Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Castanea_20mollissima_20[genbank_20GCA_5F000763605.1_202014-10-06]
133,589 sequences; 833,240,550 total letters
Query= NC_031033.1
Length=217124
Score E
Sequences producing significant alignments: (Bits) Value
seq99200 140 4e-28
seq57685 127 3e-24
seq11270 120 4e-22
seq588 96.9 5e-15
>seq99200
Length=725
Score = 140 bits (154), Expect = 4e-28
Identities = 327/492 (66%), Gaps = 6/492 (1%)
Strand=Plus/Plus
Query 48161 ACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTT 48220
||||||||| | | || | ||||| || ||||| ||||| ||||| || || | ||
Sbjct 234 ACCTTCATCACGAGAGATCAGCTCGTTGGAGAATGTCAGACCAGGCATGAGACCTCTCTT 293
Query 48221 TTTGAGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAA 48280
|||||||| || || | |||||||| || || ||||| ||||| || ||||| || ||
Sbjct 294 CTTGAGCCAGAAAATGGAGGCGAAAGACCCGGAGAAGAAGATGCCCTCAACGGCGGCGAA 353
Query 48281 TGCGGTAAGTCTCTCTCCGTAACTGGCTTCGTTGTGT---ATCCACCGTTGTGCCCAATC 48337
||| || | | || ||||| ||| || | ||||| | ||||| ||
Sbjct 354 TGCCACCAGACGTTGGGCGAAACTGCTTTCCTTATCAGAGATCCATCTCAACGCCCACTC 413
Query 48338 AGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGAAAGtttttttCATT 48397
||||||||| | || || || || || ||||||| ||||| | | ||| | ||
Sbjct 414 AGCCTTCTTGCGGATGCATGGAATAGTGTCGATAGCATCGAAGAGGTACTGTTTCTGCTT 473
Query 48398 GCTATCTTTAACGTAAGTATCTATTAAAAGACTATACATTTCGGAGTGAATATTTTCAAT 48457
||||| || | ||||| || | | || |||||||||||||| ||||| || ||
Sbjct 474 TGGCTCTTTCACAAATGTATCAATGAGCAAGCTGTACATTTCGGAGTGGATATTCTCCAT 533
Query 48458 TGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATCTGTACCTCCGTACAAAATCG 48517
||||| || || ||||| |||| || |||| | || ||||| | ||||
Sbjct 534 CATGATCTGGAAACCATAAAAGCATCGAGCCTCTGGTACTTGCACCTCACCCGAGAATCT 593
Query 48518 TTCAGCCAAATTCTCATTTACTATTCCATCACTAGCAGCAAAAAATGCTAATACATGTTT 48577
|| | | ||||| || || || || ||| ||||| || || || | || |||
Sbjct 594 CTCGACAAGGTTCTCGTTGACAATACCGTCAGAGGCAGCGAAGAAAGCAAGGACGTGTGA 653
Query 48578 AATAAAATATTTTTCGTTGGAAGTCAGTTTATT---CCAGTCATTGATATCTTTTGATAT 48634
||||| ||| | || | | | || || || |||||| | ||||||||||| |
Sbjct 654 GATAAAGTATCTCTCATCGTCGTTGAGCTTGTTGTGCCAGTCGTGCATATCTTTTGAGAG 713
Query 48635 ATCTACTTCTTC 48646
||| || |||||
Sbjct 714 ATCCACCTCTTC 725
>seq57685
Length=1792
Score = 127 bits (140), Expect = 3e-24
Identities = 401/618 (65%), Gaps = 4/618 (1%)
Strand=Plus/Plus
Query 77913 GTATATAGCCGTTCAAATTCATCTCCCCAAACATCATCCAATCCAGGGCATTCATTTGGG 77972
||| | |||| || || ||||| || | || ||| | | |||||||| || || |||
Sbjct 1176 GTAGAGAGCC--TCGAACTCATCGCCATAGACGTCAGCAAGACCAGGGCACTCGTTCGGG 1233
Query 77973 CACATCAATGACCAGTCACCATCTTCCTTAACTCGTTTCATAAAGAGATCAGGTATCCAT 78032
||||||| | ||| || |||| | || || || ||||| || ||||| || |||||
Sbjct 1234 CACATCAGCGTCCAATCTCCATTCTGCTCGACACGCTTCATGAAAAGATCGGGAATCCAG 1293
Query 78033 AGAGCAATAAATAGATCTCGGGTTCTATGTTCTTCATTTCCTGTATTCTTTTTAAGATCG 78092
|| ||| || || || || | | || || || || ||||| ||||||
Sbjct 1294 AGTGCATAGAAGAGGTCACGAGCACGGACCTCCTCCTTGCCGTGGTTCTTGCGAAGATCC 1353
Query 78093 AGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATATTGCCATAACTCCAGGTCGT 78152
|| || | | | ||||| |||||||| || || || || || | | || || ||
Sbjct 1354 AGGAAGGCGAAGACATCAGCGTGCCATGGCTCGAGGTACATGGCAAAGGCGCCGGGACGC 1413
Query 78153 TTATTACCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATA 78212
|| || || || || || | ||| | || || || || | || | | |||||| |
Sbjct 1414 TTGTTGCCACCTTGGTCGACATAACGAGCAGTATTGTTGAAGACACGAAGCATTGGTACC 1473
Query 78213 ATACCGTTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTA 78272
| ||| || ||||| ||||| || || ||| || ||| | || || || |
Sbjct 1474 AGACCATTGGATGTGCCATTGGTGCCGCCAATGTACGAACCAGTCGCACGGATGCGGTGA 1533
Query 78273 ATGGATATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCG 78332
| | | ||| || || || || |||| || || | ||||| || | |||||||
Sbjct 1534 ACGTTGAACCCGATGCCGCCAGCATTCTTCGAGATCATTGCGCAGGTCTTGAGTGTATCG 1593
Query 78333 TAGATACCCTCTATACTGTCATCCATCATGTTAAGAAGAAAACAGCTAGACATTTGATGA 78392
||||||||||| || ||||| ||| | | || | || || ||| | || || |
Sbjct 1594 TAGATACCCTCGATGCTGTCCTCCTTGACGTCGATGAGGAAGCAGGAGGCCAGCTGTGGG 1653
Query 78393 TGAACAGTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGA-AAG 78451
| ||| || ||| | || | |||||| || || ||||| || | || | || | |
Sbjct 1654 TTGGGAGTACCAGCACTGAAGAGTGTCGGCGAAGCGTGCGTGAAGTACTTGTTTGACATG 1713
Query 78452 TAGATTGTATGTTTCAATAGCTGATTCTATGTCCCATTGATGAATTCCTACCGCTACACG 78511
||| ||||| || || || || | || || ||| |||||| || || || |||||
Sbjct 1714 TAG-TTGTAGGTCTCGATGGCAGCCTCGATATCCTCGCCATGAATGCCAACGGCGACACG 1772
Query 78512 CATCAACATATGCTGAGG 78529
||| | ||| ||||||||
Sbjct 1773 CATGATCATCTGCTGAGG 1790
>seq11270
Length=18388
Score = 120 bits (132), Expect = 4e-22
Identities = 232/340 (68%), Gaps = 2/340 (1%)
Strand=Plus/Plus
Query 48141 CATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGA 48200
|| || ||||| || || || ||||| |||| || || ||||| || || || |
Sbjct 5488 CACGCGAAATCGCAGTGGAGGCCTTCGTCTCGCGAGATCAACTCGTTGGAGAAGGTTAAC 5547
Query 48201 CCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGAT-CCAGAAAAGAA 48259
|||||||||| || || ||||| ||||||||||| | ||| ||| | || || |||||
Sbjct 5548 CCGGGCATTAACCCGCGCTTTTTTAGCCAAAATATCG-CGCAGAAGCTACCGGAGAAGAA 5606
Query 48260 TATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACTGGCTTCGTTGTGTAT 48319
|||||||| ||| || || ||| | || ||||| || | || || || ||
Sbjct 5607 AATGCCTTCGACGCAGGCGAAAGCGATGAGCCTCTCGGCGAACGATTCTCCGCCGTCGAT 5666
Query 48320 CCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAA 48379
|||||| | ||||| || ||||||||| || ||||| | || || || || | ||
Sbjct 5667 CCACCGCAGGGCCCACTCGGCCTTCTTCGCCACGCAAGGAACGGTCTCCATCGCGTGGAA 5726
Query 48380 GAGAAAGtttttttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATACATTTC 48439
|| ||| || || || || | || || || | || ||||| ||||||||
Sbjct 5727 CAGCCGGTTCTTCTCGGCCGAGTCCTTGATATAGGTCTCGAGCAAGAGACTGTACATTTC 5786
Query 48440 GGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAA 48479
||||| ||||| || || || ||||| || || || |||
Sbjct 5787 AGAGTGGATATTCTCGATCGCAATCTGGAAGCCATAGAAA 5826
>seq588
Length=109198
Score = 96.9 bits (106), Expect = 5e-15
Identities = 117/157 (75%), Gaps = 2/157 (1%)
Strand=Plus/Minus
Query 77897 CTCTCTTTCATATTGAGTATATAGCCGTTCAAATTCATCTCCCCAAACATCATCCAATCC 77956
|||||||||||| || || || | ||||||| || |||||| ||| |||| ||
Sbjct 13713 CTCTCTTTCATACTGGGTGTACAATTTCTCAAATTTGTCACCCCAACAATCTGCCAAACC 13654
Query 77957 AGGGCATTCATTTGGGCACATCAATGACCAGTCACCATCTTCCTT-AACTCGTTTCATAA 78015
|| | ||||| ||||| | ||||||||| || |||| | | || ||||| || ||| |
Sbjct 13653 TGGAGACTCATTAGGGCAAAACAATGACCATTCTCCAT-TGCTTTGAACTCTTTCCATGA 13595
Query 78016 AGAGATCAGGTATCCATAGAGCAATAAATAGATCTCG 78052
|||||||||| | ||| |||||| ||| ||||| ||
Sbjct 13594 AGAGATCAGGAACCCAAAGAGCATAAAACAGATCACG 13558
Score = 95.1 bits (104), Expect = 2e-14
Identities = 157/224 (70%), Gaps = 2/224 (1%)
Strand=Plus/Minus
Query 78158 ACCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 78217
||| || ||||| | ||||| || || | ||| | || | | |||||||| ||| ||
Sbjct 13263 ACCCCCTTGATCAACATATCGTGCAGTATCATTGAATACCCGTAGCATTGGAACAATGCC 13204
Query 78218 GTTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTAATGGA 78277
|||||||| |||||||||||| ||||||||| || | || |||||||| || ||
Sbjct 13203 ATTAGATGTCCCATTTGTTCCACGAATATAACTGCCTGTAGCACGAATATTGTGAACTGA 13144
Query 78278 TATCCCTATTCCTCCTGCCATCTTAGAT-ATTAGAGCGCAACGTTTCAATGTATCGTAGA 78336
| || |||||||| | || || | | || | ||| || ||| || || || || |
Sbjct 13143 GACACCAATTCCTCCAG-CAGATTTGCTAATGATAGCACACTCTTTTAAAGTCTCATATA 13085
Query 78337 TACCCTCTATACTGTCATCCATCATGTTAAGAAGAAAACAGCTA 78380
| || || ||||| ||||| ||||| | ||| || || |||
Sbjct 13084 TGCCTTCAATACTATCATCTTTCATGCACACAAGGAAGCAACTA 13041
Score = 87.8 bits (96), Expect = 2e-12
Identities = 140/199 (70%), Gaps = 4/199 (2%)
Strand=Plus/Minus
Query 77145 ACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGATTCATTGTTTCCCAAAATT 77204
||||||||| |||||||||| ||||||||||| | | ||||||||||| | |||
Sbjct 15452 ACTCTACGACTGTAAATATTGGAAGTATATGGTTCAAAGCACTCATTGTTTCCAAGAATC 15393
Query 77205 TGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCAATAAACTATTTCTGAGACCATGTGTT 77264
|| ||| |||||||||||||| || || | | | |||||| |||| | ||
Sbjct 15392 TGGCTAGTGGAAGCAGTTGGCATGGGAGCTATAAGAAGTGAATTTCTAGCACCA--TTTT 15335
Query 77265 CTGATTTTATCT--TTTAGATATTTCCAATCCCAAAGATCTGAAGGTACAACATCCCAAA 77322
||| | |||| | ||| ||||||||||| |||||||| ||| ||| |||| |
Sbjct 15334 TGGATATCATCTCCCTAAGAGCATTCCAATCCCACAGATCTGAGGGTGTCACACCCCACA 15275
Query 77323 GATCGTATTGTAGAATTCC 77341
|| || ||||||||
Sbjct 15274 TGTCTGGCTGAAGAATTCC 15256
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 693508798620960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |