Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Castanea_20mollissima_20[genbank_20GCA_5F000763605.1_202014-10-06] 133,589 sequences; 833,240,550 total letters Query= NC_031067.1 Length=52496 Score E Sequences producing significant alignments: (Bits) Value seq81249 113 2e-20 >seq81249 Length=1001 Score = 113 bits (124), Expect = 2e-20 Identities = 199/283 (70%), Gaps = 14/283 (5%) Strand=Plus/Plus Query 41093 GTACAGCCAGGCGATGGAGTCACGAATCTCGAAGCCCGCGTCCTCGATGGCCACGGTCAG 41152 ||| ||||| ||||| ||||| || |||||||| || ||||||||||| | | | || Sbjct 1 GTAGAGCCACGCGATCGAGTCGCGGATCTCGAATCCGGCGTCCTCGATTCCGGCAGCGAG 60 Query 41153 CCGGTGCCAGGTGCGGGAGCCGCCGAAGGCGAGCAGGTGCCCACCGGGCTTGAGGACCCG 41212 ||||| ||||||| | |||||||||||||| || ||||| ||||| ||||||| || Sbjct 61 GCGGTGGAAGGTGCGAGTACCGCCGAAGGCGAGGAGCTGCCCGCCGGGTTTGAGGATGCG 120 Query 41213 CAGACATT--GC-TCCCACATCTCG-AC-----ATCGAAAGCGATGCCTG---AGCTGTC 41260 || || | || ||||| |||| || | ||| || | | ||| || Sbjct 121 GAGGCACTCGGCGGCCCACTGCTCGCACCAGTGCTGGAACTCGCCGGGGGTGTAGCGATC 180 Query 41261 CCACTTCTTGCCCATGAAGGCCAACTCGTAGGGCGGGTCTGTGACGATGGAGTCGACGCT 41320 ||| | |||||||||| | | |||||||||| || ||||||| || || ||||| Sbjct 181 CCAGCCGTGGCCCATGAAGTCGAGGGCGTAGGGCGGATCGGTGACGACGGCGTGCACGCT 240 Query 41321 GGCGTCTTCTAG-TTCGGTGAGTATGTCTCGGCAGTCCCCGAG 41362 | |||| || ||| | ||| | ||| ||||||| ||||| Sbjct 241 GCCGTCGGGCAGCTTCCG-GAGGACGTCGAGGCAGTCGCCGAG 282 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 167599303153044