Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Castanea_20mollissima_20[genbank_20GCA_5F000763605.1_202014-10-06] 133,589 sequences; 833,240,550 total letters Query= NC_031058.1 Length=58566 Score E Sequences producing significant alignments: (Bits) Value seq112765 159 1e-34 seq29437 93.3 2e-14 seq69607 86.0 2e-12 >seq112765 Length=571 Score = 159 bits (176), Expect = 1e-34 Identities = 309/447 (69%), Gaps = 8/447 (2%) Strand=Plus/Plus Query 30980 CCCTGCTGGCAGATGCCACGGGATTCCATGCACATGTGTCG-CGCCTTAATGACCACACC 31038 ||| || || |||||| ||| |||||||||||| || || | | || |||||| || Sbjct 24 CCCGGCGTGCGGATGCCGCGGCTTTCCATGCACATATGGCGGCAGCGTAC-GACCACGCC 82 Query 31039 GACGCCCTT-GGCTTCCAGGTGCTCGAA-CAGTGCGTCCGCGATCTGGTCTGTGAGCCGT 31096 ||| | || |||| || | || | | |||||||| || |||||| || | || Sbjct 83 GACTGCTTTCGGCT--CAAGCACTTGCATCAGTGCGTTGGCAATCTGGATCGTCATGCGC 140 Query 31097 TCCTGCACTTGCAGGCGGCGAGCATACATGTCCGCCAGGCGGGACAGCTTGCTCAGGCCC 31156 |||||||| |||||||| | ||| ||||| ||||||||| |||||| |||||| Sbjct 141 TCCTGCACCTGCAGGCGCTTCGAATAAATGTCGACCAGGCGGGTCAGCTTCGACAGGCCG 200 Query 31157 ACGATACGACCGTTCGGAATGTAGCTGATCGTGACCGTGCCGAAGATCGGCGCGAGGTGA 31216 || || || || || | || | |||||| | ||||||| | |||||| ||||| Sbjct 201 ACAATCTTTCCCTTAGGCAGATAACCAATCGTGGCTTTGCCGAAAAACGGCGCCAGGTGG 260 Query 31217 TGCTCGCAATGTGAGTAGATGGGGATGTCGCGCACCGTCACCATCTGGTCATGCTTCTCC 31276 || |||||||| ||||| |||||| ||||||| | || || || || | || Sbjct 261 TGTTCGCAATGGCTGTAGACAGGGATGCCGCGCACGACGATCAACTCGTTATATTCTTCG 320 Query 31277 GCACCGTCTTCGAACACCTTCAGGATGGCCTTCGGATCCTTGCCGTAACCGCCGCACCAG 31336 || || ||||| ||| |||||| | | |||||||| ||| || || | |||| Sbjct 321 GCGCCATCTTCAAACGCCTTCAATACTTCGACCGGATCCTGGCCATAGCCCGAGGTCCAG 380 Query 31337 TGGCGCCAGGCCTTAGCGACGCGATGCGGAGTCTCGAGCAGACCTTCCCGGGCAGGATCG 31396 || ||| ||||| ||||| || ||| || ||| ||||||| ||| | || || Sbjct 381 TGTTCCCAAGCCTTGGCGACACGCGCCGGGGTTTCGTGCAGACCGGGGCGGTCGGGGTCT 440 Query 31397 TCCCCGA-CGTACTGGAGCAGACGGCG 31422 || |||| ||| | ||||||||||| Sbjct 441 TCGCCGATCGT-CGCCAGCAGACGGCG 466 >seq29437 Length=3691 Score = 93.3 bits (102), Expect = 2e-14 Identities = 228/338 (67%), Gaps = 12/338 (4%) Strand=Plus/Minus Query 31071 CGTCCGCGATCTGGTCTGTGAGCCGTTCCTGCACTTGCAGGCGGCGAGCATACATGTCCG 31130 |||| ||||||||| | || | | |||||| ||||||||||| || | |||| Sbjct 3119 CGTCGGCGATCTGGGCGGTCATCGTCTCCTGCGTCTGCAGGCGGCGGGCGAAGGTGTCGA 3060 Query 31131 CCAGGCGGGACAGCTTGCTCAGGCCCACGATACGACCGT--TCGGAATGTAGCTGATCGT 31188 ||| ||||| ||||| |||||| || | || || | ||||| ||| ||| || Sbjct 3059 CCACGCGGGCGAGCTTCGACAGGCCGACCA--CGCCCTTGGTCGGATAATAGGCGAT-GT 3003 Query 31189 GACCGTGCCGAA-GATCGGCGCGAGGTGATGCTCGCAATGTGAGTAGATGGGGATGTCGC 31247 | || ||| | || |||| | | ||| ||||||||||| ||||||| |||||||||| Sbjct 3002 GGGCGAGCCCCATGAACGGCACCATGTGGTGCTCGCAATGGGAGTAGAACGGGATGTCGC 2943 Query 31248 GCACCGTCACCATCTGGTCATGCTTCTCCGCACCGTCTTCGAACAC---CTTCAGGATGG 31304 ||||| ||| || | || ||| ||| || ||||| || | ||| | || Sbjct 2942 GCACCAGCACGATATCCGAATAGCCCTC--GACC-TCCTCGAAGACGCGCGCCAGCAGGG 2886 Query 31305 CCTTCGGATCCTTGCCGTAACCGCCGCACCAGTGGCGCCAGGCCTTAGCGACGCGATGCG 31364 ||| | ||| | |||| |||||| || || | | ||||| | || || || Sbjct 2885 CCTCGGCGTCCATCTCGTAGCCGCCGAACAGCTGTCCGAACGCCTTGGTAACCCGGGCCG 2826 Query 31365 GAGTCTCGAGCAGACCTTCCCGGGCAGGATCGTCCCCG 31402 | || ||| |||| || || |||| |||||||| ||| Sbjct 2825 GGGTGTCGCGCAGGCCCTCGCGGGTCGGATCGTCGCCG 2788 >seq69607 Length=1286 Score = 86.0 bits (94), Expect = 2e-12 Identities = 91/120 (76%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 43515 TCGTTGATGGTGGCGGTGCGGTGGCGCACGAACTGCCGAGCGACGAAGATAGGCATCTTC 43574 ||||||| | ||| |||||||||||| | ||||||| || |||||||| |||| |||| Sbjct 903 TCGTTGACGCTGGAGGTGCGGTGGCGGATCCACTGCCGGGCCACGAAGATCGGCAGCTTC 962 Query 43575 ATTTCCAGCCAGATTTCCACCATCTCGAACGGGCTGGTGTGCCAGTTGCGCATCAGGTAG 43634 | | |||| ||| ||||||||| || ||| ||||||| |||||||||||| Sbjct 963 ACGTGCAGCTTGATCGAGCACATCTCGAAGGGCGTGGAATGCCAGTGCCGCATCAGGTAG 1022 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 186992489514304