Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Castanea_20mollissima_20[genbank_20GCA_5F000763605.1_202014-10-06] 133,589 sequences; 833,240,550 total letters Query= NC_030943.1 Length=54990 Score E Sequences producing significant alignments: (Bits) Value seq83807 235 2e-57 seq60277 87.8 6e-13 seq92062 86.0 2e-12 >seq83807 Length=947 Score = 235 bits (260), Expect = 2e-57 Identities = 374/528 (71%), Gaps = 9/528 (2%) Strand=Plus/Minus Query 52887 ACTCGACGGGTGGGACGTGTCCGATCTCGCCGTGCAGGCGGCGGTGGTTGAACCATTCGA 52946 ||||||| || |||| || | ||| |||||||| || ||| |||| |||| |||| Sbjct 547 ACTCGACCGGCGGGATCATCCCCAGCTCCCCGTGCAGTCGTCGGGTGTTGTACCAATCGA 488 Query 52947 CGTACTCAGCGACGGCGATCTCGACCTCGCCCACACCTGCCCAG---CCGCCTCGCGGGC 53003 |||| | ||||| | |||||| ||| ||| || ||| ||| | ||| Sbjct 487 CGTAGCCCGCGACACCACGCTCGACGTCGTCCAGGCCGCGCCACGGACCGTCACGCCCCG 428 Query 53004 GCATCACGGGGTTACGGATGCATTCGGCTTTGAACAGCGAGTTGAACGCCTCAGCCATCG 53063 | | |||||| |||||||| ||||| ||||||| |||||||||||||| ||||||| Sbjct 427 GTAGGT-GGGGTTGCGGATGCACTCGGCCTTGAACAAGGAGTTGAACGCCTCGGCCATCG 369 Query 53064 CGTTGTCGTATGAATCCCCTTTGGAGCCAACAGATGTCACCGCTTCGGCTTCGGCCAGTC 53123 |||||||||| || || || |||| || || || | ||||| | | || || | Sbjct 368 CGTTGTCGTAGGAGTCGCCGGTGGAACCGACCGAAGCGACCGCACCCTCAAGCGCTAGAC 309 Query 53124 GTTCGGTGTAGCGGATGGCTCGGTATTGCACTCCGCGGTCGGAGTGGTGGATCAGCCCGG 53183 ||||||||||| | || |||||| ||||| || ||||| || ||| |||| Sbjct 308 TCTCGGTGTAGCGCAGCGCAACGTATTGAACTCCTTTATCCGAGTGATGCTTCAATCCGG 249 Query 53184 CCACGTCGTGGCCGGCACG-CGACCGTGCCCACAATCCCATGTTCAGGGCGTCGAGGGCG 53242 || ||| ||| | || |||| | || |||| |||| | ||| || || ||||| Sbjct 248 TCA-GTCCGCGCCTTCGCGACGACGGATCC-ACAACGCCATCTGCAGCGCCTCCAGGGCC 191 Query 53243 AGGTCGGTGTGCATGGTGGTC-GAGACCTGCCAGCCGACGACCATCCGCGAGAACACGTC 53301 || |||||| ||| ||||||| | |||||||||||| |||| || | | | ||||| Sbjct 190 AGTTCGGTGCGCA-GGTGGTCAGCGACCTGCCAGCCCACGATGCGGCGGGTGCAGACGTC 132 Query 53302 CAGGACGAACGCCGCGTACACCCAGCCCGAGTGGGTGCGGATGTAGGTCAGGTCCGCCAC 53361 |||||||||| |||||||||||||||||| ||||||||||||||| | || ||||| Sbjct 131 TTGGACGAACGCGGCGTACACCCAGCCCGAGCAGGTGCGGATGTAGGTGATATCGGCCAC 72 Query 53362 CCACAACGCGTTCGGTGCCGCCGCGGTGAACTGACGGTTGACCCGGTC 53409 ||| | || |||| | | ||| |||| | || | |||| |||| Sbjct 71 CCAGAGTCGGTCCGGTCGCTCGGCGCTGAAGTTGCGTTCGACCAGGTC 24 >seq60277 Length=808 Score = 87.8 bits (96), Expect = 6e-13 Identities = 248/378 (66%), Gaps = 6/378 (2%) Strand=Plus/Plus Query 53026 TTCGGCTTTGAACAGCGAGTTGAACGCCTCAGCCATCGCGTTGTCGTATGAATCCCCTTT 53085 |||||| ||| | || ||||| || ||| |||| ||||||||||| || || Sbjct 95 TTCGGCCTTGTAAAGGCCGTTGATCGTCTCGGCCAAAGCGTTGTCGTAGCTGTCGCCGAC 154 Query 53086 GGAGCCAACAGATGTCACCGCTTCGGCTTCGGCCAGTCGTTCGGTGTAGCGGATGGCTCG 53145 | |||||| |||| | | |||||||||| || || |||||||| ||||| Sbjct 155 GCTGCCAACCGATGGCTCTATCCCGGCTTCGGCGAGGCGCTCGGTGTACTTGATGGACAC 214 Query 53146 GTATTGCACTCCGCGGTCGGAGTGGTGGATCAGCCCGGCCACGTCGTGGCCGGCACGCGA 53205 ||||||| || |||||| ||| || || || || ||| || | |||||| |||| Sbjct 215 GTATTGCGACCCCCGGTCGCTGTGATGAATGAGACC-GCCCCGATG-AGCCGGCCGGCGA 272 Query 53206 CCGTGCCCACAATCCCATGTTCAGGGCGTCGAGGGCGAGGTCGGTGTGCATGGTGGTCGA 53265 | || | || | |||||| |||||| ||| | || ||| || | Sbjct 273 TCATG----GAGAGCCTGCTCCAGGGCATCGAGGACGAAGCTGGCATGCGCCGTTCTGCT 328 Query 53266 GACCTGCCAGCCGACGACCATCCGCGAGAACACGTCCAGGACGAACGCCGCGTACACCCA 53325 | || |||| || |||| | || | | | ||| | |||||| ||| |||| || | Sbjct 329 GGCCCGCCACCCCACGATCCGCCTGGCGTAGGTGTCTATGACGAAGGCCACGTAGACGAA 388 Query 53326 GCCCGAGTGGGTGCGGATGTAGGTCAGGTCCGCCACCCACAACGCGTTCGGTGCCGCCGC 53385 ||||| ||| || |||||| | |||| |||||||| | |||||| || | ||| Sbjct 389 GCCCGCCCAGGTCGCGACGTAGGTGAAATCCGACACCCACAGCATGTTCGGCGCTGGCGC 448 Query 53386 GGTGAACTGACGGTTGAC 53403 | |||| |||||||| Sbjct 449 GTAGAACCTGCGGTTGAC 466 >seq92062 Length=823 Score = 86.0 bits (94), Expect = 2e-12 Identities = 398/612 (65%), Gaps = 46/612 (8%) Strand=Plus/Plus Query 53341 GATGTAGGTCAGGTCCGCCACCCACAACGCGTTCGGTGCCGCCGCGGTGAACTGACGGTT 53400 || |||||| | ||||| |||||||| | |||||| |||| ||| |||||| ||||| Sbjct 25 GACGTAGGTGAAGTCCGACACCCACAGCATGTTCGGCGCCGGCGCCCGGAACTGCCGGTT 84 Query 53401 GACCCGGTCAGCCGGCCGGGGTGTTTCAGCTCCCTCGCTGCGCGTGGTCTTGCG---TGT 53457 ||||||||| ||| | |||| | | || |||||| ||||| ||| || Sbjct 85 GACCCGGTCGAGCGGGCATGGTGCTGC--CTTG-TCGCTGACGGTGGT---GCGCACTGG 138 Query 53458 CTTGAGTCTCGCTATCCCTTGCAG-CCCATCGGCTTTCATCAATCGCTCGACGGTGCAGC 53516 |||| | | || ||||| ||||| | | ||||| || ||||| ||||||| Sbjct 139 CTTGCCGCGAATGACACCCTGCAGGCCCAT-GTCGCGCATCAGCCGTTCGACTGTGCAGC 197 Query 53517 GGGCAGCACTATGGCCCTGTCTGCGCAATTG--GGCATGCACCTTGCGGGCACCGTAGAC 53574 ||||| | | ||||| | | || || | || ||||||||| | |||||||| Sbjct 198 GGGCAACCGCAAAGCCCTCGCGCCTCATCTGCCGCCA--CACCTTGCGCACGCCGTAGAC 255 Query 53575 GCCGAGGTTGTCGGCATGCACCGCGCGGACCTGGGTAAGGAGCTCCCGGTCACGCACCAC 53634 || || ||| || || ||| ||| |||| | ||||| | || ||| | Sbjct 256 GCGGAAGTTCTCTTCAAACACGCGGCGCACCTCCGGCCGGAGCGCAGCATCGCGCCGAGC 315 Query 53635 ACGAGGCGCCTCGGTCTTCTGGG-GGCTCAGG----TGGGCT-CGTAC-CGTGGACGGAG 53687 |||| || | | ||||| |||||| ||||| ||| | ||| | || Sbjct 316 CCGAGCCGAC-----CGTCTGGTCGGCTCAACCTTCTGGGCAACGTGCTCGT--AATAAG 368 Query 53688 -CGATCTGGGCGGACGTATCGCGCAATGCCGCACAGATCGGATCGACTCCGTGTTCATCG 53746 ||| | ||||| |||| ||| || | |||||| ||||| |||| | ||| Sbjct 369 TCGA-CGGGGCG-----ATCG-GCAGAACCCTGCTGATCGGCTCGACCCCGTAAACCTCG 421 Query 53747 CGGTGAGCCGCGACGAACTCCACGATCAGCGCT---GTGGGCGGTCGATCTCCGC---CG 53800 || || | ||| ||| | ||||| |||| |||||||||||| |||||| || Sbjct 422 CGATGCACGTCGATGAAGGC---GATCATCGCTTCAGTGGGCGGTCGAGCTCCGCCATCG 478 Query 53801 CAAAGAAAGCCGAAGCCTGCTTCAAGATCGTGTTCGCTCGCCGCAGTTCACGGTTCTCCC 53860 |||| | || |||| || |||| ||| || | ||||| || |||||||| | Sbjct 479 CAAAATACGCGCTCGCCTTGCGCAGGATCTCGTTGGCCTGGCGCAGCTCGCGGTTCTCGC 538 Query 53861 GCTCCAACGCCGCGATGCGGTCAGCGTCCTCACTCGTGGTGCCCGGGCGGACCCCGCCGT 53920 | || | |||| || ||||||||| | || |||| ||| | ||| |||| || Sbjct 539 GTTCGAGCGCCTTCATCCGGTCAGCGACATCGCTCGGCACGCCGGCGCGCGAACCGCTGT 598 Query 53921 CGATCTCGGCCT 53932 ||| |||||||| Sbjct 599 CGACCTCGGCCT 610 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 175567442656336