Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Castanea_20mollissima_20[genbank_20GCA_5F000763605.1_202014-10-06] 133,589 sequences; 833,240,550 total letters Query= NC_031029.1 Length=93686 Score E Sequences producing significant alignments: (Bits) Value seq83807 235 3e-57 seq115307 174 9e-39 seq59665 170 1e-37 seq78026 129 4e-25 seq37323 125 4e-24 seq82131 93.3 3e-14 seq109048 91.5 9e-14 seq60277 87.8 1e-12 >seq83807 Length=947 Score = 235 bits (260), Expect = 3e-57 Identities = 374/528 (71%), Gaps = 9/528 (2%) Strand=Plus/Plus Query 7184 GACCGGGTCAACCGTCAGTTCACCGCGGCGGCACCGAACGCGTTGTGGGTGGCGGACCTG 7243 |||| |||| | || | |||| ||| | | |||| || | |||||||| || | Sbjct 24 GACCTGGTCGAACGCAACTTCAGCGCCGAGCGACCGGACCGACTCTGGGTGGCCGATATC 83 Query 7244 ACCTACATCCGCACCCACTCGGGCTGGGTGTACGCGGCGTTCGTCCTGGACGTGTTCTCG 7303 ||||||||||||||| |||||||||||||||||| |||||||||| ||||| | | | Sbjct 84 ACCTACATCCGCACCTGCTCGGGCTGGGTGTACGCCGCGTTCGTCCAAGACGTCTGCACC 143 Query 7304 CGGATGGTCGTCGGCTGGCAGGTCTC-GACCACCATGCACACCGACCTCGCCCTCGACGC 7362 || |||| |||||||||||| | ||||||| ||| |||||| || ||||| || || Sbjct 144 CGCCGCATCGTGGGCTGGCAGGTCGCTGACCACC-TGCGCACCGAACTGGCCCTGGAGGC 202 Query 7363 CCTGAACATGGGATTGTGGGCACGGTCG-CGTGCCGGCCACGACGTGGCCGGGCTGATCC 7421 ||| | |||| |||| || | |||| || | ||| ||| || |||| ||| | Sbjct 203 GCTGCAGATGGCGTTGT-GGATCCGTCGTCGCGAAGGCGCGGAC-TGACCGGATTGAAGC 260 Query 7422 ACCACTCCGACCGCGGAGTGCAATACCGAGCCATCCGCTACACCGAACGACTGGCCGAAG 7481 | ||||| || ||||| |||||| || | ||||||||||| | || || | Sbjct 261 ATCACTCGGATAAAGGAGTTCAATACGTTGCGCTGCGCTACACCGAGAGTCTAGCGCTTG 320 Query 7482 CCGAAGCGGTGACATCTGTTGGCTCCAAAGGGGATTCATACGACAACGCGATGGCTGAGG 7541 | ||||| | || || || |||| || || || ||||||||||||||||| |||| Sbjct 321 AGGGTGCGGTCGCTTCGGTCGGTTCCACCGGCGACTCCTACGACAACGCGATGGCCGAGG 380 Query 7542 CGTTCAACTCGCTGTTCAAAGCCGAATGCATCCGTAACCCCGTGATGCGCCCGCGAGGCG 7601 |||||||||| ||||||| ||||| |||||||| |||||| | | ||| | || Sbjct 381 CGTTCAACTCCTTGTTCAAGGCCGAGTGCATCCGCAACCCC-ACCTACCGGGGCGTGACG 439 Query 7602 G---CTGGGCAGGTGTGGGCGAGGTCGAGATCGCCGTCGCTGAGTACGTCGAATGGTTCA 7658 | ||| || ||| ||| |||||| | ||||| | |||||||| |||| || Sbjct 440 GTCCGTGGCGCGGCCTGGACGACGTCGAGCGTGGTGTCGCGGGCTACGTCGATTGGTACA 499 Query 7659 ACCACCGCCGCCTGCACGGCGAGATCGGACACGTCCCACCCGTCGAGT 7706 || ||| || |||||||| ||| | || |||| || ||||||| Sbjct 500 ACACCCGACGACTGCACGGGGAGCTGGGGATGATCCCGCCGGTCGAGT 547 >seq115307 Length=544 Score = 174 bits (192), Expect = 9e-39 Identities = 158/199 (79%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 72620 GACACCGTGATCACCGTGATCGGAAACCTGACCGCCGATCCCGAACTGCGCTTCACCCCC 72679 || ||||| ||||| ||||||| ||||| || ||| |||||||||||||||||||| Sbjct 199 GAAACCGTCATCACGCTGATCGGGAACCTCACGAACGACCCCGAACTGCGCTTCACCCCG 140 Query 72680 TCGGGTGCGCCGGTCGCCAACTTCACCGTCGCAAGCACCCCGCGGTACTTCGACAAGCAG 72739 |||||||| |||| ||||||||||| ||||| || || || |||||| ||| Sbjct 139 TCGGGTGCCGCGGTGGCCAACTTCACGGTCGCCTCGACTCCCCGCACGTTCGACCGTCAG 80 Query 72740 TCCAACGAGTGGAAGGACGCCGAGGCGCTCTTCCTGCGCTGCAACATCTGGCGCGAGCCG 72799 || |||||||||||||||| |||| |||| ||| |||| ||| ||||||||||| || Sbjct 79 TCGAACGAGTGGAAGGACGGCGAGACGCTGTTCATGCGTTGCGCGATCTGGCGCGAAGCG 20 Query 72800 GCCGAGAACGTCACCGAGT 72818 || ||||||||| |||||| Sbjct 19 GCGGAGAACGTCGCCGAGT 1 >seq59665 Length=1686 Score = 170 bits (188), Expect = 1e-37 Identities = 302/434 (70%), Gaps = 10/434 (2%) Strand=Plus/Minus Query 58192 GCGACTGAGGGCTTCATCGACTTCCTTGACCGGAACCGACACGGATCGCCGTTCGAGCAC 58251 ||||| | |||| | ||| ||| ||| || |||| ||||| ||||||||||||||| Sbjct 1360 GCGACCGGGGGCCTGATCAACTACCTGATGCGCGACCGCCACGGGTCGCCGTTCGAGCAC 1301 Query 58252 TCCGTCTTCACCTTCCTGGTCGAGTGCCCCATATTCGTTTCGCGTGAGTTCATGCGCCAC 58311 | | |||||| || || || || ||||| | || ||||||||||| ||| Sbjct 1300 AACTCGATGACCTTCTACGTGCAGGCGCCGATCTTCGTGTTCCGCGAGTTCATGCGGCAC 1241 Query 58312 CGAATCGCCTCGTACAACGAGGAATCCGGTCGATACAAGGTCATGAAGGGCGTGTTCTAC 58371 || |||||||| ||||||||||| || || || ||| | || | |||||||||| Sbjct 1240 CGCATCGCCTCCTACAACGAGGAGTCGGGCCGCTACCGCGAGCTGCGGCCCGTGTTCTAC 1181 Query 58372 GTCCCGGCCGACGACCGGCCGCTGGTCCAGGTGGGCAAGCCGGGTGAGTATCGATTCGAG 58431 || ||| | |||||| ||||| ||||||||| || || | || ||| | Sbjct 1180 GTGCCGTCGCGGGACCGGAACCTGGTGCAGGTGGGCCGCCCCGGCGCCTA-CGAGTTCCT 1122 Query 58432 GCCGGGACGC-TCGAGCAGCACGAGCTGGT-GACAGACCTGTTC--CAGCTCGCCGCCGA 58487 |||||| || ||||||||||| |||||| ||| | | || | |||| ||| Sbjct 1121 GCCGGGCAGCGACGAGCAGCACGCGCTGGTCGACGGCGCCGTGCGGCAGCAGTCCG---- 1066 Query 58488 TACCGGC-TACAACCTCTACCAGACCATGCTCGACGCCGGCATTGCCCGGGAAGTTGCGC 58546 | |||| ||| | ||||| | | ||||||||||| ||| | || || || || |||| Sbjct 1065 TGGCGGCGTACGAGGCCTACCGGTCGATGCTCGACGCGGGCGTCGCTCGCGAGGTGGCGC 1006 Query 58547 GCGACGTCCTGCCGTTCCAGCTGTACACCTCGTTCTACGTCACCATGAACGCGCGCGGCC 58606 | ||| |||||| | | |||||| | || | ||||| || |||||||| || | | Sbjct 1005 GGATCGTGCTGCCGCTGAACCTGTACTCGTCCATGTACGTGACGATGAACGCCCGTGCGC 946 Query 58607 TGATGAACTTCCTC 58620 ||||||||||| || Sbjct 945 TGATGAACTTCGTC 932 >seq78026 Length=538 Score = 129 bits (142), Expect = 4e-25 Identities = 251/365 (69%), Gaps = 7/365 (2%) Strand=Plus/Plus Query 48873 TCGGTCGCGACGTCGAACTC--CGGCGT-ATCAATTGTCACCACAACTACACCGAGCGGG 48929 |||| ||||| ||||| | | || | ||||| || |||||||||||||||| || || Sbjct 26 TCGGCCGCGAGGTCGATCGCATCGAGGAGATCAACTGCCACCACAACTACACCGCGCAGG 85 Query 48930 TCGAGATCGCCGGCAAGAAAGTGTGGCTCACGCGCAAGGGTGCAATCGACGCAAGCGAGG 48989 || | |||||||| || |||||| | |||||||| || |||||||| |||| | Sbjct 86 AGAAGCACTTCGGCAAGACCGTCTGGCTCTCCCGCAAGGGGGCGATCGACGCGAGCGCCG 145 Query 48990 GTCGATATGGACTGATCCCCGGATCCATGGGCACCAAGTCCTATGTCGTCCGCGGCAAAG 49049 | || || ||||||||||| || ||||| | ||| || |||||| |||| | Sbjct 146 GCCGGCCCGGGCTGATCCCCGGGTCGATGGGAGCGGCGTCGTACGTCGTCGAGGGCAGGG 205 Query 49050 GGAATGAGTCCGGCCTCTTCTCTGC-GCCC-CATGGTGCCGGCCGTCAGTATTCGCGCAC 49107 | || | || | || | | || |||| || || || || || |||| ||||| | Sbjct 206 GCAACCCGGTCG--CGCTGCACAGCAGCCCGCACGGGGCGGGGCGCGAGTACTCGCGGTC 263 Query 49108 CCAGGCCAAGAAGCTGTTCACCCTGGATGACCTCGCCGACCGAATGAAGGGCATCGAATA 49167 | ||| |||| ||||||| || || |||| || || |||| |||||||| | Sbjct 264 CGCGGCGCGCAAGCGCTTCACCCGTGACGATCTCGACGCGCGCATGACCGGCATCGAGTG 323 Query 49168 CCGCCACGGCGAAGAGTGGATCGACGAGATCCCGGACGCCTACAAGGACATCGACCAGGT 49227 ||| || | || ||||||| ||| ||||| ||||||||||||||| ||| Sbjct 324 GGGCCGGTCGGACGCGTTCCTCGACGAACACCCCGACGCGTACAAGGACATCGACGTGGT 383 Query 49228 GATGG 49232 |||| Sbjct 384 CATGG 388 >seq37323 Length=3330 Score = 125 bits (138), Expect = 4e-24 Identities = 539/849 (63%), Gaps = 63/849 (7%) Strand=Plus/Minus Query 48457 GCTCGAGGCCATGGCCGAAGAGAAGGGCGTCGACCTCAAG-CATTCGCCGAAG--TGGCG 48513 ||| ||||| ||||||| ||| ||| |||||| | | | |||| | | ||||| Sbjct 1955 GCTGGAGGCGCTGGCCGACGAGGCCGGCTTCGACCCGGCGTCCTACGCCAAGGCGTGGCG 1896 Query 48514 GGAACAGCTGGGCTCGCTCGGCGGCGGCAACCACTTCATCGAGCTGTGCGAGTCCGTGCA 48573 | | |||||||||||||||||| |||||||||||||||||||| | ||||| | Sbjct 1895 GCAGCAGCTGGGCTCGCTCGGCAGCGGCAACCACTTCATCGAG------GTCTCCGTCGA 1842 Query 48574 CGAGCGTGGACCGGGCGCGATCTGGCTCTTCCTGCATTCCGGCAGCCGCGGTGTCGGCAA 48633 ||| |||| | ||| | ||||| |||||||| || |||||||| || || ||||| Sbjct 1841 CGA-----GACC-GATGCGGTGTGGCTGTTCCTGCACTCGGGCAGCCGGGGCGTGGGCAA 1788 Query 48634 CAAGATCGCGCAGAAGCANNNNNNNNNNNNNNNNNNNNNNNNNNNNAAGTGGCACATTCA 48693 | |||||| ||| |||| | | || || Sbjct 1787 CCGGATCGCCCAGCAGCACATCAAGGTCGCGCAGGCCGAGATGACGCGGCTGTGGATCCA 1728 Query 48694 ACTCGCCAACCCCGACCTCGCCTACCTGCCTTCCGGGACCGACG-AATTCGGCGACTACA 48752 || || ||| |||||| ||||||||| | ||| || || | |||| | ||||| Sbjct 1727 GCTGCCCGACCGCGACCTGGCCTACCTG-GTGGAGGGCACGCCGCAGTTCGACCGCTACA 1669 Query 48753 TTCGCGAGCTCCGGTGGGCACAGGCTTTCGCGCTCGAGAACCGGGCCGAAATGATGGACC 48812 | ||| || || ||||| ||| ||||| || |||||| | || |||||||||| Sbjct 1668 TCGCCGAACTGCGATGGGCGCAGCGCTTCGCCCTGCTGAACCGCGAGGAGATGATGGACC 1609 Query 48813 GTTTCGTCCATGTGTTCACCCGGTGGCTCGAGTACTCCGATGCCGTCGAATTCGACGAGC 48872 | |||| || | || ||| | |||| || || || || || | || Sbjct 1608 G---CGTC-----GTGCGCCAGGTCTC-CGAGCACCTCGGTG-CGGCG--------GTGC 1567 Query 48873 TCGGTCGCGACGTCGAACTCCGGCGTATCAATTGTCACCACAACTACACCGAGCGGGTCG 48932 | ||||| ||| ||||| || |||||||||| ||| ||| || Sbjct 1566 AGGAGCGCGA------------GCGGATCAACTGCCACCACAACTTCACGCAGCAGGAGC 1519 Query 48933 AGATCGCCGGCAAGAAAGTGTGGCTCACGCGCAAGGGTGCAATCGACGCAAGCGAGGGTC 48992 | | |||| | || ||||| | |||||||| || ||| | || | |||| | Sbjct 1518 GGCACTTCGGCCGTGACGTCTGGCTGTCCCGCAAGGGCGCCATCCAGGCGCGTCAGGG-C 1460 Query 48993 GATAT-GGACTGATCCCCGGATCCATGGGCACCAAGTCCTATGTCGT------CCGCGGC 49045 || | || ||||||||||| || ||||| ||| ||||| || || |||||| Sbjct 1459 GACCTCGGCCTGATCCCCGGGTCGATGGGGACCGCCTCCTACGTGGTGGAGGGGCGCGGC 1400 Query 49046 AAAGGGAATGAGTCCGGCCTCTTCTCTGCGCCCCATGGTGCCGGCCGTCAGTATTCGCGC 49105 | || ||| | ||| ||| |||| || || ||||| || | ||||| Sbjct 1399 GACCGG-ATG-----GCGCTCGACTCGTCGCCGCACGGCGCCGGGCGCGTGCTGTCGCGG 1346 Query 49106 ACCCAGGCCAAGAAGCTGTTCACCCTGGATGACCTCGCCGACCGAATGAAGGGCATCGAA 49165 | |||| |||| |||||| | || | || ||| |||| ||||||||| Sbjct 1345 TCGAAGGCGCGGAAGGCGTTCACGATCGAGCAGCTGCGCGAGGCGATGACGGGCATCGAG 1286 Query 49166 TACCGCCACGGCGAAGAGTGGATCGACGAGATCCCGGACGCCTACAAGGACATCGACCAG 49225 | ||| || ||| | | | |||||||||||| | ||||||||| ||||||||| Sbjct 1285 TTCCGGGACACCGAGGCCTTCCTGGACGAGATCCCGCAGGCCTACAAGCCGATCGACCAG 1226 Query 49226 GTGATGGAAGATGCCAAAGACCTGGTCGAAGTCGAGGCA-GTGCTGTCCCAGCTCATGAA 49284 ||||||| || || ||||||||| || | |||| ||| |||||| | || Sbjct 1225 GTGATGGCCGACGCGGCCGACCTGGTCACCGT-GCGGCACACCCTGCGCCAGCTGGTCAA 1167 Query 49285 CGTGAAAGG 49293 |||||| || Sbjct 1166 CGTGAAGGG 1158 Score = 109 bits (120), Expect = 3e-19 Identities = 107/138 (78%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 48171 TGCCGTTCATCCATCCTCACGTCGCCCTCATGCCGGATGCACACGGCGGCAAAGGATCTG 48230 |||| |||||||| || ||| | ||||| ||||| || || ||| || || | Sbjct 2616 TGCCCTTCATCCACCCGCACCTGGCCCTGATGCCCGACGCGCACCTGGGGCTCGGCGCCA 2557 Query 48231 CCGTCGGCACGGTGATTCCCACGGTGGACGCCGTGATCCCGGCCGCGGTCGGCGTGGACA 48290 | |||||| ||||||| || ||| | | ||||||||| ||||||||||| || ||||||| Sbjct 2556 CGGTCGGCTCGGTGATCCCGACGCTCGGCGCCGTGATGCCGGCCGCGGTGGGGGTGGACA 2497 Query 48291 TCGGCTGCGGCATGATCG 48308 |||||||||| ||||||| Sbjct 2496 TCGGCTGCGGGATGATCG 2479 >seq82131 Length=972 Score = 93.3 bits (102), Expect = 3e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 44135 GTGGACGTCATCATCCTGGCCCGCGGCGGCGGCTCGAAGGAAGACCTCCTCCCGTGGTCC 44194 || || || ||| || | || ||||||||||| ||| ||| ||||| || || | ||| Sbjct 156 GTCGAGGTGATCGTCATCGCGCGCGGCGGCGGTTCGCTGGAGGACCTGCTGCCCTTCTCC 215 Query 44195 GACGAGGCTCTGGTTCGCGCCGCGTTCGCGTCTGCAACCCCGGTTGTGTCTGCGATTGGC 44254 ||||||| || || ||||| | |||| | || ||||| || || || ||| Sbjct 216 GACGAGGGGCTCGTCCGCGCGGTCGCCGCGGCGCGCACGCCGGTGGTCAGCGCCATCGGC 275 Query 44255 CACGAGAATGATCGGCCGCTCCTCGACCGCGTTGTGGACCTTCGAGCGGCAACTCCGACG 44314 ||||||| || ||| ||||||||| ||| | ||| | || || | || ||||| Sbjct 276 CACGAGAGCGACAACCCGATCCTCGACCTCGTCGCCGACGTGCGCGCCTCGACGCCGACC 335 Query 44315 GATGCAGCGAAACGTGTCGTACCCGACGT 44343 || || || || || ||||| |||||||| Sbjct 336 GACGCGGCCAAGCGGGTCGTGCCCGACGT 364 >seq109048 Length=609 Score = 91.5 bits (100), Expect = 9e-14 Identities = 83/105 (79%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 72850 GGGTCGCCTCAAGCAGCGCAGCTACGAGACGAAGGAAGGCGAGAACCGGACGGTCATCGA 72909 ||| || |||||||||||| | |||||| || |||||||| || || |||||||| Sbjct 609 GGGGCGGCTCAAGCAGCGCTCGTTCGAGACCCGTGAGGGCGAGAAGCGCACCGTCATCGA 550 Query 72910 GCTCGAGGTCGAGGAGATCGGCCCCGCGCTGCGGTACGCCACCGC 72954 |||||| ||||||||| ||||||| ||||| |||||| || || Sbjct 549 GCTCGACGTCGAGGAGGTCGGCCCGTCGCTGAAGTACGCGACGGC 505 >seq60277 Length=808 Score = 87.8 bits (96), Expect = 1e-12 Identities = 248/378 (66%), Gaps = 6/378 (2%) Strand=Plus/Minus Query 7190 GTCAACCGTCAGTTCACCGCGGCGGCACCGAACGCGTTGTGGGTGGCGGACCTGACCTAC 7249 |||||||| |||| |||| | || |||||| | |||||||| |||| | |||||| Sbjct 466 GTCAACCGCAGGTTCTACGCGCCAGCGCCGAACATGCTGTGGGTGTCGGATTTCACCTAC 407 Query 7250 ATCCGCACCCACTCGGGCTGGGTGTACGCGGCGTTCGTCCTGGACGTGTTCTCGCGGATG 7309 || ||| |||||| || |||| ||| |||||| | ||| | | | || | Sbjct 406 GTCGCGACCTGGGCGGGCTTCGTCTACGTGGCCTTCGTCATAGACACCTACGCCAGGCGG 347 Query 7310 GTCGTCGGCTGGCAGGTCTCGACCACCATGCACACCGACCTCGCCCTCGACGCCCTGAAC 7369 |||| || |||| || | | || ||| || | ||| |||||| |||||| | Sbjct 346 ATCGTGGGGTGGCGGGCCAGCAGAACGGCGCATGCCAGCTTCGTCCTCGATGCCCTGGAG 287 Query 7370 ATGGGATTGTGGGCACGGTCGCGTGCCGGCCACGACGTGGCCGGGCTGATCCACCACTCC 7429 || | || | |||| |||||| | || ||| || || || || ||| | Sbjct 286 CAGGCTCTC----CATGATCGCCGGCCGGCT-CATCGGGGC-GGTCTCATTCATCACAGC 233 Query 7430 GACCGCGGAGTGCAATACCGAGCCATCCGCTACACCGAACGACTGGCCGAAGCCGAAGCG 7489 ||||| || ||||||| ||||| |||||||| || || |||||||||| Sbjct 232 GACCGGGGGTCGCAATACGTGTCCATCAAGTACACCGAGCGCCTCGCCGAAGCCGGGATA 173 Query 7490 GTGACATCTGTTGGCTCCAAAGGGGATTCATACGACAACGCGATGGCTGAGGCGTTCAAC 7549 | | |||| |||||| | || || ||||||||||| |||| ||| || ||||| Sbjct 172 GAGCCATCGGTTGGCAGCGTCGGCGACAGCTACGACAACGCTTTGGCCGAGACGATCAAC 113 Query 7550 TCGCTGTTCAAAGCCGAA 7567 || | ||| |||||| Sbjct 112 GGCCTTTACAAGGCCGAA 95 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 299182501845763