||| Sbjct 295 GCGCCCACCGGGAGGCTCGCCGCCGTGTGTCGGAGCTCGTGCG 337 >seq26084 Length=4681 Score = 138 bits (152), Expect = 3e-28 Identities = 133/168 (79%), Gaps = 2/168 (1%) Strand=Plus/Minus Query 23418 GTCGAG-CGCGTCGGCTACGGCGTCGAGATCGTCGTCGAAGAGATCGGCGTATGTGTCGA 23476 |||||| |||| |||| |||| ||| || |||||||||||||| || ||||| ||||| Sbjct 2467 GTCGAGACGCG-CGGCGACGGTGTCCAGGTCGTCGTCGAAGAGGTCCGCGTAGACGTCGA 2409 Query 23477 GCGTCATAGCGGCTGACGAGTGCCCGAGCATCCGTTGCACTGCCTTCACGTTCGCGCCCG 23536 ||||||| || || || | || || |||||||| ||||| ||||||||||||||||| | Sbjct 2408 GCGTCATTGCAGCGGATGCATGGCCCAGCATCCGCTGCACGGCCTTCACGTTCGCGCCGG 2349 Query 23537 CCGAGATCGCGAGGCTCGCGGCAGTGTGGCGCAAGTCGTGCGCGGTGA 23584 || | || ||||||||||| ||||| | || |||||| | |||| Sbjct 2348 CCTGCACAGCAAGGCTCGCGGCCGTGTGCCTCAGGTCGTGAGGAGTGA 2301 >seq30687 Length=3404 Score = 118 bits (130), Expect = 3e-22 Identities = 112/143 (78%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 23434 ACGGCGTCGAGATCGTCGTCGAAGAGATCGGCGTATGTGTCGAGCGTCATAGCGGCTGAC 23493 ||||||| | ||||||||||| || |||||||| ||||||| ||||| || || || Sbjct 2783 ACGGCGTTCAAGTCGTCGTCGAACAGGTCGGCGTAGATGTCGAGGGTCATCGCCGCGGAG 2724 Query 23494 GAGTGCCCGAGCATCCGTTGCACTGCCTTCACGTTCGCGCCCGCCGAGATCGCGAGGCTC 23553 | ||| |||||||| || ||||| ||||| ||||| ||||| || ||||| | |||| Sbjct 2723 GCGTGACCGAGCATTCGCTGCACGGCCTTGACGTTGGCGCCTGCGCTGATCGACATGCTC 2664 Query 23554 GCGGCAGTGTGGCGCAAGTCGTG 23576 || || ||||| |||| |||||| Sbjct 2663 GCTGCGGTGTGACGCAGGTCGTG 2641 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 138873744903606