Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Castanea_20mollissima_20[genbank_20GCA_5F000763605.1_202014-10-06]
133,589 sequences; 833,240,550 total letters
Query= NC_031004.1
Length=41857
Score E
Sequences producing significant alignments: (Bits) Value
seq35922 414 3e-111
seq40050 156 1e-33
seq101490 129 2e-25
>seq35922
Length=2553
Score = 414 bits (458), Expect = 3e-111
Identities = 609/869 (70%), Gaps = 18/869 (2%)
Strand=Plus/Plus
Query 7436 ATGGCTGTCACTCTCGCCCAGGCGGCGGTGCTCTCG---ACCGATCAGCACTCGCGAGGC 7492
||||| ||||| ||| |||||| |||| ||| ||| | ||| | ||| | | |
Sbjct 1670 ATGGCAGTCACCCTCATCCAGGCCGCGGCGCTGTCGGACAACGACCTGCAGACCGGCGTG 1729
Query 7493 ATTCACGAGATCTTCGTGCAGGAGTCGCCGGTCCTCGACCGGCTGCCTCTGATGGAGATC 7552
|| ||||| ||| | |||| ||| || || |||||||| || | | ||||||
Sbjct 1730 AT---CGAGACGTTCATCCAGGCGTCTCCCGTGCTCGACCGCGCCCCGATCCTCGAGATC 1786
Query 7553 GCGGGCAATGCCTACGCATACGACCTCGAGGCCACGCTGCCCGGCGTCGCGTTCCGCGGC 7612
|||||| || ||||| ||| || ||||| || || |||||||||||||||||||||
Sbjct 1787 CAGGGCAACGCGTACGCGTACAACACGGAGGCGACCCTCCCCGGCGTCGCGTTCCGCGGC 1846
Query 7613 GTGAACGAGGCATACGTCGAGTCGACGGGCACGTTCAACCAGCTGACCGAGCGACTGGTC 7672
||||||||||| ||| ||||| ||||||||| ||||||||||||||||| || ||
Sbjct 1847 GTGAACGAGGCGTACATCGAGAGCACGGGCACGGTCAACCAGCTGACCGAGTCGCTCGTG 1906
Query 7673 ATCCTCGGTGGCGACGCCGATGTCGATCGGTTCATTCAGCAGACCCGATCGGACCGCTAC 7732
||||| |||||||||||||| ||||| |||||||| |||||| || | ||| ||
Sbjct 1907 ATCCTGGGTGGCGACGCCGACGTCGACCGGTTCATCGTGCAGACGCGCGGGAACCTGAAC 1966
Query 7733 AGCCAGCGCGCCGAGCAGGACAAGCTGAAGGTCAAGGCCATCAGCTACAAGTTCAACGAT 7792
||||||||| |||| |||||||| |||||| |||||||||| | ||
Sbjct 1967 GACCAGCGCGCGACGCAGACGGCCCTGAAGGTGAAGGCCGCGTCCTACAAGTTCCAGGAC 2026
Query 7793 CACTTTTTCAACGGCGACACCGCCGTGGACACAAAGGGATTCGACGGACTGAAGAAGCGT 7852
||| |||||||||||| |||| || | ||||| |||||||| |||||||||||
Sbjct 2027 TCCTTCTTCAACGGCGACGTGACCGTCGAGCCGAAGGGCTTCGACGGCCTGAAGAAGCGC 2086
Query 7853 CTCGTCGGCAACCAGGTCATCGACGCCGGCACCAACGGCATCCCGATCGTCGGNNNNNNN 7912
||||||||| |||||||||||||||||||| ||||| ||||| |||||||
Sbjct 2087 CTCGTCGGCGGGCAGGTCATCGACGCCGGCACGAACGGGATCCCCGTCGTCGGCAACGGT 2146
Query 7913 NNNNNNNNNNNNNNNNNNNNNTTCGACAAGCTCGACGAGCTCCTCGC-CGCGTGCCC--- 7968
|||||| ||||||||||||||||||| || ||||||
Sbjct 2147 GGCAGCGACTCCTTCGCGCTCTTCGACCAGCTCGACGAGCTCCTCGCGCGGGTGCCCGGC 2206
Query 7969 --GAACGC------TGACGCCATGTACGCCAACCGTCAGGTTCGCGCCAAGACTCTGTCC 8020
| |||| | || || ||||| ||||| | | || |||| | ||
Sbjct 2207 CTGGACGCCTCGAACGGTGCGATCTACGCGAACCGGTCGATCATCGGGAAGATCCGCTCG 2266
Query 8021 GCGGGCCGGCGCCTCGGTGGCGTCGAGATGGTCAAGGAGGACATCACCGGCAAGCGCGTC 8080
|| ||||| ||| |||| || ||||||| || |||||| ||||||| |||||| ||
Sbjct 2267 GCCGGCCGCCGCGTCGGCGGGGTCGAGACCATCCGCGAGGACCTCACCGGGAAGCGCATC 2326
Query 8081 GTGATGTATCAGGGCGTGCCGATGCTCGACCCGGGCGACAATCTCGCCGGCGGGCAGATT 8140
|||| | | || | ||| | ||||||||||||||||| ||||| ||| | |||
Sbjct 2327 GTGACCTGGAACGGGATCCCGTTCCTCGACCCGGGCGACAACCTCGCGGGCTCCCCGATC 2386
Query 8141 CTGCCGCAGACCGAGACGATGGGCTCGGCCAGCGATACCTCGTCGGTGTACGCAGTGCGC 8200
|||||||||||||||||| |||||| | |||| | || ||| | ||||| |||
Sbjct 2387 CTGCCGCAGACCGAGACGCAGGGCTCCTCGAGCGCGGCGTCCTCGATCTACGCCGTGAAG 2446
Query 8201 TTCGGCGGTTCCGACGGCGATCAGGCCGTGACCGGCCTGACCAACGGCGGCGTGATGGTC 8260
| |||| ||| ||| | | ||| ||| || |||||||||| | ||||
Sbjct 2447 TACGGCCAGGACGAGACCGACCGCGGCGTCACCCTGCTCGCCAACGGCGGGATCCAGGTC 2506
Query 8261 GACGACCTCGGCCAGCTCCAGGAGAAGCC 8289
||||||||||| ||| ||| | ||||
Sbjct 2507 GACGACCTCGGGATGCTGCAGTCGCAGCC 2535
>seq40050
Length=2106
Score = 156 bits (172), Expect = 1e-33
Identities = 239/333 (72%), Gaps = 6/333 (2%)
Strand=Plus/Plus
Query 3707 CGATGAGGACGGTGTGCCGCACTCGGCAATCGACCAGCTGATTCCGATGCAGGACGCGCT 3766
||| ||| ||| |||||| ||| | || ||| ||||| ||| |||||||||| |
Sbjct 1723 CGACGAGCGCGGCGTGCCGTGGTCGACGATGGACGCACTGATCCCGCAGCAGGACGCGAT 1782
Query 3767 CAACACGATCCGGTTCAACACACTGCTGGCGATGCAGTTCTCCGCATACCGGCAGCGCGT 3826
||||||||||||||||||||| || || ||||||||||||||||| | ||||||||| |
Sbjct 1783 CAACACGATCCGGTTCAACACCCTCCTCGCGATGCAGTTCTCCGCGTTCCGGCAGCGGAT 1842
Query 3827 CGCGACCGGATACGACCCG-GTGCTCCGTGACGCAAACGGCGAGATCGTCTACGTACGGG 3885
|| |||||| | ||||||| | || || |||| ||||| || || ||||| |||
Sbjct 1843 CGTGACCGGCTTCGACCCGCGAGCGACG-GACGAGAACGGGCAGTTCCTCTACCGGCGGA 1901
Query 3886 ACGCGCAGGGCA-ATCAGATCGTGGGCGTCGATGGCCAACCGGTGCCCCAGCTCCGCCAG 3944
|||| | |||| | | || || | || ||| | ||| | ||| | | ||
Sbjct 1902 ACGCCGACGGCACACCCGA-GGTCGACG-CGAACGGGAACGCGATCCCGATCCTGAACAC 1959
Query 3945 GCCGGG-CGCGTCAGTGTCGATCGGCTGTTGGTGTTTCCGGGCAAAGACACGAAGGTGTT 4003
||||| || | | | ||||| ||||| | | ||| || ||| || ||| |||||
Sbjct 1960 CCCGGGCCGTGCCGGCGTCGACCGGCTCCTCGCGTTCCCCGGCGGGGAGACGCGCGTGTT 2019
Query 4004 CGACCTCCAAGAGTCGAATCTCCAGAACTACGT 4036
||||||| | |||||||| ||| |||||||||
Sbjct 2020 CGACCTCGACGAGTCGAACCTCGGGAACTACGT 2052
>seq101490
Length=696
Score = 129 bits (142), Expect = 2e-25
Identities = 209/293 (71%), Gaps = 6/293 (2%)
Strand=Plus/Minus
Query 1352 CGGAGTG-GTCGGTCAACTTCCCCACCCTCGGCCACCTGCACGACAAGTGGGTGCGCGC- 1409
|||||| |||| || ||||||| || |||||| | ||| ||| |||| | || ||
Sbjct 300 CGGAGTACGTCG-TCGACTTCCCGACGCTCGGCGATGTGCTGGACGGGTGGCT-CGAGCA 243
Query 1410 GCACTGCACG-GTGCCCGACGGTTTCGACCAGGGCCAGCCGTTCGTCTGGTCTGACGGTC 1468
|||| || || || || ||| ||| | | ||| | |||||| | ||| ||| | |
Sbjct 242 GCAC-GCCCGAGTCCCGGACAAGTTCCATCGGGGTGACCCGTTCCGCCAGTCGGACTGGC 184
Query 1469 AGTTCTGGTGCGCGGCGAACCATTACCGGGTACGGAAGTCTGCGCGGTGGCGTGAGTCGA 1528
||||||||||| |||||||||| |||||| | ||| |||| ||| |||||| | |
Sbjct 183 AGTTCTGGTGCACGGCGAACCACTACCGGATCCGGGAGTCGGCGGAGTGGCGGCCGGAGG 124
Query 1529 AACCGATGCTCGCGGAGGCCTTCACGTATCGCCGCTCGTTGATCGTCGGACCGCAGAAGT 1588
| ||| |||| ||| |||| ||| || || |||||| |||| | | |||||||||
Sbjct 123 AGCCGCTGCTTGCGCAGGCGTTCGTCTACCGGCGCTCGCAGATCATGGCGCCGCAGAAGA 64
Query 1589 CGGGCAAGGGTCCGTGGTCAGCGTCGGTCGTCGCAGTCGAGGCGGTCGGCCCG 1641
|||| ||||| |||||| | ||| | || || | ||||| ||||| |||
Sbjct 63 CGGGGAAGGGCCCGTGGGCGGCGGGGATCACGGCGGCGGAGGCCGTCGGGCCG 11
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 133608510781142
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |