Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Castanea_20mollissima_20[genbank_20GCA_5F000763605.1_202014-10-06]
133,589 sequences; 833,240,550 total letters
Query= NC_031029.1
Length=93686
Score E
Sequences producing significant alignments: (Bits) Value
seq83807 235 3e-57
seq115307 174 9e-39
seq59665 170 1e-37
seq78026 129 4e-25
seq37323 125 4e-24
seq82131 93.3 3e-14
seq109048 91.5 9e-14
seq60277 87.8 1e-12
>seq83807
Length=947
Score = 235 bits (260), Expect = 3e-57
Identities = 374/528 (71%), Gaps = 9/528 (2%)
Strand=Plus/Plus
Query 7184 GACCGGGTCAACCGTCAGTTCACCGCGGCGGCACCGAACGCGTTGTGGGTGGCGGACCTG 7243
|||| |||| | || | |||| ||| | | |||| || | |||||||| || |
Sbjct 24 GACCTGGTCGAACGCAACTTCAGCGCCGAGCGACCGGACCGACTCTGGGTGGCCGATATC 83
Query 7244 ACCTACATCCGCACCCACTCGGGCTGGGTGTACGCGGCGTTCGTCCTGGACGTGTTCTCG 7303
||||||||||||||| |||||||||||||||||| |||||||||| ||||| | | |
Sbjct 84 ACCTACATCCGCACCTGCTCGGGCTGGGTGTACGCCGCGTTCGTCCAAGACGTCTGCACC 143
Query 7304 CGGATGGTCGTCGGCTGGCAGGTCTC-GACCACCATGCACACCGACCTCGCCCTCGACGC 7362
|| |||| |||||||||||| | ||||||| ||| |||||| || ||||| || ||
Sbjct 144 CGCCGCATCGTGGGCTGGCAGGTCGCTGACCACC-TGCGCACCGAACTGGCCCTGGAGGC 202
Query 7363 CCTGAACATGGGATTGTGGGCACGGTCG-CGTGCCGGCCACGACGTGGCCGGGCTGATCC 7421
||| | |||| |||| || | |||| || | ||| ||| || |||| ||| |
Sbjct 203 GCTGCAGATGGCGTTGT-GGATCCGTCGTCGCGAAGGCGCGGAC-TGACCGGATTGAAGC 260
Query 7422 ACCACTCCGACCGCGGAGTGCAATACCGAGCCATCCGCTACACCGAACGACTGGCCGAAG 7481
| ||||| || ||||| |||||| || | ||||||||||| | || || |
Sbjct 261 ATCACTCGGATAAAGGAGTTCAATACGTTGCGCTGCGCTACACCGAGAGTCTAGCGCTTG 320
Query 7482 CCGAAGCGGTGACATCTGTTGGCTCCAAAGGGGATTCATACGACAACGCGATGGCTGAGG 7541
| ||||| | || || || |||| || || || ||||||||||||||||| ||||
Sbjct 321 AGGGTGCGGTCGCTTCGGTCGGTTCCACCGGCGACTCCTACGACAACGCGATGGCCGAGG 380
Query 7542 CGTTCAACTCGCTGTTCAAAGCCGAATGCATCCGTAACCCCGTGATGCGCCCGCGAGGCG 7601
|||||||||| ||||||| ||||| |||||||| |||||| | | ||| | ||
Sbjct 381 CGTTCAACTCCTTGTTCAAGGCCGAGTGCATCCGCAACCCC-ACCTACCGGGGCGTGACG 439
Query 7602 G---CTGGGCAGGTGTGGGCGAGGTCGAGATCGCCGTCGCTGAGTACGTCGAATGGTTCA 7658
| ||| || ||| ||| |||||| | ||||| | |||||||| |||| ||
Sbjct 440 GTCCGTGGCGCGGCCTGGACGACGTCGAGCGTGGTGTCGCGGGCTACGTCGATTGGTACA 499
Query 7659 ACCACCGCCGCCTGCACGGCGAGATCGGACACGTCCCACCCGTCGAGT 7706
|| ||| || |||||||| ||| | || |||| || |||||||
Sbjct 500 ACACCCGACGACTGCACGGGGAGCTGGGGATGATCCCGCCGGTCGAGT 547
>seq115307
Length=544
Score = 174 bits (192), Expect = 9e-39
Identities = 158/199 (79%), Gaps = 0/199 (0%)
Strand=Plus/Minus
Query 72620 GACACCGTGATCACCGTGATCGGAAACCTGACCGCCGATCCCGAACTGCGCTTCACCCCC 72679
|| ||||| ||||| ||||||| ||||| || ||| ||||||||||||||||||||
Sbjct 199 GAAACCGTCATCACGCTGATCGGGAACCTCACGAACGACCCCGAACTGCGCTTCACCCCG 140
Query 72680 TCGGGTGCGCCGGTCGCCAACTTCACCGTCGCAAGCACCCCGCGGTACTTCGACAAGCAG 72739
|||||||| |||| ||||||||||| ||||| || || || |||||| |||
Sbjct 139 TCGGGTGCCGCGGTGGCCAACTTCACGGTCGCCTCGACTCCCCGCACGTTCGACCGTCAG 80
Query 72740 TCCAACGAGTGGAAGGACGCCGAGGCGCTCTTCCTGCGCTGCAACATCTGGCGCGAGCCG 72799
|| |||||||||||||||| |||| |||| ||| |||| ||| ||||||||||| ||
Sbjct 79 TCGAACGAGTGGAAGGACGGCGAGACGCTGTTCATGCGTTGCGCGATCTGGCGCGAAGCG 20
Query 72800 GCCGAGAACGTCACCGAGT 72818
|| ||||||||| ||||||
Sbjct 19 GCGGAGAACGTCGCCGAGT 1
>seq59665
Length=1686
Score = 170 bits (188), Expect = 1e-37
Identities = 302/434 (70%), Gaps = 10/434 (2%)
Strand=Plus/Minus
Query 58192 GCGACTGAGGGCTTCATCGACTTCCTTGACCGGAACCGACACGGATCGCCGTTCGAGCAC 58251
||||| | |||| | ||| ||| ||| || |||| ||||| |||||||||||||||
Sbjct 1360 GCGACCGGGGGCCTGATCAACTACCTGATGCGCGACCGCCACGGGTCGCCGTTCGAGCAC 1301
Query 58252 TCCGTCTTCACCTTCCTGGTCGAGTGCCCCATATTCGTTTCGCGTGAGTTCATGCGCCAC 58311
| | |||||| || || || || ||||| | || ||||||||||| |||
Sbjct 1300 AACTCGATGACCTTCTACGTGCAGGCGCCGATCTTCGTGTTCCGCGAGTTCATGCGGCAC 1241
Query 58312 CGAATCGCCTCGTACAACGAGGAATCCGGTCGATACAAGGTCATGAAGGGCGTGTTCTAC 58371
|| |||||||| ||||||||||| || || || ||| | || | ||||||||||
Sbjct 1240 CGCATCGCCTCCTACAACGAGGAGTCGGGCCGCTACCGCGAGCTGCGGCCCGTGTTCTAC 1181
Query 58372 GTCCCGGCCGACGACCGGCCGCTGGTCCAGGTGGGCAAGCCGGGTGAGTATCGATTCGAG 58431
|| ||| | |||||| ||||| ||||||||| || || | || ||| |
Sbjct 1180 GTGCCGTCGCGGGACCGGAACCTGGTGCAGGTGGGCCGCCCCGGCGCCTA-CGAGTTCCT 1122
Query 58432 GCCGGGACGC-TCGAGCAGCACGAGCTGGT-GACAGACCTGTTC--CAGCTCGCCGCCGA 58487
|||||| || ||||||||||| |||||| ||| | | || | |||| |||
Sbjct 1121 GCCGGGCAGCGACGAGCAGCACGCGCTGGTCGACGGCGCCGTGCGGCAGCAGTCCG---- 1066
Query 58488 TACCGGC-TACAACCTCTACCAGACCATGCTCGACGCCGGCATTGCCCGGGAAGTTGCGC 58546
| |||| ||| | ||||| | | ||||||||||| ||| | || || || || ||||
Sbjct 1065 TGGCGGCGTACGAGGCCTACCGGTCGATGCTCGACGCGGGCGTCGCTCGCGAGGTGGCGC 1006
Query 58547 GCGACGTCCTGCCGTTCCAGCTGTACACCTCGTTCTACGTCACCATGAACGCGCGCGGCC 58606
| ||| |||||| | | |||||| | || | ||||| || |||||||| || | |
Sbjct 1005 GGATCGTGCTGCCGCTGAACCTGTACTCGTCCATGTACGTGACGATGAACGCCCGTGCGC 946
Query 58607 TGATGAACTTCCTC 58620
||||||||||| ||
Sbjct 945 TGATGAACTTCGTC 932
>seq78026
Length=538
Score = 129 bits (142), Expect = 4e-25
Identities = 251/365 (69%), Gaps = 7/365 (2%)
Strand=Plus/Plus
Query 48873 TCGGTCGCGACGTCGAACTC--CGGCGT-ATCAATTGTCACCACAACTACACCGAGCGGG 48929
|||| ||||| ||||| | | || | ||||| || |||||||||||||||| || ||
Sbjct 26 TCGGCCGCGAGGTCGATCGCATCGAGGAGATCAACTGCCACCACAACTACACCGCGCAGG 85
Query 48930 TCGAGATCGCCGGCAAGAAAGTGTGGCTCACGCGCAAGGGTGCAATCGACGCAAGCGAGG 48989
|| | |||||||| || |||||| | |||||||| || |||||||| |||| |
Sbjct 86 AGAAGCACTTCGGCAAGACCGTCTGGCTCTCCCGCAAGGGGGCGATCGACGCGAGCGCCG 145
Query 48990 GTCGATATGGACTGATCCCCGGATCCATGGGCACCAAGTCCTATGTCGTCCGCGGCAAAG 49049
| || || ||||||||||| || ||||| | ||| || |||||| |||| |
Sbjct 146 GCCGGCCCGGGCTGATCCCCGGGTCGATGGGAGCGGCGTCGTACGTCGTCGAGGGCAGGG 205
Query 49050 GGAATGAGTCCGGCCTCTTCTCTGC-GCCC-CATGGTGCCGGCCGTCAGTATTCGCGCAC 49107
| || | || | || | | || |||| || || || || || |||| ||||| |
Sbjct 206 GCAACCCGGTCG--CGCTGCACAGCAGCCCGCACGGGGCGGGGCGCGAGTACTCGCGGTC 263
Query 49108 CCAGGCCAAGAAGCTGTTCACCCTGGATGACCTCGCCGACCGAATGAAGGGCATCGAATA 49167
| ||| |||| ||||||| || || |||| || || |||| |||||||| |
Sbjct 264 CGCGGCGCGCAAGCGCTTCACCCGTGACGATCTCGACGCGCGCATGACCGGCATCGAGTG 323
Query 49168 CCGCCACGGCGAAGAGTGGATCGACGAGATCCCGGACGCCTACAAGGACATCGACCAGGT 49227
||| || | || ||||||| ||| ||||| ||||||||||||||| |||
Sbjct 324 GGGCCGGTCGGACGCGTTCCTCGACGAACACCCCGACGCGTACAAGGACATCGACGTGGT 383
Query 49228 GATGG 49232
||||
Sbjct 384 CATGG 388
>seq37323
Length=3330
Score = 125 bits (138), Expect = 4e-24
Identities = 539/849 (63%), Gaps = 63/849 (7%)
Strand=Plus/Minus
Query 48457 GCTCGAGGCCATGGCCGAAGAGAAGGGCGTCGACCTCAAG-CATTCGCCGAAG--TGGCG 48513
||| ||||| ||||||| ||| ||| |||||| | | | |||| | | |||||
Sbjct 1955 GCTGGAGGCGCTGGCCGACGAGGCCGGCTTCGACCCGGCGTCCTACGCCAAGGCGTGGCG 1896
Query 48514 GGAACAGCTGGGCTCGCTCGGCGGCGGCAACCACTTCATCGAGCTGTGCGAGTCCGTGCA 48573
| | |||||||||||||||||| |||||||||||||||||||| | ||||| |
Sbjct 1895 GCAGCAGCTGGGCTCGCTCGGCAGCGGCAACCACTTCATCGAG------GTCTCCGTCGA 1842
Query 48574 CGAGCGTGGACCGGGCGCGATCTGGCTCTTCCTGCATTCCGGCAGCCGCGGTGTCGGCAA 48633
||| |||| | ||| | ||||| |||||||| || |||||||| || || |||||
Sbjct 1841 CGA-----GACC-GATGCGGTGTGGCTGTTCCTGCACTCGGGCAGCCGGGGCGTGGGCAA 1788
Query 48634 CAAGATCGCGCAGAAGCANNNNNNNNNNNNNNNNNNNNNNNNNNNNAAGTGGCACATTCA 48693
| |||||| ||| |||| | | || ||
Sbjct 1787 CCGGATCGCCCAGCAGCACATCAAGGTCGCGCAGGCCGAGATGACGCGGCTGTGGATCCA 1728
Query 48694 ACTCGCCAACCCCGACCTCGCCTACCTGCCTTCCGGGACCGACG-AATTCGGCGACTACA 48752
|| || ||| |||||| ||||||||| | ||| || || | |||| | |||||
Sbjct 1727 GCTGCCCGACCGCGACCTGGCCTACCTG-GTGGAGGGCACGCCGCAGTTCGACCGCTACA 1669
Query 48753 TTCGCGAGCTCCGGTGGGCACAGGCTTTCGCGCTCGAGAACCGGGCCGAAATGATGGACC 48812
| ||| || || ||||| ||| ||||| || |||||| | || ||||||||||
Sbjct 1668 TCGCCGAACTGCGATGGGCGCAGCGCTTCGCCCTGCTGAACCGCGAGGAGATGATGGACC 1609
Query 48813 GTTTCGTCCATGTGTTCACCCGGTGGCTCGAGTACTCCGATGCCGTCGAATTCGACGAGC 48872
| |||| || | || ||| | |||| || || || || || | ||
Sbjct 1608 G---CGTC-----GTGCGCCAGGTCTC-CGAGCACCTCGGTG-CGGCG--------GTGC 1567
Query 48873 TCGGTCGCGACGTCGAACTCCGGCGTATCAATTGTCACCACAACTACACCGAGCGGGTCG 48932
| ||||| ||| ||||| || |||||||||| ||| ||| ||
Sbjct 1566 AGGAGCGCGA------------GCGGATCAACTGCCACCACAACTTCACGCAGCAGGAGC 1519
Query 48933 AGATCGCCGGCAAGAAAGTGTGGCTCACGCGCAAGGGTGCAATCGACGCAAGCGAGGGTC 48992
| | |||| | || ||||| | |||||||| || ||| | || | |||| |
Sbjct 1518 GGCACTTCGGCCGTGACGTCTGGCTGTCCCGCAAGGGCGCCATCCAGGCGCGTCAGGG-C 1460
Query 48993 GATAT-GGACTGATCCCCGGATCCATGGGCACCAAGTCCTATGTCGT------CCGCGGC 49045
|| | || ||||||||||| || ||||| ||| ||||| || || ||||||
Sbjct 1459 GACCTCGGCCTGATCCCCGGGTCGATGGGGACCGCCTCCTACGTGGTGGAGGGGCGCGGC 1400
Query 49046 AAAGGGAATGAGTCCGGCCTCTTCTCTGCGCCCCATGGTGCCGGCCGTCAGTATTCGCGC 49105
| || ||| | ||| ||| |||| || || ||||| || | |||||
Sbjct 1399 GACCGG-ATG-----GCGCTCGACTCGTCGCCGCACGGCGCCGGGCGCGTGCTGTCGCGG 1346
Query 49106 ACCCAGGCCAAGAAGCTGTTCACCCTGGATGACCTCGCCGACCGAATGAAGGGCATCGAA 49165
| |||| |||| |||||| | || | || ||| |||| |||||||||
Sbjct 1345 TCGAAGGCGCGGAAGGCGTTCACGATCGAGCAGCTGCGCGAGGCGATGACGGGCATCGAG 1286
Query 49166 TACCGCCACGGCGAAGAGTGGATCGACGAGATCCCGGACGCCTACAAGGACATCGACCAG 49225
| ||| || ||| | | | |||||||||||| | ||||||||| |||||||||
Sbjct 1285 TTCCGGGACACCGAGGCCTTCCTGGACGAGATCCCGCAGGCCTACAAGCCGATCGACCAG 1226
Query 49226 GTGATGGAAGATGCCAAAGACCTGGTCGAAGTCGAGGCA-GTGCTGTCCCAGCTCATGAA 49284
||||||| || || ||||||||| || | |||| ||| |||||| | ||
Sbjct 1225 GTGATGGCCGACGCGGCCGACCTGGTCACCGT-GCGGCACACCCTGCGCCAGCTGGTCAA 1167
Query 49285 CGTGAAAGG 49293
|||||| ||
Sbjct 1166 CGTGAAGGG 1158
Score = 109 bits (120), Expect = 3e-19
Identities = 107/138 (78%), Gaps = 0/138 (0%)
Strand=Plus/Minus
Query 48171 TGCCGTTCATCCATCCTCACGTCGCCCTCATGCCGGATGCACACGGCGGCAAAGGATCTG 48230
|||| |||||||| || ||| | ||||| ||||| || || ||| || || |
Sbjct 2616 TGCCCTTCATCCACCCGCACCTGGCCCTGATGCCCGACGCGCACCTGGGGCTCGGCGCCA 2557
Query 48231 CCGTCGGCACGGTGATTCCCACGGTGGACGCCGTGATCCCGGCCGCGGTCGGCGTGGACA 48290
| |||||| ||||||| || ||| | | ||||||||| ||||||||||| || |||||||
Sbjct 2556 CGGTCGGCTCGGTGATCCCGACGCTCGGCGCCGTGATGCCGGCCGCGGTGGGGGTGGACA 2497
Query 48291 TCGGCTGCGGCATGATCG 48308
|||||||||| |||||||
Sbjct 2496 TCGGCTGCGGGATGATCG 2479
>seq82131
Length=972
Score = 93.3 bits (102), Expect = 3e-14
Identities = 146/209 (70%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 44135 GTGGACGTCATCATCCTGGCCCGCGGCGGCGGCTCGAAGGAAGACCTCCTCCCGTGGTCC 44194
|| || || ||| || | || ||||||||||| ||| ||| ||||| || || | |||
Sbjct 156 GTCGAGGTGATCGTCATCGCGCGCGGCGGCGGTTCGCTGGAGGACCTGCTGCCCTTCTCC 215
Query 44195 GACGAGGCTCTGGTTCGCGCCGCGTTCGCGTCTGCAACCCCGGTTGTGTCTGCGATTGGC 44254
||||||| || || ||||| | |||| | || ||||| || || || |||
Sbjct 216 GACGAGGGGCTCGTCCGCGCGGTCGCCGCGGCGCGCACGCCGGTGGTCAGCGCCATCGGC 275
Query 44255 CACGAGAATGATCGGCCGCTCCTCGACCGCGTTGTGGACCTTCGAGCGGCAACTCCGACG 44314
||||||| || ||| ||||||||| ||| | ||| | || || | || |||||
Sbjct 276 CACGAGAGCGACAACCCGATCCTCGACCTCGTCGCCGACGTGCGCGCCTCGACGCCGACC 335
Query 44315 GATGCAGCGAAACGTGTCGTACCCGACGT 44343
|| || || || || ||||| ||||||||
Sbjct 336 GACGCGGCCAAGCGGGTCGTGCCCGACGT 364
>seq109048
Length=609
Score = 91.5 bits (100), Expect = 9e-14
Identities = 83/105 (79%), Gaps = 0/105 (0%)
Strand=Plus/Minus
Query 72850 GGGTCGCCTCAAGCAGCGCAGCTACGAGACGAAGGAAGGCGAGAACCGGACGGTCATCGA 72909
||| || |||||||||||| | |||||| || |||||||| || || ||||||||
Sbjct 609 GGGGCGGCTCAAGCAGCGCTCGTTCGAGACCCGTGAGGGCGAGAAGCGCACCGTCATCGA 550
Query 72910 GCTCGAGGTCGAGGAGATCGGCCCCGCGCTGCGGTACGCCACCGC 72954
|||||| ||||||||| ||||||| ||||| |||||| || ||
Sbjct 549 GCTCGACGTCGAGGAGGTCGGCCCGTCGCTGAAGTACGCGACGGC 505
>seq60277
Length=808
Score = 87.8 bits (96), Expect = 1e-12
Identities = 248/378 (66%), Gaps = 6/378 (2%)
Strand=Plus/Minus
Query 7190 GTCAACCGTCAGTTCACCGCGGCGGCACCGAACGCGTTGTGGGTGGCGGACCTGACCTAC 7249
|||||||| |||| |||| | || |||||| | |||||||| |||| | ||||||
Sbjct 466 GTCAACCGCAGGTTCTACGCGCCAGCGCCGAACATGCTGTGGGTGTCGGATTTCACCTAC 407
Query 7250 ATCCGCACCCACTCGGGCTGGGTGTACGCGGCGTTCGTCCTGGACGTGTTCTCGCGGATG 7309
|| ||| |||||| || |||| ||| |||||| | ||| | | | || |
Sbjct 406 GTCGCGACCTGGGCGGGCTTCGTCTACGTGGCCTTCGTCATAGACACCTACGCCAGGCGG 347
Query 7310 GTCGTCGGCTGGCAGGTCTCGACCACCATGCACACCGACCTCGCCCTCGACGCCCTGAAC 7369
|||| || |||| || | | || ||| || | ||| |||||| |||||| |
Sbjct 346 ATCGTGGGGTGGCGGGCCAGCAGAACGGCGCATGCCAGCTTCGTCCTCGATGCCCTGGAG 287
Query 7370 ATGGGATTGTGGGCACGGTCGCGTGCCGGCCACGACGTGGCCGGGCTGATCCACCACTCC 7429
|| | || | |||| |||||| | || ||| || || || || ||| |
Sbjct 286 CAGGCTCTC----CATGATCGCCGGCCGGCT-CATCGGGGC-GGTCTCATTCATCACAGC 233
Query 7430 GACCGCGGAGTGCAATACCGAGCCATCCGCTACACCGAACGACTGGCCGAAGCCGAAGCG 7489
||||| || ||||||| ||||| |||||||| || || ||||||||||
Sbjct 232 GACCGGGGGTCGCAATACGTGTCCATCAAGTACACCGAGCGCCTCGCCGAAGCCGGGATA 173
Query 7490 GTGACATCTGTTGGCTCCAAAGGGGATTCATACGACAACGCGATGGCTGAGGCGTTCAAC 7549
| | |||| |||||| | || || ||||||||||| |||| ||| || |||||
Sbjct 172 GAGCCATCGGTTGGCAGCGTCGGCGACAGCTACGACAACGCTTTGGCCGAGACGATCAAC 113
Query 7550 TCGCTGTTCAAAGCCGAA 7567
|| | ||| ||||||
Sbjct 112 GGCCTTTACAAGGCCGAA 95
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 299182501845763
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