Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Castanea_20mollissima_20[genbank_20GCA_5F000763605.1_202014-10-06]
133,589 sequences; 833,240,550 total letters
Query= NC_030932.1
Length=43505
Score E
Sequences producing significant alignments: (Bits) Value
seq93073 156 1e-33
seq81310 145 2e-30
seq34920 140 9e-29
seq79475 138 3e-28
seq26084 138 3e-28
seq30687 118 3e-22
>seq93073
Length=808
Score = 156 bits (172), Expect = 1e-33
Identities = 138/172 (80%), Gaps = 3/172 (2%)
Strand=Plus/Plus
Query 23431 GCTACGGCGTCGAGATCGTCGTCGAAGAGATCGGCGTATGTGTCGAGCGTCATAGCGGCT 23490
|| |||||||| |||||||||||||| ||||||||||| |||||| ||||| || ||
Sbjct 32 GCGACGGCGTCCAGATCGTCGTCGAACAGATCGGCGTAGACGTCGAGAGTCATGGCTGCG 91
Query 23491 GACGAGTGCCCGAGCATCCGTTGCACTGCCTTCACGTTCGCGCCCGCCGAGATCGCGAGG 23550
|| | ||| |||||||| || || |||||||||||||||||||| | ||||||||||
Sbjct 92 GAGGCGTGTCCGAGCATGCGCTGGACTGCCTTCACGTTCGCGCCGGAGCGGATCGCGAGG 151
Query 23551 CTCGCGGCAGTGTGGCGCAAGTCGTGCGCGGTGACCCGAGGGAAGGCGCGCG 23602
|||||||| ||||| || | ||||||| |||| | | |||| ||||||
Sbjct 152 CTCGCGGCGGTGTGTCGGAGGTCGTGCAGCGTGAGCGGCGGGA---CGCGCG 200
>seq81310
Length=1001
Score = 145 bits (160), Expect = 2e-30
Identities = 135/167 (81%), Gaps = 6/167 (4%)
Strand=Plus/Minus
Query 23419 TCGAGCGCGTCGGCTACGGC-GTCGAGATCGTCGTCGAAGAGATCGGCGTATGTGTCGAG 23477
||||||||||| || || || ||| || ||||||||||| || |||||||| ||||||||
Sbjct 536 TCGAGCGCGTCCGCAACCGCCGTC-AGGTCGTCGTCGAACAGGTCGGCGTAGGTGTCGAG 478
Query 23478 CGTCATAGCGGCTGACGAGTGCCCGAGCATCCGTTGCACTGCCTTCACGTTCGCGCC--C 23535
||||| || || || | ||| ||||||||||| ||||| ||||||||||||||||| |
Sbjct 477 AGTCATTGCCGCGGAGGCGTGACCGAGCATCCGCTGCACCGCCTTCACGTTCGCGCCGGC 418
Query 23536 GCCGAGATCGCGAGGCTCGCGGCAGTGTGGCGCAAGTCGTGCGCGGT 23582
||| | | ||||||||||| || ||||| || | ||||| | |||
Sbjct 417 GCCCACA--GCGAGGCTCGCCGCCGTGTGCCGGAGCTCGTGTGGGGT 373
>seq34920
Length=2680
Score = 140 bits (154), Expect = 9e-29
Identities = 113/137 (82%), Gaps = 0/137 (0%)
Strand=Plus/Plus
Query 23440 TCGAGATCGTCGTCGAAGAGATCGGCGTATGTGTCGAGCGTCATAGCGGCTGACGAGTGC 23499
||||| || ||||||||||| || ||||| |||||||||||| || || |||| |||
Sbjct 1925 TCGAGGTCCTCGTCGAAGAGGTCCGCGTACACGTCGAGCGTCATCGCTGCGGACGCGTGG 1984
Query 23500 CCGAGCATCCGTTGCACTGCCTTCACGTTCGCGCCCGCCGAGATCGCGAGGCTCGCGGCA 23559
||||||||||| ||||| ||||||||||||||||| || | |||||||||||||||
Sbjct 1985 CCGAGCATCCGCTGCACCGCCTTCACGTTCGCGCCGGCGCTCACCGCGAGGCTCGCGGCC 2044
Query 23560 GTGTGGCGCAAGTCGTG 23576
||||| || | ||||||
Sbjct 2045 GTGTGCCGGAGGTCGTG 2061
>seq79475
Length=1042
Score = 138 bits (152), Expect = 3e-28
Identities = 130/163 (80%), Gaps = 2/163 (1%)
Strand=Plus/Plus
Query 23417 GGTCGAGCGCGTCGGCTA-CGGCGTCGAGATCGTCGTCGAAGAGATCGGCGTATGTGTCG 23475
||||||||||||| || | || |||| || ||| | |||||||| |||||| | ||||||
Sbjct 176 GGTCGAGCGCGTCCGCAACCGCCGTC-AGGTCGGCATCGAAGAGGTCGGCGGAGGTGTCG 234
Query 23476 AGCGTCATAGCGGCTGACGAGTGCCCGAGCATCCGTTGCACTGCCTTCACGTTCGCGCCC 23535
|||||||| || || |||| ||| ||||| ||||| ||||| ||||||||||||| |||
Sbjct 235 AGCGTCATCGCTGCAGACGCGTGGCCGAGGATCCGCTGCACCGCCTTCACGTTCGACCCC 294
Query 23536 GCCGAGATCGCGAGGCTCGCGGCAGTGTGGCGCAAGTCGTGCG 23578
|| | || ||||||||| || ||||| || | |||||||
Sbjct 295 GCGCCCACCGGGAGGCTCGCCGCCGTGTGTCGGAGCTCGTGCG 337
>seq26084
Length=4681
Score = 138 bits (152), Expect = 3e-28
Identities = 133/168 (79%), Gaps = 2/168 (1%)
Strand=Plus/Minus
Query 23418 GTCGAG-CGCGTCGGCTACGGCGTCGAGATCGTCGTCGAAGAGATCGGCGTATGTGTCGA 23476
|||||| |||| |||| |||| ||| || |||||||||||||| || ||||| |||||
Sbjct 2467 GTCGAGACGCG-CGGCGACGGTGTCCAGGTCGTCGTCGAAGAGGTCCGCGTAGACGTCGA 2409
Query 23477 GCGTCATAGCGGCTGACGAGTGCCCGAGCATCCGTTGCACTGCCTTCACGTTCGCGCCCG 23536
||||||| || || || | || || |||||||| ||||| ||||||||||||||||| |
Sbjct 2408 GCGTCATTGCAGCGGATGCATGGCCCAGCATCCGCTGCACGGCCTTCACGTTCGCGCCGG 2349
Query 23537 CCGAGATCGCGAGGCTCGCGGCAGTGTGGCGCAAGTCGTGCGCGGTGA 23584
|| | || ||||||||||| ||||| | || |||||| | ||||
Sbjct 2348 CCTGCACAGCAAGGCTCGCGGCCGTGTGCCTCAGGTCGTGAGGAGTGA 2301
>seq30687
Length=3404
Score = 118 bits (130), Expect = 3e-22
Identities = 112/143 (78%), Gaps = 0/143 (0%)
Strand=Plus/Minus
Query 23434 ACGGCGTCGAGATCGTCGTCGAAGAGATCGGCGTATGTGTCGAGCGTCATAGCGGCTGAC 23493
||||||| | ||||||||||| || |||||||| ||||||| ||||| || || ||
Sbjct 2783 ACGGCGTTCAAGTCGTCGTCGAACAGGTCGGCGTAGATGTCGAGGGTCATCGCCGCGGAG 2724
Query 23494 GAGTGCCCGAGCATCCGTTGCACTGCCTTCACGTTCGCGCCCGCCGAGATCGCGAGGCTC 23553
| ||| |||||||| || ||||| ||||| ||||| ||||| || ||||| | ||||
Sbjct 2723 GCGTGACCGAGCATTCGCTGCACGGCCTTGACGTTGGCGCCTGCGCTGATCGACATGCTC 2664
Query 23554 GCGGCAGTGTGGCGCAAGTCGTG 23576
|| || ||||| |||| ||||||
Sbjct 2663 GCTGCGGTGTGACGCAGGTCGTG 2641
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 138873744903606
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |