Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Castanea_20mollissima_20[genbank_20GCA_5F000763605.1_202014-10-06]
133,589 sequences; 833,240,550 total letters
Query= NC_031058.1
Length=58566
Score E
Sequences producing significant alignments: (Bits) Value
seq112765 159 1e-34
seq29437 93.3 2e-14
seq69607 86.0 2e-12
>seq112765
Length=571
Score = 159 bits (176), Expect = 1e-34
Identities = 309/447 (69%), Gaps = 8/447 (2%)
Strand=Plus/Plus
Query 30980 CCCTGCTGGCAGATGCCACGGGATTCCATGCACATGTGTCG-CGCCTTAATGACCACACC 31038
||| || || |||||| ||| |||||||||||| || || | | || |||||| ||
Sbjct 24 CCCGGCGTGCGGATGCCGCGGCTTTCCATGCACATATGGCGGCAGCGTAC-GACCACGCC 82
Query 31039 GACGCCCTT-GGCTTCCAGGTGCTCGAA-CAGTGCGTCCGCGATCTGGTCTGTGAGCCGT 31096
||| | || |||| || | || | | |||||||| || |||||| || | ||
Sbjct 83 GACTGCTTTCGGCT--CAAGCACTTGCATCAGTGCGTTGGCAATCTGGATCGTCATGCGC 140
Query 31097 TCCTGCACTTGCAGGCGGCGAGCATACATGTCCGCCAGGCGGGACAGCTTGCTCAGGCCC 31156
|||||||| |||||||| | ||| ||||| ||||||||| |||||| ||||||
Sbjct 141 TCCTGCACCTGCAGGCGCTTCGAATAAATGTCGACCAGGCGGGTCAGCTTCGACAGGCCG 200
Query 31157 ACGATACGACCGTTCGGAATGTAGCTGATCGTGACCGTGCCGAAGATCGGCGCGAGGTGA 31216
|| || || || || | || | |||||| | ||||||| | |||||| |||||
Sbjct 201 ACAATCTTTCCCTTAGGCAGATAACCAATCGTGGCTTTGCCGAAAAACGGCGCCAGGTGG 260
Query 31217 TGCTCGCAATGTGAGTAGATGGGGATGTCGCGCACCGTCACCATCTGGTCATGCTTCTCC 31276
|| |||||||| ||||| |||||| ||||||| | || || || || | ||
Sbjct 261 TGTTCGCAATGGCTGTAGACAGGGATGCCGCGCACGACGATCAACTCGTTATATTCTTCG 320
Query 31277 GCACCGTCTTCGAACACCTTCAGGATGGCCTTCGGATCCTTGCCGTAACCGCCGCACCAG 31336
|| || ||||| ||| |||||| | | |||||||| ||| || || | ||||
Sbjct 321 GCGCCATCTTCAAACGCCTTCAATACTTCGACCGGATCCTGGCCATAGCCCGAGGTCCAG 380
Query 31337 TGGCGCCAGGCCTTAGCGACGCGATGCGGAGTCTCGAGCAGACCTTCCCGGGCAGGATCG 31396
|| ||| ||||| ||||| || ||| || ||| ||||||| ||| | || ||
Sbjct 381 TGTTCCCAAGCCTTGGCGACACGCGCCGGGGTTTCGTGCAGACCGGGGCGGTCGGGGTCT 440
Query 31397 TCCCCGA-CGTACTGGAGCAGACGGCG 31422
|| |||| ||| | |||||||||||
Sbjct 441 TCGCCGATCGT-CGCCAGCAGACGGCG 466
>seq29437
Length=3691
Score = 93.3 bits (102), Expect = 2e-14
Identities = 228/338 (67%), Gaps = 12/338 (4%)
Strand=Plus/Minus
Query 31071 CGTCCGCGATCTGGTCTGTGAGCCGTTCCTGCACTTGCAGGCGGCGAGCATACATGTCCG 31130
|||| ||||||||| | || | | |||||| ||||||||||| || | ||||
Sbjct 3119 CGTCGGCGATCTGGGCGGTCATCGTCTCCTGCGTCTGCAGGCGGCGGGCGAAGGTGTCGA 3060
Query 31131 CCAGGCGGGACAGCTTGCTCAGGCCCACGATACGACCGT--TCGGAATGTAGCTGATCGT 31188
||| ||||| ||||| |||||| || | || || | ||||| ||| ||| ||
Sbjct 3059 CCACGCGGGCGAGCTTCGACAGGCCGACCA--CGCCCTTGGTCGGATAATAGGCGAT-GT 3003
Query 31189 GACCGTGCCGAA-GATCGGCGCGAGGTGATGCTCGCAATGTGAGTAGATGGGGATGTCGC 31247
| || ||| | || |||| | | ||| ||||||||||| ||||||| ||||||||||
Sbjct 3002 GGGCGAGCCCCATGAACGGCACCATGTGGTGCTCGCAATGGGAGTAGAACGGGATGTCGC 2943
Query 31248 GCACCGTCACCATCTGGTCATGCTTCTCCGCACCGTCTTCGAACAC---CTTCAGGATGG 31304
||||| ||| || | || ||| ||| || ||||| || | ||| | ||
Sbjct 2942 GCACCAGCACGATATCCGAATAGCCCTC--GACC-TCCTCGAAGACGCGCGCCAGCAGGG 2886
Query 31305 CCTTCGGATCCTTGCCGTAACCGCCGCACCAGTGGCGCCAGGCCTTAGCGACGCGATGCG 31364
||| | ||| | |||| |||||| || || | | ||||| | || || ||
Sbjct 2885 CCTCGGCGTCCATCTCGTAGCCGCCGAACAGCTGTCCGAACGCCTTGGTAACCCGGGCCG 2826
Query 31365 GAGTCTCGAGCAGACCTTCCCGGGCAGGATCGTCCCCG 31402
| || ||| |||| || || |||| |||||||| |||
Sbjct 2825 GGGTGTCGCGCAGGCCCTCGCGGGTCGGATCGTCGCCG 2788
>seq69607
Length=1286
Score = 86.0 bits (94), Expect = 2e-12
Identities = 91/120 (76%), Gaps = 0/120 (0%)
Strand=Plus/Plus
Query 43515 TCGTTGATGGTGGCGGTGCGGTGGCGCACGAACTGCCGAGCGACGAAGATAGGCATCTTC 43574
||||||| | ||| |||||||||||| | ||||||| || |||||||| |||| ||||
Sbjct 903 TCGTTGACGCTGGAGGTGCGGTGGCGGATCCACTGCCGGGCCACGAAGATCGGCAGCTTC 962
Query 43575 ATTTCCAGCCAGATTTCCACCATCTCGAACGGGCTGGTGTGCCAGTTGCGCATCAGGTAG 43634
| | |||| ||| ||||||||| || ||| ||||||| ||||||||||||
Sbjct 963 ACGTGCAGCTTGATCGAGCACATCTCGAAGGGCGTGGAATGCCAGTGCCGCATCAGGTAG 1022
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 186992489514304
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |