Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Castanea_20mollissima_20[genbank_20GCA_5F000763605.1_202014-10-06] 133,589 sequences; 833,240,550 total letters Query= NC_031004.1 Length=41857 Score E Sequences producing significant alignments: (Bits) Value seq35922 414 3e-111 seq40050 156 1e-33 seq101490 129 2e-25 >seq35922 Length=2553 Score = 414 bits (458), Expect = 3e-111 Identities = 609/869 (70%), Gaps = 18/869 (2%) Strand=Plus/Plus Query 7436 ATGGCTGTCACTCTCGCCCAGGCGGCGGTGCTCTCG---ACCGATCAGCACTCGCGAGGC 7492 ||||| ||||| ||| |||||| |||| ||| ||| | ||| | ||| | | | Sbjct 1670 ATGGCAGTCACCCTCATCCAGGCCGCGGCGCTGTCGGACAACGACCTGCAGACCGGCGTG 1729 Query 7493 ATTCACGAGATCTTCGTGCAGGAGTCGCCGGTCCTCGACCGGCTGCCTCTGATGGAGATC 7552 || ||||| ||| | |||| ||| || || |||||||| || | | |||||| Sbjct 1730 AT---CGAGACGTTCATCCAGGCGTCTCCCGTGCTCGACCGCGCCCCGATCCTCGAGATC 1786 Query 7553 GCGGGCAATGCCTACGCATACGACCTCGAGGCCACGCTGCCCGGCGTCGCGTTCCGCGGC 7612 |||||| || ||||| ||| || ||||| || || ||||||||||||||||||||| Sbjct 1787 CAGGGCAACGCGTACGCGTACAACACGGAGGCGACCCTCCCCGGCGTCGCGTTCCGCGGC 1846 Query 7613 GTGAACGAGGCATACGTCGAGTCGACGGGCACGTTCAACCAGCTGACCGAGCGACTGGTC 7672 ||||||||||| ||| ||||| ||||||||| ||||||||||||||||| || || Sbjct 1847 GTGAACGAGGCGTACATCGAGAGCACGGGCACGGTCAACCAGCTGACCGAGTCGCTCGTG 1906 Query 7673 ATCCTCGGTGGCGACGCCGATGTCGATCGGTTCATTCAGCAGACCCGATCGGACCGCTAC 7732 ||||| |||||||||||||| ||||| |||||||| |||||| || | ||| || Sbjct 1907 ATCCTGGGTGGCGACGCCGACGTCGACCGGTTCATCGTGCAGACGCGCGGGAACCTGAAC 1966 Query 7733 AGCCAGCGCGCCGAGCAGGACAAGCTGAAGGTCAAGGCCATCAGCTACAAGTTCAACGAT 7792 ||||||||| |||| |||||||| |||||| |||||||||| | || Sbjct 1967 GACCAGCGCGCGACGCAGACGGCCCTGAAGGTGAAGGCCGCGTCCTACAAGTTCCAGGAC 2026 Query 7793 CACTTTTTCAACGGCGACACCGCCGTGGACACAAAGGGATTCGACGGACTGAAGAAGCGT 7852 ||| |||||||||||| |||| || | ||||| |||||||| ||||||||||| Sbjct 2027 TCCTTCTTCAACGGCGACGTGACCGTCGAGCCGAAGGGCTTCGACGGCCTGAAGAAGCGC 2086 Query 7853 CTCGTCGGCAACCAGGTCATCGACGCCGGCACCAACGGCATCCCGATCGTCGGNNNNNNN 7912 ||||||||| |||||||||||||||||||| ||||| ||||| ||||||| Sbjct 2087 CTCGTCGGCGGGCAGGTCATCGACGCCGGCACGAACGGGATCCCCGTCGTCGGCAACGGT 2146 Query 7913 NNNNNNNNNNNNNNNNNNNNNTTCGACAAGCTCGACGAGCTCCTCGC-CGCGTGCCC--- 7968 |||||| ||||||||||||||||||| || |||||| Sbjct 2147 GGCAGCGACTCCTTCGCGCTCTTCGACCAGCTCGACGAGCTCCTCGCGCGGGTGCCCGGC 2206 Query 7969 --GAACGC------TGACGCCATGTACGCCAACCGTCAGGTTCGCGCCAAGACTCTGTCC 8020 | |||| | || || ||||| ||||| | | || |||| | || Sbjct 2207 CTGGACGCCTCGAACGGTGCGATCTACGCGAACCGGTCGATCATCGGGAAGATCCGCTCG 2266 Query 8021 GCGGGCCGGCGCCTCGGTGGCGTCGAGATGGTCAAGGAGGACATCACCGGCAAGCGCGTC 8080 || ||||| ||| |||| || ||||||| || |||||| ||||||| |||||| || Sbjct 2267 GCCGGCCGCCGCGTCGGCGGGGTCGAGACCATCCGCGAGGACCTCACCGGGAAGCGCATC 2326 Query 8081 GTGATGTATCAGGGCGTGCCGATGCTCGACCCGGGCGACAATCTCGCCGGCGGGCAGATT 8140 |||| | | || | ||| | ||||||||||||||||| ||||| ||| | ||| Sbjct 2327 GTGACCTGGAACGGGATCCCGTTCCTCGACCCGGGCGACAACCTCGCGGGCTCCCCGATC 2386 Query 8141 CTGCCGCAGACCGAGACGATGGGCTCGGCCAGCGATACCTCGTCGGTGTACGCAGTGCGC 8200 |||||||||||||||||| |||||| | |||| | || ||| | ||||| ||| Sbjct 2387 CTGCCGCAGACCGAGACGCAGGGCTCCTCGAGCGCGGCGTCCTCGATCTACGCCGTGAAG 2446 Query 8201 TTCGGCGGTTCCGACGGCGATCAGGCCGTGACCGGCCTGACCAACGGCGGCGTGATGGTC 8260 | |||| ||| ||| | | ||| ||| || |||||||||| | |||| Sbjct 2447 TACGGCCAGGACGAGACCGACCGCGGCGTCACCCTGCTCGCCAACGGCGGGATCCAGGTC 2506 Query 8261 GACGACCTCGGCCAGCTCCAGGAGAAGCC 8289 ||||||||||| ||| ||| | |||| Sbjct 2507 GACGACCTCGGGATGCTGCAGTCGCAGCC 2535 >seq40050 Length=2106 Score = 156 bits (172), Expect = 1e-33 Identities = 239/333 (72%), Gaps = 6/333 (2%) Strand=Plus/Plus Query 3707 CGATGAGGACGGTGTGCCGCACTCGGCAATCGACCAGCTGATTCCGATGCAGGACGCGCT 3766 ||| ||| ||| |||||| ||| | || ||| ||||| ||| |||||||||| | Sbjct 1723 CGACGAGCGCGGCGTGCCGTGGTCGACGATGGACGCACTGATCCCGCAGCAGGACGCGAT 1782 Query 3767 CAACACGATCCGGTTCAACACACTGCTGGCGATGCAGTTCTCCGCATACCGGCAGCGCGT 3826 ||||||||||||||||||||| || || ||||||||||||||||| | ||||||||| | Sbjct 1783 CAACACGATCCGGTTCAACACCCTCCTCGCGATGCAGTTCTCCGCGTTCCGGCAGCGGAT 1842 Query 3827 CGCGACCGGATACGACCCG-GTGCTCCGTGACGCAAACGGCGAGATCGTCTACGTACGGG 3885 || |||||| | ||||||| | || || |||| ||||| || || ||||| ||| Sbjct 1843 CGTGACCGGCTTCGACCCGCGAGCGACG-GACGAGAACGGGCAGTTCCTCTACCGGCGGA 1901 Query 3886 ACGCGCAGGGCA-ATCAGATCGTGGGCGTCGATGGCCAACCGGTGCCCCAGCTCCGCCAG 3944 |||| | |||| | | || || | || ||| | ||| | ||| | | || Sbjct 1902 ACGCCGACGGCACACCCGA-GGTCGACG-CGAACGGGAACGCGATCCCGATCCTGAACAC 1959 Query 3945 GCCGGG-CGCGTCAGTGTCGATCGGCTGTTGGTGTTTCCGGGCAAAGACACGAAGGTGTT 4003 ||||| || | | | ||||| ||||| | | ||| || ||| || ||| ||||| Sbjct 1960 CCCGGGCCGTGCCGGCGTCGACCGGCTCCTCGCGTTCCCCGGCGGGGAGACGCGCGTGTT 2019 Query 4004 CGACCTCCAAGAGTCGAATCTCCAGAACTACGT 4036 ||||||| | |||||||| ||| ||||||||| Sbjct 2020 CGACCTCGACGAGTCGAACCTCGGGAACTACGT 2052 >seq101490 Length=696 Score = 129 bits (142), Expect = 2e-25 Identities = 209/293 (71%), Gaps = 6/293 (2%) Strand=Plus/Minus Query 1352 CGGAGTG-GTCGGTCAACTTCCCCACCCTCGGCCACCTGCACGACAAGTGGGTGCGCGC- 1409 |||||| |||| || ||||||| || |||||| | ||| ||| |||| | || || Sbjct 300 CGGAGTACGTCG-TCGACTTCCCGACGCTCGGCGATGTGCTGGACGGGTGGCT-CGAGCA 243 Query 1410 GCACTGCACG-GTGCCCGACGGTTTCGACCAGGGCCAGCCGTTCGTCTGGTCTGACGGTC 1468 |||| || || || || ||| ||| | | ||| | |||||| | ||| ||| | | Sbjct 242 GCAC-GCCCGAGTCCCGGACAAGTTCCATCGGGGTGACCCGTTCCGCCAGTCGGACTGGC 184 Query 1469 AGTTCTGGTGCGCGGCGAACCATTACCGGGTACGGAAGTCTGCGCGGTGGCGTGAGTCGA 1528 ||||||||||| |||||||||| |||||| | ||| |||| ||| |||||| | | Sbjct 183 AGTTCTGGTGCACGGCGAACCACTACCGGATCCGGGAGTCGGCGGAGTGGCGGCCGGAGG 124 Query 1529 AACCGATGCTCGCGGAGGCCTTCACGTATCGCCGCTCGTTGATCGTCGGACCGCAGAAGT 1588 | ||| |||| ||| |||| ||| || || |||||| |||| | | ||||||||| Sbjct 123 AGCCGCTGCTTGCGCAGGCGTTCGTCTACCGGCGCTCGCAGATCATGGCGCCGCAGAAGA 64 Query 1589 CGGGCAAGGGTCCGTGGTCAGCGTCGGTCGTCGCAGTCGAGGCGGTCGGCCCG 1641 |||| ||||| |||||| | ||| | || || | ||||| ||||| ||| Sbjct 63 CGGGGAAGGGCCCGTGGGCGGCGGGGATCACGGCGGCGGAGGCCGTCGGGCCG 11 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 133608510781142