Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Castanea_20mollissima_20[genbank_20GCA_5F000763605.1_202014-10-06] 133,589 sequences; 833,240,550 total letters Query= NC_030936.1 Length=93843 Score E Sequences producing significant alignments: (Bits) Value seq115307 174 9e-39 seq59665 170 1e-37 seq78026 129 4e-25 seq37323 125 4e-24 seq82131 93.3 3e-14 seq109048 91.5 9e-14 >seq115307 Length=544 Score = 174 bits (192), Expect = 9e-39 Identities = 158/199 (79%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 72307 GACACCGTGATCACCGTGATCGGAAACCTGACCGCCGATCCCGAACTGCGCTTCACCCCC 72366 || ||||| ||||| ||||||| ||||| || ||| |||||||||||||||||||| Sbjct 199 GAAACCGTCATCACGCTGATCGGGAACCTCACGAACGACCCCGAACTGCGCTTCACCCCG 140 Query 72367 TCGGGTGCGCCGGTCGCCAACTTCACCGTCGCAAGCACCCCCCGGTACTTCGACAAGCAG 72426 |||||||| |||| ||||||||||| ||||| || ||||| |||||| ||| Sbjct 139 TCGGGTGCCGCGGTGGCCAACTTCACGGTCGCCTCGACTCCCCGCACGTTCGACCGTCAG 80 Query 72427 AGCAACGAGTGGAAGGACGCCGAGGCGCTCTTCCTGCGCTGCAACATCTGGCGCGAGCCG 72486 |||||||||||||||| |||| |||| ||| |||| ||| ||||||||||| || Sbjct 79 TCGAACGAGTGGAAGGACGGCGAGACGCTGTTCATGCGTTGCGCGATCTGGCGCGAAGCG 20 Query 72487 GCCGAGAACGTCGCCGAGT 72505 || |||||||||||||||| Sbjct 19 GCGGAGAACGTCGCCGAGT 1 >seq59665 Length=1686 Score = 170 bits (188), Expect = 1e-37 Identities = 302/434 (70%), Gaps = 10/434 (2%) Strand=Plus/Minus Query 57685 GCGACTGAGGGCTTCATCGACTTCCTTGACCGGAACCGACACGGATCGCCGTTCGAGCAC 57744 ||||| | |||| | ||| ||| ||| || |||| ||||| ||||||||||||||| Sbjct 1360 GCGACCGGGGGCCTGATCAACTACCTGATGCGCGACCGCCACGGGTCGCCGTTCGAGCAC 1301 Query 57745 TCCGTCTTCACCTTCCTGGTCGAGTGCCCCATATTCGTTTCGCGTGAGTTCATGCGCCAC 57804 | | |||||| || || || || ||||| | || ||||||||||| ||| Sbjct 1300 AACTCGATGACCTTCTACGTGCAGGCGCCGATCTTCGTGTTCCGCGAGTTCATGCGGCAC 1241 Query 57805 CGAATCGCCTCGTACAACGAGGAATCCGGTCGATACAAGGTCATGAAGGGCGTGTTCTAC 57864 || |||||||| ||||||||||| || || || ||| | || | |||||||||| Sbjct 1240 CGCATCGCCTCCTACAACGAGGAGTCGGGCCGCTACCGCGAGCTGCGGCCCGTGTTCTAC 1181 Query 57865 GTCCCGGCCGACGACCGGCCGCTGGTCCAGGTGGGCAAGCCGGGTGAGTATCGATTCGAG 57924 || ||| | |||||| ||||| ||||||||| || || | || ||| | Sbjct 1180 GTGCCGTCGCGGGACCGGAACCTGGTGCAGGTGGGCCGCCCCGGCGCCTA-CGAGTTCCT 1122 Query 57925 GCCGGGACGC-TCGAGCAGCACGAGCTGGT-GACAGACCTGTTC--CAGCTCGCCGCCGA 57980 |||||| || ||||||||||| |||||| ||| | | || | |||| ||| Sbjct 1121 GCCGGGCAGCGACGAGCAGCACGCGCTGGTCGACGGCGCCGTGCGGCAGCAGTCCG---- 1066 Query 57981 TACCGGC-TACAACCTCTACCAGACCATGCTCGACGCCGGCATTGCCCGGGAAGTTGCGC 58039 | |||| ||| | ||||| | | ||||||||||| ||| | || || || || |||| Sbjct 1065 TGGCGGCGTACGAGGCCTACCGGTCGATGCTCGACGCGGGCGTCGCTCGCGAGGTGGCGC 1006 Query 58040 GCGACGTCCTGCCGTTCCAGCTGTACACCTCGTTCTACGTCACCATGAACGCGCGCGGCC 58099 | ||| |||||| | | |||||| | || | ||||| || |||||||| || | | Sbjct 1005 GGATCGTGCTGCCGCTGAACCTGTACTCGTCCATGTACGTGACGATGAACGCCCGTGCGC 946 Query 58100 TGATGAACTTCCTC 58113 ||||||||||| || Sbjct 945 TGATGAACTTCGTC 932 >seq78026 Length=538 Score = 129 bits (142), Expect = 4e-25 Identities = 251/365 (69%), Gaps = 7/365 (2%) Strand=Plus/Plus Query 48366 TCGGTCGCGACGTCGAACTC--CGGCGT-ATCAATTGTCACCACAACTACACCGAGCGGG 48422 |||| ||||| ||||| | | || | ||||| || |||||||||||||||| || || Sbjct 26 TCGGCCGCGAGGTCGATCGCATCGAGGAGATCAACTGCCACCACAACTACACCGCGCAGG 85 Query 48423 TCGAGATCGCCGGCAAGAAAGTGTGGCTCACGCGCAAGGGTGCAATCGACGCAAGCGAGG 48482 || | |||||||| || |||||| | |||||||| || |||||||| |||| | Sbjct 86 AGAAGCACTTCGGCAAGACCGTCTGGCTCTCCCGCAAGGGGGCGATCGACGCGAGCGCCG 145 Query 48483 GTCGATATGGACTGATCCCCGGATCCATGGGCACCAAGTCCTATGTCGTCCGCGGCAAAG 48542 | || || ||||||||||| || ||||| | ||| || |||||| |||| | Sbjct 146 GCCGGCCCGGGCTGATCCCCGGGTCGATGGGAGCGGCGTCGTACGTCGTCGAGGGCAGGG 205 Query 48543 GGAATGAGTCCGGCCTCTTCTCTGC-GCCC-CATGGTGCCGGTCGTCAGTATTCGCGCAC 48600 | || | || | || | | || |||| || || || || || |||| ||||| | Sbjct 206 GCAACCCGGTCG--CGCTGCACAGCAGCCCGCACGGGGCGGGGCGCGAGTACTCGCGGTC 263 Query 48601 CCAGGCCAAGAAGCTGTTCACCCTGGATGACCTCGCCGACCGAATGAAGGGCATCGAATA 48660 | ||| |||| ||||||| || || |||| || || |||| |||||||| | Sbjct 264 CGCGGCGCGCAAGCGCTTCACCCGTGACGATCTCGACGCGCGCATGACCGGCATCGAGTG 323 Query 48661 CCGCCACGGCGAAGAGTGGATCGACGAGATCCCGGACGCCTACAAGGACATCGACCAGGT 48720 ||| || | || ||||||| ||| ||||| ||||||||||||||| ||| Sbjct 324 GGGCCGGTCGGACGCGTTCCTCGACGAACACCCCGACGCGTACAAGGACATCGACGTGGT 383 Query 48721 GATGG 48725 |||| Sbjct 384 CATGG 388 >seq37323 Length=3330 Score = 125 bits (138), Expect = 4e-24 Identities = 539/849 (63%), Gaps = 63/849 (7%) Strand=Plus/Minus Query 47950 GCTCGAGGCCATGGCCGAAGAGAAGGGCGTCGACCTCAAG-CATTCGCCGAAG--TGGCG 48006 ||| ||||| ||||||| ||| ||| |||||| | | | |||| | | ||||| Sbjct 1955 GCTGGAGGCGCTGGCCGACGAGGCCGGCTTCGACCCGGCGTCCTACGCCAAGGCGTGGCG 1896 Query 48007 GGAACAGCTGGGCTCGCTCGGCGGCGGCAACCACTTCATCGAGCTGTGCGAGTCCGTGCA 48066 | | |||||||||||||||||| |||||||||||||||||||| | ||||| | Sbjct 1895 GCAGCAGCTGGGCTCGCTCGGCAGCGGCAACCACTTCATCGAG------GTCTCCGTCGA 1842 Query 48067 CGAGCGTGGACCGGGCGCGATCTGGCTCTTCCTGCATTCCGGCAGCCGCGGTGTCGGCAA 48126 ||| |||| | ||| | ||||| |||||||| || |||||||| || || ||||| Sbjct 1841 CGA-----GACC-GATGCGGTGTGGCTGTTCCTGCACTCGGGCAGCCGGGGCGTGGGCAA 1788 Query 48127 CAAGATCGCGCAGAAGCANNNNNNNNNNNNNNNNNNNNNNNNNNNNAAGTGGCACATTCA 48186 | |||||| ||| |||| | | || || Sbjct 1787 CCGGATCGCCCAGCAGCACATCAAGGTCGCGCAGGCCGAGATGACGCGGCTGTGGATCCA 1728 Query 48187 ACTCGCCAACCCCGACCTCGCCTACCTGCCTTCCGGGACCGACG-AATTCGGCGACTACA 48245 || || ||| |||||| ||||||||| | ||| || || | |||| | ||||| Sbjct 1727 GCTGCCCGACCGCGACCTGGCCTACCTG-GTGGAGGGCACGCCGCAGTTCGACCGCTACA 1669 Query 48246 TTCGCGAGCTCCGGTGGGCACAGGCTTTCGCGCTCGAGAACCGGGCCGAAATGATGGACC 48305 | ||| || || ||||| ||| ||||| || |||||| | || |||||||||| Sbjct 1668 TCGCCGAACTGCGATGGGCGCAGCGCTTCGCCCTGCTGAACCGCGAGGAGATGATGGACC 1609 Query 48306 GTTTCGTCCATGTGTTCACCCGGTGGCTCGAGTACTCCGATGCCGTCGAATTCGACGAGC 48365 | |||| || | || ||| | |||| || || || || || | || Sbjct 1608 G---CGTC-----GTGCGCCAGGTCTC-CGAGCACCTCGGTG-CGGCG--------GTGC 1567 Query 48366 TCGGTCGCGACGTCGAACTCCGGCGTATCAATTGTCACCACAACTACACCGAGCGGGTCG 48425 | ||||| ||| ||||| || |||||||||| ||| ||| || Sbjct 1566 AGGAGCGCGA------------GCGGATCAACTGCCACCACAACTTCACGCAGCAGGAGC 1519 Query 48426 AGATCGCCGGCAAGAAAGTGTGGCTCACGCGCAAGGGTGCAATCGACGCAAGCGAGGGTC 48485 | | |||| | || ||||| | |||||||| || ||| | || | |||| | Sbjct 1518 GGCACTTCGGCCGTGACGTCTGGCTGTCCCGCAAGGGCGCCATCCAGGCGCGTCAGGG-C 1460 Query 48486 GATAT-GGACTGATCCCCGGATCCATGGGCACCAAGTCCTATGTCGT------CCGCGGC 48538 || | || ||||||||||| || ||||| ||| ||||| || || |||||| Sbjct 1459 GACCTCGGCCTGATCCCCGGGTCGATGGGGACCGCCTCCTACGTGGTGGAGGGGCGCGGC 1400 Query 48539 AAAGGGAATGAGTCCGGCCTCTTCTCTGCGCCCCATGGTGCCGGTCGTCAGTATTCGCGC 48598 | || ||| | ||| ||| |||| || || ||||| || | ||||| Sbjct 1399 GACCGG-ATG-----GCGCTCGACTCGTCGCCGCACGGCGCCGGGCGCGTGCTGTCGCGG 1346 Query 48599 ACCCAGGCCAAGAAGCTGTTCACCCTGGATGACCTCGCCGACCGAATGAAGGGCATCGAA 48658 | |||| |||| |||||| | || | || ||| |||| ||||||||| Sbjct 1345 TCGAAGGCGCGGAAGGCGTTCACGATCGAGCAGCTGCGCGAGGCGATGACGGGCATCGAG 1286 Query 48659 TACCGCCACGGCGAAGAGTGGATCGACGAGATCCCGGACGCCTACAAGGACATCGACCAG 48718 | ||| || ||| | | | |||||||||||| | ||||||||| ||||||||| Sbjct 1285 TTCCGGGACACCGAGGCCTTCCTGGACGAGATCCCGCAGGCCTACAAGCCGATCGACCAG 1226 Query 48719 GTGATGGAAGATGCCAAAGACCTGGTCGAAGTCGAGGCA-GTGCTGTCCCAGCTCATGAA 48777 ||||||| || || ||||||||| || | |||| ||| |||||| | || Sbjct 1225 GTGATGGCCGACGCGGCCGACCTGGTCACCGT-GCGGCACACCCTGCGCCAGCTGGTCAA 1167 Query 48778 CGTGAAAGG 48786 |||||| || Sbjct 1166 CGTGAAGGG 1158 Score = 109 bits (120), Expect = 3e-19 Identities = 107/138 (78%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 47664 TGCCGTTCATCCATCCTCACGTCGCCCTCATGCCGGATGCACACGGCGGCAAAGGATCTG 47723 |||| |||||||| || ||| | ||||| ||||| || || ||| || || | Sbjct 2616 TGCCCTTCATCCACCCGCACCTGGCCCTGATGCCCGACGCGCACCTGGGGCTCGGCGCCA 2557 Query 47724 CCGTCGGCACGGTGATTCCCACGGTGGACGCCGTGATCCCGGCCGCGGTCGGCGTGGACA 47783 | |||||| ||||||| || ||| | | ||||||||| ||||||||||| || ||||||| Sbjct 2556 CGGTCGGCTCGGTGATCCCGACGCTCGGCGCCGTGATGCCGGCCGCGGTGGGGGTGGACA 2497 Query 47784 TCGGCTGCGGCATGATCG 47801 |||||||||| ||||||| Sbjct 2496 TCGGCTGCGGGATGATCG 2479 >seq82131 Length=972 Score = 93.3 bits (102), Expect = 3e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 43276 GTGGACGTCATCATCCTGGCCCGCGGCGGCGGCTCGAAGGAAGACCTCCTCCCGTGGTCC 43335 || || || ||| || | || ||||||||||| ||| ||| ||||| || || | ||| Sbjct 156 GTCGAGGTGATCGTCATCGCGCGCGGCGGCGGTTCGCTGGAGGACCTGCTGCCCTTCTCC 215 Query 43336 GACGAGGCTCTGGTTCGCGCCGCGTTCGCGTCTGCAACCCCGGTTGTGTCTGCGATTGGC 43395 ||||||| || || ||||| | |||| | || ||||| || || || ||| Sbjct 216 GACGAGGGGCTCGTCCGCGCGGTCGCCGCGGCGCGCACGCCGGTGGTCAGCGCCATCGGC 275 Query 43396 CACGAGAATGATCGGCCGCTCCTCGACCGCGTTGTGGACCTTCGAGCGGCAACTCCGACG 43455 ||||||| || ||| ||||||||| ||| | ||| | || || | || ||||| Sbjct 276 CACGAGAGCGACAACCCGATCCTCGACCTCGTCGCCGACGTGCGCGCCTCGACGCCGACC 335 Query 43456 GATGCAGCGAAACGTGTCGTACCCGACGT 43484 || || || || || ||||| |||||||| Sbjct 336 GACGCGGCCAAGCGGGTCGTGCCCGACGT 364 >seq109048 Length=609 Score = 91.5 bits (100), Expect = 9e-14 Identities = 83/105 (79%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 72537 GGGACGCCTCAAGCAGCGCAGCTACGAGACGAAGGAAGGCGAGAACCGGACGGTCATCGA 72596 ||| || |||||||||||| | |||||| || |||||||| || || |||||||| Sbjct 609 GGGGCGGCTCAAGCAGCGCTCGTTCGAGACCCGTGAGGGCGAGAAGCGCACCGTCATCGA 550 Query 72597 GCTCGAGGTCGAGGAGATCGGCCCCGCGCTGCGGTACGCCACCGC 72641 |||||| ||||||||| ||||||| ||||| |||||| || || Sbjct 549 GCTCGACGTCGAGGAGGTCGGCCCGTCGCTGAAGTACGCGACGGC 505 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 299684083880316