Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Castanea_20mollissima_20[genbank_20GCA_5F000763605.1_202014-10-06] 133,589 sequences; 833,240,550 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq99200 156 6e-33 seq78534 145 1e-29 seq588 123 4e-23 seq11270 105 1e-17 >seq99200 Length=725 Score = 156 bits (172), Expect = 6e-33 Identities = 332/492 (67%), Gaps = 8/492 (2%) Strand=Plus/Plus Query 46651 CCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTT 46710 |||||||| | | || | ||||| || ||||| || |||||||| || || | ||| Sbjct 235 CCTTCATCACGAGAGATCAGCTCGTTGGAGAATGTCAGACCAGGCATGAGACCTCTCTTC 294 Query 46711 TTGAGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAAT 46770 |||||||| || || | |||||||| || || ||||| ||||| || || || |||||| Sbjct 295 TTGAGCCAGAAAATGGAGGCGAAAGACCCGGAGAAGAAGATGCCCTCAACGGCGGCGAAT 354 Query 46771 GCGACAAGTCTCTCTCCGTAACTGGCATCATTATGA---ATCCACCTTTGAGCCCAATCA 46827 || || || | | || ||||| || |||| | ||||| || ||||| ||| Sbjct 355 GCCACCAGACGTTGGGCGAAACTGCTTTCCTTATCAGAGATCCATCTCAACGCCCACTCA 414 Query 46828 GCCTTTTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGAAAGtttttttCATCA 46887 ||||| || | || || || || || ||||||| ||||| | | ||| | | Sbjct 415 GCCTTCTTGCGGATGCATGGAATAGTGTCGATAGCATCGAAGAGGTACTGTTTCTGCTTT 474 Query 46888 CTATCTTTAACATATGTATCTATTAAAAGACTATACATTTCTGAATGAATGTTTTCAATA 46947 ||||| ||| ||||||| || | | || |||||||| || || || || || || Sbjct 475 GGCTCTTTCACAAATGTATCAATGAGCAAGCTGTACATTTCGGAGTGGATATTCTCCATC 534 Query 46948 GCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATCTGTACCTCTGTACAAAATCGT 47007 ||||| || || ||||| |||| || || | | || ||||| | |||| Sbjct 535 ATGATCTGGAAACCATAAAAGCATCGAGCCTCTGGTACTTGCACCTCACCCGAGAATCTC 594 Query 47008 TCAGACAAA-TTCTCATTCACTATTCCATCACTAGCAGCAAAAAATGCCAATACATGTTT 47066 || ||||| ||||| || || || || ||| ||||| || || || | || ||| Sbjct 595 TC-GACAAGGTTCTCGTTGACAATACCGTCAGAGGCAGCGAAGAAAGCAAGGACGTGTGA 653 Query 47067 AATAAAATATTTTTCATCGGTAGTCAGTTTATT---CCAGTCATTGATATCTTTTGATAT 47123 ||||| ||| | |||||| | || || || |||||| | ||||||||||| | Sbjct 654 GATAAAGTATCTCTCATCGTCGTTGAGCTTGTTGTGCCAGTCGTGCATATCTTTTGAGAG 713 Query 47124 ATCTACTTCTTC 47135 ||| || ||||| Sbjct 714 ATCCACCTCTTC 725 >seq78534 Length=1057 Score = 145 bits (160), Expect = 1e-29 Identities = 371/559 (66%), Gaps = 8/559 (1%) Strand=Plus/Minus Query 76279 AGATGCTAGATTACAAACGGCTACCTCATTAGCATTGGCATATTGTATTATCTCCGTGCA 76338 ||| || ||||| ||||| || || |||| | | | ||| | || || || ||||| Sbjct 652 AGACGCGAGATTGCAAACTGCGACTTCATCTGGAGCAGTATACTCAATGATTTCGGTGCA 593 Query 76339 TAGATTACTACACTTGATAGTTCCAAGATTTTGTTGGTTGCTCTTTTTGTTACATGAGTC 76398 || || ||||||| ||||| || || | |||||||||||| ||| || | || Sbjct 592 GAGGTTGGATGACTTGATCGTTCCCAGGTTCTTTTGGTTGCTCTTGCGGTTGCAGGCATC 533 Query 76399 CTTATAAAGAACAAACGGAGTTCCAGTTTCAATCTGTGATTCGATAATAGATTTCCAGAC 76458 || || || | || ||| | ||||| ||| |||| | || || || | | ||| | Sbjct 532 TTTGTACAGCATGAATGGATTGCCAGTCTCAGTCTGAGCCTCAATGATGGCATACCACA- 474 Query 76459 GACTCT-AGCTTTTATTATAGATTTGTATCGCTTCTCT--CTT-TCATATTGTGTATATA 76514 | ||| ||| || ||| | | | | ||| || ||| ||||||| || | | Sbjct 473 GTTTCTGAGCCTTAATTGTC---TGGCGGCCCTTTCCTGCCTTCTCATATTTGGTGAACA 417 Query 76515 ACCGTTCAAATTCATCTCCCCAAACATCATCCAAACCAGGACATTCATTCGGACACATCA 76574 | || ||||| || || | ||| |||||||||||||||||| |||||||||| Sbjct 416 AGGCCTCGAATTCGTCGCCGTAGCAGTCAGACAAACCAGGACATTCATTGGGACACATCA 357 Query 76575 ATGACCACTCACCATCTTCCTTAACCCGTTTCATAAAGAGATCAGGTATCCATAGAGCAA 76634 || ||| || ||| | | || || ||||| || || ||||| ||||| ||||| Sbjct 356 GTGTCCAGTCTGCATTCTTTTCTACTCGCTTCATGAATAGGTCAGGAATCCAGAGAGCGT 297 Query 76635 TAAATAGATCTCGGGTTCTACGTTCTTCATTTCCTGTATTCTTTTTAAGATCTAGGAACT 76694 || ||||||| || ||| |||||| || || |||||| | | | || ||| Sbjct 296 AGAAGAGATCTCTGGCTCTGACTTCTTCTTTGCCGTGGTTCTTTCTCAAGTTGAGCCACT 237 Query 76695 CCATAATATCAGAATGCCATGGTTCTAGATATATCGCCATAACACCCGGTCGTTTATTAC 76754 | | | ||||| |||||||| || || || || || | |||| |||| || || | Sbjct 236 CGAATACATCAGCGTGCCATGGCTCAAGGTAAATGGCGAAGGCACCTGGTCTCTTGTTGC 177 Query 76755 CTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCCGT 76814 | || ||||| | || | |||||||| | | | |||| || ||| || | | |||| Sbjct 176 CGCCTTGATCGACGTACCGAGCAGTGTTGTCAAAGACTCGCAGCATAGGCGTCAGACCGT 117 Query 76815 TAGATGTACCATTTGTTCC 76833 | || || || ||||| || Sbjct 116 TCGAAGTGCCGTTTGTACC 98 >seq588 Length=109198 Score = 123 bits (136), Expect = 4e-23 Identities = 161/223 (72%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 76753 ACCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCC 76812 ||| || ||||| | ||||| ||||| | ||| | || | | |||||||| |||||| Sbjct 13263 ACCCCCTTGATCAACATATCGTGCAGTATCATTGAATACCCGTAGCATTGGAACAATGCC 13204 Query 76813 GTTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGA 76872 |||||||| |||||||||||| ||||||||| || ||||||||||| || || Sbjct 13203 ATTAGATGTCCCATTTGTTCCACGAATATAACTGCCTGTAGCACGAATATTGTGAACTGA 13144 Query 76873 TAGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGAT 76932 | || |||||||| || ||| || | |||||| ||| || || ||||| || Sbjct 13143 GACACCAATTCCTCCAGCAGATTTGCTAATGATAGCACACTCTTTTAAAGTCTCATATAT 13084 Query 76933 GCCCTCTATACTATCATCCATCATGTTAAGAAGAAAACAGCTA 76975 ||| || ||||||||||| ||||| | ||| || || ||| Sbjct 13083 GCCTTCAATACTATCATCTTTCATGCACACAAGGAAGCAACTA 13041 Score = 107 bits (118), Expect = 3e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 76994 GTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATTG 77053 || |||||||| || | || ||||| |||||||||||||| | ||| | | || | Sbjct 12940 GTCCCTGCATTGAAAAGAGTGGGAGAAGCATGAGTGAACCACCGCTGAGACATCATATGG 12881 Query 77054 TATGTTTCAATAACTGCTTCTATATC-CCATTGATGAATTCCTACAGCGACACGCATCAA 77112 ||||||| ||||||| || ||||| | ||| |||||||| |||| || | ||| || Sbjct 12880 TATGTTTTGATAACTGAATCAATATCATCCTTG-TGAATTCCAACAGAAACCCTCATTAA 12822 Query 77113 CATATGCTGAGGTCGTTCTACAGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAA 77172 ||| |||||||| | ||||||| ||| | | ||||| | ||| || | || | Sbjct 12821 CATGTGCTGAGGCCTTTCTACAACCTTCCCTTGGACCTTCAATAGGTAAGACCTCTCAAG 12762 Query 77173 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAAT 77220 ||||| |||||||| || | || ||||||||| || || || || Sbjct 12761 GGTTTTGAAACCAAAGTAATCATAGTCAAAGTCTCTATCATAGATGAT 12714 Score = 100 bits (110), Expect = 4e-16 Identities = 118/157 (75%), Gaps = 2/157 (1%) Strand=Plus/Minus Query 76492 CTCTCTTTCATATTGTGTATATAACCGTTCAAATTCATCTCCCCAAACATCATCCAAACC 76551 |||||||||||| || || || || ||||||| || |||||| ||| ||||||| Sbjct 13713 CTCTCTTTCATACTGGGTGTACAATTTCTCAAATTTGTCACCCCAACAATCTGCCAAACC 13654 Query 76552 AGGACATTCATTCGGACACATCAATGACCACTCACCATCTTCCTT-AACCCGTTTCATAA 76610 ||| | ||||| || || | ||||||||| || |||| | | || ||| | || ||| | Sbjct 13653 TGGAGACTCATTAGGGCAAAACAATGACCATTCTCCAT-TGCTTTGAACTCTTTCCATGA 13595 Query 76611 AGAGATCAGGTATCCATAGAGCAATAAATAGATCTCG 76647 |||||||||| | ||| |||||| ||| ||||| || Sbjct 13594 AGAGATCAGGAACCCAAAGAGCATAAAACAGATCACG 13558 >seq11270 Length=18388 Score = 105 bits (116), Expect = 1e-17 Identities = 229/340 (67%), Gaps = 2/340 (1%) Strand=Plus/Plus Query 46630 CATGCAAAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGC 46689 || || ||||| || || |||||||| |||| || || ||||| || || || | | Sbjct 5488 CACGCGAAATCGCAGTGGAGGCCTTCGTCTCGCGAGATCAACTCGTTGGAGAAGGTTAAC 5547 Query 46690 CCAGGCATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGAT-CCAGAAAAGAA 46748 || ||||||| || |||||||| ||||||||||| | ||| ||| | || || ||||| Sbjct 5548 CCGGGCATTAACCCGCGCTTTTTTAGCCAAAATATCG-CGCAGAAGCTACCGGAGAAGAA 5606 Query 46749 TATGCCTTCTACAGCCGCGAATGCGACAAGTCTCTCTCCGTAACTGGCATCATTATGAAT 46808 |||||||| || ||||| |||| || ||||| || | | | | || Sbjct 5607 AATGCCTTCGACGCAGGCGAAAGCGATGAGCCTCTCGGCGAACGATTCTCCGCCGTCGAT 5666 Query 46809 CCACCTTTGAGCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCTATAGCATTAAA 46868 ||||| | ||||| || ||||| ||| || ||||| | || || || || | || Sbjct 5667 CCACCGCAGGGCCCACTCGGCCTTCTTCGCCACGCAAGGAACGGTCTCCATCGCGTGGAA 5726 Query 46869 GAGAAAGtttttttCATCACTATCTTTAACATATGTATCTATTAAAAGACTATACATTTC 46928 || ||| || || | || || | ||| || || | || ||||| |||||||| Sbjct 5727 CAGCCGGTTCTTCTCGGCCGAGTCCTTGATATAGGTCTCGAGCAAGAGACTGTACATTTC 5786 Query 46929 TGAATGAATGTTTTCAATAGCCATCTGAAATCCGTAAAAA 46968 || || || || || || || ||||| || || || ||| Sbjct 5787 AGAGTGGATATTCTCGATCGCAATCTGGAAGCCATAGAAA 5826 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 711743897580480