Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Castanea_20mollissima_20[genbank_20GCA_5F000763605.1_202014-10-06] 133,589 sequences; 833,240,550 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq99200 140 4e-28 seq57685 127 3e-24 seq11270 120 4e-22 seq588 96.9 5e-15 >seq99200 Length=725 Score = 140 bits (154), Expect = 4e-28 Identities = 327/492 (66%), Gaps = 6/492 (1%) Strand=Plus/Plus Query 48161 ACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTT 48220 ||||||||| | | || | ||||| || ||||| ||||| ||||| || || | || Sbjct 234 ACCTTCATCACGAGAGATCAGCTCGTTGGAGAATGTCAGACCAGGCATGAGACCTCTCTT 293 Query 48221 TTTGAGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAA 48280 |||||||| || || | |||||||| || || ||||| ||||| || ||||| || || Sbjct 294 CTTGAGCCAGAAAATGGAGGCGAAAGACCCGGAGAAGAAGATGCCCTCAACGGCGGCGAA 353 Query 48281 TGCGGTAAGTCTCTCTCCGTAACTGGCTTCGTTGTGT---ATCCACCGTTGTGCCCAATC 48337 ||| || | | || ||||| ||| || | ||||| | ||||| || Sbjct 354 TGCCACCAGACGTTGGGCGAAACTGCTTTCCTTATCAGAGATCCATCTCAACGCCCACTC 413 Query 48338 AGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGAAAGtttttttCATT 48397 ||||||||| | || || || || || ||||||| ||||| | | ||| | || Sbjct 414 AGCCTTCTTGCGGATGCATGGAATAGTGTCGATAGCATCGAAGAGGTACTGTTTCTGCTT 473 Query 48398 GCTATCTTTAACGTAAGTATCTATTAAAAGACTATACATTTCGGAGTGAATATTTTCAAT 48457 ||||| || | ||||| || | | || |||||||||||||| ||||| || || Sbjct 474 TGGCTCTTTCACAAATGTATCAATGAGCAAGCTGTACATTTCGGAGTGGATATTCTCCAT 533 Query 48458 TGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATCTGTACCTCCGTACAAAATCG 48517 ||||| || || ||||| |||| || |||| | || ||||| | |||| Sbjct 534 CATGATCTGGAAACCATAAAAGCATCGAGCCTCTGGTACTTGCACCTCACCCGAGAATCT 593 Query 48518 TTCAGCCAAATTCTCATTTACTATTCCATCACTAGCAGCAAAAAATGCTAATACATGTTT 48577 || | | ||||| || || || || ||| ||||| || || || | || ||| Sbjct 594 CTCGACAAGGTTCTCGTTGACAATACCGTCAGAGGCAGCGAAGAAAGCAAGGACGTGTGA 653 Query 48578 AATAAAATATTTTTCGTTGGAAGTCAGTTTATT---CCAGTCATTGATATCTTTTGATAT 48634 ||||| ||| | || | | | || || || |||||| | ||||||||||| | Sbjct 654 GATAAAGTATCTCTCATCGTCGTTGAGCTTGTTGTGCCAGTCGTGCATATCTTTTGAGAG 713 Query 48635 ATCTACTTCTTC 48646 ||| || ||||| Sbjct 714 ATCCACCTCTTC 725 >seq57685 Length=1792 Score = 127 bits (140), Expect = 3e-24 Identities = 401/618 (65%), Gaps = 4/618 (1%) Strand=Plus/Plus Query 77913 GTATATAGCCGTTCAAATTCATCTCCCCAAACATCATCCAATCCAGGGCATTCATTTGGG 77972 ||| | |||| || || ||||| || | || ||| | | |||||||| || || ||| Sbjct 1176 GTAGAGAGCC--TCGAACTCATCGCCATAGACGTCAGCAAGACCAGGGCACTCGTTCGGG 1233 Query 77973 CACATCAATGACCAGTCACCATCTTCCTTAACTCGTTTCATAAAGAGATCAGGTATCCAT 78032 ||||||| | ||| || |||| | || || || ||||| || ||||| || ||||| Sbjct 1234 CACATCAGCGTCCAATCTCCATTCTGCTCGACACGCTTCATGAAAAGATCGGGAATCCAG 1293 Query 78033 AGAGCAATAAATAGATCTCGGGTTCTATGTTCTTCATTTCCTGTATTCTTTTTAAGATCG 78092 || ||| || || || || | | || || || || ||||| |||||| Sbjct 1294 AGTGCATAGAAGAGGTCACGAGCACGGACCTCCTCCTTGCCGTGGTTCTTGCGAAGATCC 1353 Query 78093 AGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATATTGCCATAACTCCAGGTCGT 78152 || || | | | ||||| |||||||| || || || || || | | || || || Sbjct 1354 AGGAAGGCGAAGACATCAGCGTGCCATGGCTCGAGGTACATGGCAAAGGCGCCGGGACGC 1413 Query 78153 TTATTACCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATA 78212 || || || || || || | ||| | || || || || | || | | |||||| | Sbjct 1414 TTGTTGCCACCTTGGTCGACATAACGAGCAGTATTGTTGAAGACACGAAGCATTGGTACC 1473 Query 78213 ATACCGTTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTA 78272 | ||| || ||||| ||||| || || ||| || ||| | || || || | Sbjct 1474 AGACCATTGGATGTGCCATTGGTGCCGCCAATGTACGAACCAGTCGCACGGATGCGGTGA 1533 Query 78273 ATGGATATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCG 78332 | | | ||| || || || || |||| || || | ||||| || | ||||||| Sbjct 1534 ACGTTGAACCCGATGCCGCCAGCATTCTTCGAGATCATTGCGCAGGTCTTGAGTGTATCG 1593 Query 78333 TAGATACCCTCTATACTGTCATCCATCATGTTAAGAAGAAAACAGCTAGACATTTGATGA 78392 ||||||||||| || ||||| ||| | | || | || || ||| | || || | Sbjct 1594 TAGATACCCTCGATGCTGTCCTCCTTGACGTCGATGAGGAAGCAGGAGGCCAGCTGTGGG 1653 Query 78393 TGAACAGTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGA-AAG 78451 | ||| || ||| | || | |||||| || || ||||| || | || | || | | Sbjct 1654 TTGGGAGTACCAGCACTGAAGAGTGTCGGCGAAGCGTGCGTGAAGTACTTGTTTGACATG 1713 Query 78452 TAGATTGTATGTTTCAATAGCTGATTCTATGTCCCATTGATGAATTCCTACCGCTACACG 78511 ||| ||||| || || || || | || || ||| |||||| || || || ||||| Sbjct 1714 TAG-TTGTAGGTCTCGATGGCAGCCTCGATATCCTCGCCATGAATGCCAACGGCGACACG 1772 Query 78512 CATCAACATATGCTGAGG 78529 ||| | ||| |||||||| Sbjct 1773 CATGATCATCTGCTGAGG 1790 >seq11270 Length=18388 Score = 120 bits (132), Expect = 4e-22 Identities = 232/340 (68%), Gaps = 2/340 (1%) Strand=Plus/Plus Query 48141 CATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGA 48200 || || ||||| || || || ||||| |||| || || ||||| || || || | Sbjct 5488 CACGCGAAATCGCAGTGGAGGCCTTCGTCTCGCGAGATCAACTCGTTGGAGAAGGTTAAC 5547 Query 48201 CCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGAT-CCAGAAAAGAA 48259 |||||||||| || || ||||| ||||||||||| | ||| ||| | || || ||||| Sbjct 5548 CCGGGCATTAACCCGCGCTTTTTTAGCCAAAATATCG-CGCAGAAGCTACCGGAGAAGAA 5606 Query 48260 TATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACTGGCTTCGTTGTGTAT 48319 |||||||| ||| || || ||| | || ||||| || | || || || || Sbjct 5607 AATGCCTTCGACGCAGGCGAAAGCGATGAGCCTCTCGGCGAACGATTCTCCGCCGTCGAT 5666 Query 48320 CCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAA 48379 |||||| | ||||| || ||||||||| || ||||| | || || || || | || Sbjct 5667 CCACCGCAGGGCCCACTCGGCCTTCTTCGCCACGCAAGGAACGGTCTCCATCGCGTGGAA 5726 Query 48380 GAGAAAGtttttttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATACATTTC 48439 || ||| || || || || | || || || | || ||||| |||||||| Sbjct 5727 CAGCCGGTTCTTCTCGGCCGAGTCCTTGATATAGGTCTCGAGCAAGAGACTGTACATTTC 5786 Query 48440 GGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAA 48479 ||||| ||||| || || || ||||| || || || ||| Sbjct 5787 AGAGTGGATATTCTCGATCGCAATCTGGAAGCCATAGAAA 5826 >seq588 Length=109198 Score = 96.9 bits (106), Expect = 5e-15 Identities = 117/157 (75%), Gaps = 2/157 (1%) Strand=Plus/Minus Query 77897 CTCTCTTTCATATTGAGTATATAGCCGTTCAAATTCATCTCCCCAAACATCATCCAATCC 77956 |||||||||||| || || || | ||||||| || |||||| ||| |||| || Sbjct 13713 CTCTCTTTCATACTGGGTGTACAATTTCTCAAATTTGTCACCCCAACAATCTGCCAAACC 13654 Query 77957 AGGGCATTCATTTGGGCACATCAATGACCAGTCACCATCTTCCTT-AACTCGTTTCATAA 78015 || | ||||| ||||| | ||||||||| || |||| | | || ||||| || ||| | Sbjct 13653 TGGAGACTCATTAGGGCAAAACAATGACCATTCTCCAT-TGCTTTGAACTCTTTCCATGA 13595 Query 78016 AGAGATCAGGTATCCATAGAGCAATAAATAGATCTCG 78052 |||||||||| | ||| |||||| ||| ||||| || Sbjct 13594 AGAGATCAGGAACCCAAAGAGCATAAAACAGATCACG 13558 Score = 95.1 bits (104), Expect = 2e-14 Identities = 157/224 (70%), Gaps = 2/224 (1%) Strand=Plus/Minus Query 78158 ACCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 78217 ||| || ||||| | ||||| || || | ||| | || | | |||||||| ||| || Sbjct 13263 ACCCCCTTGATCAACATATCGTGCAGTATCATTGAATACCCGTAGCATTGGAACAATGCC 13204 Query 78218 GTTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTAATGGA 78277 |||||||| |||||||||||| ||||||||| || | || |||||||| || || Sbjct 13203 ATTAGATGTCCCATTTGTTCCACGAATATAACTGCCTGTAGCACGAATATTGTGAACTGA 13144 Query 78278 TATCCCTATTCCTCCTGCCATCTTAGAT-ATTAGAGCGCAACGTTTCAATGTATCGTAGA 78336 | || |||||||| | || || | | || | ||| || ||| || || || || | Sbjct 13143 GACACCAATTCCTCCAG-CAGATTTGCTAATGATAGCACACTCTTTTAAAGTCTCATATA 13085 Query 78337 TACCCTCTATACTGTCATCCATCATGTTAAGAAGAAAACAGCTA 78380 | || || ||||| ||||| ||||| | ||| || || ||| Sbjct 13084 TGCCTTCAATACTATCATCTTTCATGCACACAAGGAAGCAACTA 13041 Score = 87.8 bits (96), Expect = 2e-12 Identities = 140/199 (70%), Gaps = 4/199 (2%) Strand=Plus/Minus Query 77145 ACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGATTCATTGTTTCCCAAAATT 77204 ||||||||| |||||||||| ||||||||||| | | ||||||||||| | ||| Sbjct 15452 ACTCTACGACTGTAAATATTGGAAGTATATGGTTCAAAGCACTCATTGTTTCCAAGAATC 15393 Query 77205 TGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCAATAAACTATTTCTGAGACCATGTGTT 77264 || ||| |||||||||||||| || || | | | |||||| |||| | || Sbjct 15392 TGGCTAGTGGAAGCAGTTGGCATGGGAGCTATAAGAAGTGAATTTCTAGCACCA--TTTT 15335 Query 77265 CTGATTTTATCT--TTTAGATATTTCCAATCCCAAAGATCTGAAGGTACAACATCCCAAA 77322 ||| | |||| | ||| ||||||||||| |||||||| ||| ||| |||| | Sbjct 15334 TGGATATCATCTCCCTAAGAGCATTCCAATCCCACAGATCTGAGGGTGTCACACCCCACA 15275 Query 77323 GATCGTATTGTAGAATTCC 77341 || || |||||||| Sbjct 15274 TGTCTGGCTGAAGAATTCC 15256 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 693508798620960