Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Castanea_20mollissima_20[genbank_20GCA_5F000763605.1_202014-10-06] 133,589 sequences; 833,240,550 total letters Query= NC_031080.1 Length=160985 Score E Sequences producing significant alignments: (Bits) Value seq63089 89.7 5e-13 seq82408 82.4 8e-11 seq67087 82.4 8e-11 >seq63089 Length=1527 Score = 89.7 bits (98), Expect = 5e-13 Identities = 88/114 (77%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 80076 GTTCGCACGCGCTCAGATCGGCAAGCCCTACGTCTGGGGCGCGACCGGACCGGCCAGCTA 80135 || ||| | ||| |||||||||||||||||||||| | ||| |||||||| | ||| Sbjct 241 GTACGCGCTCGCGCAGATCGGCAAGCCCTACGTCTTCGCCGCCGCCGGACCGAACGCCTA 300 Query 80136 CGACTGCTCAGGACTGATGCTCGCGGCCTACCGATCGATCGGCATCGAGATCGG 80189 ||||||||| || |||| |||||| |||||| || |||||| |||||| Sbjct 301 CGACTGCTCGGGGCTGACGCTCGCCGCCTACGCGTCCGCGGGCATCTCGATCGG 354 >seq82408 Length=976 Score = 82.4 bits (90), Expect = 8e-11 Identities = 92/123 (75%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 121530 ACGGCATCTTGGTCTACCAGGAACAGCTGATCCGCACCGCCAAGGAGCTGGCCGGGTTCA 121589 ||||| | | ||||||||||| ||| |||| ||||| || || | ||||| | || Sbjct 892 ACGGCCTGATCGTCTACCAGGAGCAGGTGATGGCGACCGCGCAGAAGGTCGCCGGCTACA 833 Query 121590 CTCCGGGCGAGGCCGAGCGTCTGCGCAAGGGCATCGGCAAGAAGAAGATGGAGATCATCA 121649 | | |||| ||||||| | |||||| || || ||||||||||||| ||||||| || Sbjct 832 CCCTGGGCCAGGCCGACCTGCTGCGCCGGGCGATGGGCAAGAAGAAGAAGGAGATCCTCG 773 Query 121650 ACG 121652 ||| Sbjct 772 ACG 770 >seq67087 Length=1377 Score = 82.4 bits (90), Expect = 8e-11 Identities = 65/78 (83%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 95714 ACGGGGTGTAGTTCAGTTTGGAAGAGCGCTTGGTTTGGGACCAAGATGTCGCAGGTTCGA 95773 ||||| ||||| |||||||| || || | || ||||||| || || ||||||||||||| Sbjct 246 ACGGGATGTAGCGCAGTTTGGTAGCGCTCCTGTTTTGGGAACAGGAGGTCGCAGGTTCGA 305 Query 95774 ATCCTGTCACCCCGACTC 95791 ||||||||| ||||| || Sbjct 306 ATCCTGTCATCCCGATTC 323 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 514163980735800