Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Castanea_20mollissima_20[genbank_20GCA_5F000763605.1_202014-10-06]
133,589 sequences; 833,240,550 total letters
Query= NC_030936.1
Length=93843
Score E
Sequences producing significant alignments: (Bits) Value
seq115307 174 9e-39
seq59665 170 1e-37
seq78026 129 4e-25
seq37323 125 4e-24
seq82131 93.3 3e-14
seq109048 91.5 9e-14
>seq115307
Length=544
Score = 174 bits (192), Expect = 9e-39
Identities = 158/199 (79%), Gaps = 0/199 (0%)
Strand=Plus/Minus
Query 72307 GACACCGTGATCACCGTGATCGGAAACCTGACCGCCGATCCCGAACTGCGCTTCACCCCC 72366
|| ||||| ||||| ||||||| ||||| || ||| ||||||||||||||||||||
Sbjct 199 GAAACCGTCATCACGCTGATCGGGAACCTCACGAACGACCCCGAACTGCGCTTCACCCCG 140
Query 72367 TCGGGTGCGCCGGTCGCCAACTTCACCGTCGCAAGCACCCCCCGGTACTTCGACAAGCAG 72426
|||||||| |||| ||||||||||| ||||| || ||||| |||||| |||
Sbjct 139 TCGGGTGCCGCGGTGGCCAACTTCACGGTCGCCTCGACTCCCCGCACGTTCGACCGTCAG 80
Query 72427 AGCAACGAGTGGAAGGACGCCGAGGCGCTCTTCCTGCGCTGCAACATCTGGCGCGAGCCG 72486
|||||||||||||||| |||| |||| ||| |||| ||| ||||||||||| ||
Sbjct 79 TCGAACGAGTGGAAGGACGGCGAGACGCTGTTCATGCGTTGCGCGATCTGGCGCGAAGCG 20
Query 72487 GCCGAGAACGTCGCCGAGT 72505
|| ||||||||||||||||
Sbjct 19 GCGGAGAACGTCGCCGAGT 1
>seq59665
Length=1686
Score = 170 bits (188), Expect = 1e-37
Identities = 302/434 (70%), Gaps = 10/434 (2%)
Strand=Plus/Minus
Query 57685 GCGACTGAGGGCTTCATCGACTTCCTTGACCGGAACCGACACGGATCGCCGTTCGAGCAC 57744
||||| | |||| | ||| ||| ||| || |||| ||||| |||||||||||||||
Sbjct 1360 GCGACCGGGGGCCTGATCAACTACCTGATGCGCGACCGCCACGGGTCGCCGTTCGAGCAC 1301
Query 57745 TCCGTCTTCACCTTCCTGGTCGAGTGCCCCATATTCGTTTCGCGTGAGTTCATGCGCCAC 57804
| | |||||| || || || || ||||| | || ||||||||||| |||
Sbjct 1300 AACTCGATGACCTTCTACGTGCAGGCGCCGATCTTCGTGTTCCGCGAGTTCATGCGGCAC 1241
Query 57805 CGAATCGCCTCGTACAACGAGGAATCCGGTCGATACAAGGTCATGAAGGGCGTGTTCTAC 57864
|| |||||||| ||||||||||| || || || ||| | || | ||||||||||
Sbjct 1240 CGCATCGCCTCCTACAACGAGGAGTCGGGCCGCTACCGCGAGCTGCGGCCCGTGTTCTAC 1181
Query 57865 GTCCCGGCCGACGACCGGCCGCTGGTCCAGGTGGGCAAGCCGGGTGAGTATCGATTCGAG 57924
|| ||| | |||||| ||||| ||||||||| || || | || ||| |
Sbjct 1180 GTGCCGTCGCGGGACCGGAACCTGGTGCAGGTGGGCCGCCCCGGCGCCTA-CGAGTTCCT 1122
Query 57925 GCCGGGACGC-TCGAGCAGCACGAGCTGGT-GACAGACCTGTTC--CAGCTCGCCGCCGA 57980
|||||| || ||||||||||| |||||| ||| | | || | |||| |||
Sbjct 1121 GCCGGGCAGCGACGAGCAGCACGCGCTGGTCGACGGCGCCGTGCGGCAGCAGTCCG---- 1066
Query 57981 TACCGGC-TACAACCTCTACCAGACCATGCTCGACGCCGGCATTGCCCGGGAAGTTGCGC 58039
| |||| ||| | ||||| | | ||||||||||| ||| | || || || || ||||
Sbjct 1065 TGGCGGCGTACGAGGCCTACCGGTCGATGCTCGACGCGGGCGTCGCTCGCGAGGTGGCGC 1006
Query 58040 GCGACGTCCTGCCGTTCCAGCTGTACACCTCGTTCTACGTCACCATGAACGCGCGCGGCC 58099
| ||| |||||| | | |||||| | || | ||||| || |||||||| || | |
Sbjct 1005 GGATCGTGCTGCCGCTGAACCTGTACTCGTCCATGTACGTGACGATGAACGCCCGTGCGC 946
Query 58100 TGATGAACTTCCTC 58113
||||||||||| ||
Sbjct 945 TGATGAACTTCGTC 932
>seq78026
Length=538
Score = 129 bits (142), Expect = 4e-25
Identities = 251/365 (69%), Gaps = 7/365 (2%)
Strand=Plus/Plus
Query 48366 TCGGTCGCGACGTCGAACTC--CGGCGT-ATCAATTGTCACCACAACTACACCGAGCGGG 48422
|||| ||||| ||||| | | || | ||||| || |||||||||||||||| || ||
Sbjct 26 TCGGCCGCGAGGTCGATCGCATCGAGGAGATCAACTGCCACCACAACTACACCGCGCAGG 85
Query 48423 TCGAGATCGCCGGCAAGAAAGTGTGGCTCACGCGCAAGGGTGCAATCGACGCAAGCGAGG 48482
|| | |||||||| || |||||| | |||||||| || |||||||| |||| |
Sbjct 86 AGAAGCACTTCGGCAAGACCGTCTGGCTCTCCCGCAAGGGGGCGATCGACGCGAGCGCCG 145
Query 48483 GTCGATATGGACTGATCCCCGGATCCATGGGCACCAAGTCCTATGTCGTCCGCGGCAAAG 48542
| || || ||||||||||| || ||||| | ||| || |||||| |||| |
Sbjct 146 GCCGGCCCGGGCTGATCCCCGGGTCGATGGGAGCGGCGTCGTACGTCGTCGAGGGCAGGG 205
Query 48543 GGAATGAGTCCGGCCTCTTCTCTGC-GCCC-CATGGTGCCGGTCGTCAGTATTCGCGCAC 48600
| || | || | || | | || |||| || || || || || |||| ||||| |
Sbjct 206 GCAACCCGGTCG--CGCTGCACAGCAGCCCGCACGGGGCGGGGCGCGAGTACTCGCGGTC 263
Query 48601 CCAGGCCAAGAAGCTGTTCACCCTGGATGACCTCGCCGACCGAATGAAGGGCATCGAATA 48660
| ||| |||| ||||||| || || |||| || || |||| |||||||| |
Sbjct 264 CGCGGCGCGCAAGCGCTTCACCCGTGACGATCTCGACGCGCGCATGACCGGCATCGAGTG 323
Query 48661 CCGCCACGGCGAAGAGTGGATCGACGAGATCCCGGACGCCTACAAGGACATCGACCAGGT 48720
||| || | || ||||||| ||| ||||| ||||||||||||||| |||
Sbjct 324 GGGCCGGTCGGACGCGTTCCTCGACGAACACCCCGACGCGTACAAGGACATCGACGTGGT 383
Query 48721 GATGG 48725
||||
Sbjct 384 CATGG 388
>seq37323
Length=3330
Score = 125 bits (138), Expect = 4e-24
Identities = 539/849 (63%), Gaps = 63/849 (7%)
Strand=Plus/Minus
Query 47950 GCTCGAGGCCATGGCCGAAGAGAAGGGCGTCGACCTCAAG-CATTCGCCGAAG--TGGCG 48006
||| ||||| ||||||| ||| ||| |||||| | | | |||| | | |||||
Sbjct 1955 GCTGGAGGCGCTGGCCGACGAGGCCGGCTTCGACCCGGCGTCCTACGCCAAGGCGTGGCG 1896
Query 48007 GGAACAGCTGGGCTCGCTCGGCGGCGGCAACCACTTCATCGAGCTGTGCGAGTCCGTGCA 48066
| | |||||||||||||||||| |||||||||||||||||||| | ||||| |
Sbjct 1895 GCAGCAGCTGGGCTCGCTCGGCAGCGGCAACCACTTCATCGAG------GTCTCCGTCGA 1842
Query 48067 CGAGCGTGGACCGGGCGCGATCTGGCTCTTCCTGCATTCCGGCAGCCGCGGTGTCGGCAA 48126
||| |||| | ||| | ||||| |||||||| || |||||||| || || |||||
Sbjct 1841 CGA-----GACC-GATGCGGTGTGGCTGTTCCTGCACTCGGGCAGCCGGGGCGTGGGCAA 1788
Query 48127 CAAGATCGCGCAGAAGCANNNNNNNNNNNNNNNNNNNNNNNNNNNNAAGTGGCACATTCA 48186
| |||||| ||| |||| | | || ||
Sbjct 1787 CCGGATCGCCCAGCAGCACATCAAGGTCGCGCAGGCCGAGATGACGCGGCTGTGGATCCA 1728
Query 48187 ACTCGCCAACCCCGACCTCGCCTACCTGCCTTCCGGGACCGACG-AATTCGGCGACTACA 48245
|| || ||| |||||| ||||||||| | ||| || || | |||| | |||||
Sbjct 1727 GCTGCCCGACCGCGACCTGGCCTACCTG-GTGGAGGGCACGCCGCAGTTCGACCGCTACA 1669
Query 48246 TTCGCGAGCTCCGGTGGGCACAGGCTTTCGCGCTCGAGAACCGGGCCGAAATGATGGACC 48305
| ||| || || ||||| ||| ||||| || |||||| | || ||||||||||
Sbjct 1668 TCGCCGAACTGCGATGGGCGCAGCGCTTCGCCCTGCTGAACCGCGAGGAGATGATGGACC 1609
Query 48306 GTTTCGTCCATGTGTTCACCCGGTGGCTCGAGTACTCCGATGCCGTCGAATTCGACGAGC 48365
| |||| || | || ||| | |||| || || || || || | ||
Sbjct 1608 G---CGTC-----GTGCGCCAGGTCTC-CGAGCACCTCGGTG-CGGCG--------GTGC 1567
Query 48366 TCGGTCGCGACGTCGAACTCCGGCGTATCAATTGTCACCACAACTACACCGAGCGGGTCG 48425
| ||||| ||| ||||| || |||||||||| ||| ||| ||
Sbjct 1566 AGGAGCGCGA------------GCGGATCAACTGCCACCACAACTTCACGCAGCAGGAGC 1519
Query 48426 AGATCGCCGGCAAGAAAGTGTGGCTCACGCGCAAGGGTGCAATCGACGCAAGCGAGGGTC 48485
| | |||| | || ||||| | |||||||| || ||| | || | |||| |
Sbjct 1518 GGCACTTCGGCCGTGACGTCTGGCTGTCCCGCAAGGGCGCCATCCAGGCGCGTCAGGG-C 1460
Query 48486 GATAT-GGACTGATCCCCGGATCCATGGGCACCAAGTCCTATGTCGT------CCGCGGC 48538
|| | || ||||||||||| || ||||| ||| ||||| || || ||||||
Sbjct 1459 GACCTCGGCCTGATCCCCGGGTCGATGGGGACCGCCTCCTACGTGGTGGAGGGGCGCGGC 1400
Query 48539 AAAGGGAATGAGTCCGGCCTCTTCTCTGCGCCCCATGGTGCCGGTCGTCAGTATTCGCGC 48598
| || ||| | ||| ||| |||| || || ||||| || | |||||
Sbjct 1399 GACCGG-ATG-----GCGCTCGACTCGTCGCCGCACGGCGCCGGGCGCGTGCTGTCGCGG 1346
Query 48599 ACCCAGGCCAAGAAGCTGTTCACCCTGGATGACCTCGCCGACCGAATGAAGGGCATCGAA 48658
| |||| |||| |||||| | || | || ||| |||| |||||||||
Sbjct 1345 TCGAAGGCGCGGAAGGCGTTCACGATCGAGCAGCTGCGCGAGGCGATGACGGGCATCGAG 1286
Query 48659 TACCGCCACGGCGAAGAGTGGATCGACGAGATCCCGGACGCCTACAAGGACATCGACCAG 48718
| ||| || ||| | | | |||||||||||| | ||||||||| |||||||||
Sbjct 1285 TTCCGGGACACCGAGGCCTTCCTGGACGAGATCCCGCAGGCCTACAAGCCGATCGACCAG 1226
Query 48719 GTGATGGAAGATGCCAAAGACCTGGTCGAAGTCGAGGCA-GTGCTGTCCCAGCTCATGAA 48777
||||||| || || ||||||||| || | |||| ||| |||||| | ||
Sbjct 1225 GTGATGGCCGACGCGGCCGACCTGGTCACCGT-GCGGCACACCCTGCGCCAGCTGGTCAA 1167
Query 48778 CGTGAAAGG 48786
|||||| ||
Sbjct 1166 CGTGAAGGG 1158
Score = 109 bits (120), Expect = 3e-19
Identities = 107/138 (78%), Gaps = 0/138 (0%)
Strand=Plus/Minus
Query 47664 TGCCGTTCATCCATCCTCACGTCGCCCTCATGCCGGATGCACACGGCGGCAAAGGATCTG 47723
|||| |||||||| || ||| | ||||| ||||| || || ||| || || |
Sbjct 2616 TGCCCTTCATCCACCCGCACCTGGCCCTGATGCCCGACGCGCACCTGGGGCTCGGCGCCA 2557
Query 47724 CCGTCGGCACGGTGATTCCCACGGTGGACGCCGTGATCCCGGCCGCGGTCGGCGTGGACA 47783
| |||||| ||||||| || ||| | | ||||||||| ||||||||||| || |||||||
Sbjct 2556 CGGTCGGCTCGGTGATCCCGACGCTCGGCGCCGTGATGCCGGCCGCGGTGGGGGTGGACA 2497
Query 47784 TCGGCTGCGGCATGATCG 47801
|||||||||| |||||||
Sbjct 2496 TCGGCTGCGGGATGATCG 2479
>seq82131
Length=972
Score = 93.3 bits (102), Expect = 3e-14
Identities = 146/209 (70%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 43276 GTGGACGTCATCATCCTGGCCCGCGGCGGCGGCTCGAAGGAAGACCTCCTCCCGTGGTCC 43335
|| || || ||| || | || ||||||||||| ||| ||| ||||| || || | |||
Sbjct 156 GTCGAGGTGATCGTCATCGCGCGCGGCGGCGGTTCGCTGGAGGACCTGCTGCCCTTCTCC 215
Query 43336 GACGAGGCTCTGGTTCGCGCCGCGTTCGCGTCTGCAACCCCGGTTGTGTCTGCGATTGGC 43395
||||||| || || ||||| | |||| | || ||||| || || || |||
Sbjct 216 GACGAGGGGCTCGTCCGCGCGGTCGCCGCGGCGCGCACGCCGGTGGTCAGCGCCATCGGC 275
Query 43396 CACGAGAATGATCGGCCGCTCCTCGACCGCGTTGTGGACCTTCGAGCGGCAACTCCGACG 43455
||||||| || ||| ||||||||| ||| | ||| | || || | || |||||
Sbjct 276 CACGAGAGCGACAACCCGATCCTCGACCTCGTCGCCGACGTGCGCGCCTCGACGCCGACC 335
Query 43456 GATGCAGCGAAACGTGTCGTACCCGACGT 43484
|| || || || || ||||| ||||||||
Sbjct 336 GACGCGGCCAAGCGGGTCGTGCCCGACGT 364
>seq109048
Length=609
Score = 91.5 bits (100), Expect = 9e-14
Identities = 83/105 (79%), Gaps = 0/105 (0%)
Strand=Plus/Minus
Query 72537 GGGACGCCTCAAGCAGCGCAGCTACGAGACGAAGGAAGGCGAGAACCGGACGGTCATCGA 72596
||| || |||||||||||| | |||||| || |||||||| || || ||||||||
Sbjct 609 GGGGCGGCTCAAGCAGCGCTCGTTCGAGACCCGTGAGGGCGAGAAGCGCACCGTCATCGA 550
Query 72597 GCTCGAGGTCGAGGAGATCGGCCCCGCGCTGCGGTACGCCACCGC 72641
|||||| ||||||||| ||||||| ||||| |||||| || ||
Sbjct 549 GCTCGACGTCGAGGAGGTCGGCCCGTCGCTGAAGTACGCGACGGC 505
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 299684083880316
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