Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Castanea_20mollissima_20[genbank_20GCA_5F000763605.1_202014-10-06] 133,589 sequences; 833,240,550 total letters Query= NC_031127.1 Length=240761 Score E Sequences producing significant alignments: (Bits) Value seq35939 89.7 8e-13 seq21442 89.7 8e-13 seq14339 89.7 8e-13 >seq35939 Length=2552 Score = 89.7 bits (98), Expect = 8e-13 Identities = 56/59 (95%), Gaps = 1/59 (2%) Strand=Plus/Minus Query 4594 TTAGCTCAGTTGGT-AGAGCGCACCCCTGATAAGGGTGAGGCCACTGGTTCAAGTCCAG 4651 |||||||||||||| |||||||||||||||||||||||||||| ||||||||| ||||| Sbjct 1785 TTAGCTCAGTTGGTTAGAGCGCACCCCTGATAAGGGTGAGGCCGCTGGTTCAAATCCAG 1727 >seq21442 Length=6721 Score = 89.7 bits (98), Expect = 8e-13 Identities = 56/59 (95%), Gaps = 1/59 (2%) Strand=Plus/Minus Query 4594 TTAGCTCAGTTGGT-AGAGCGCACCCCTGATAAGGGTGAGGCCACTGGTTCAAGTCCAG 4651 |||||||||||||| |||||||||||||||||||||||||||| ||||||||| ||||| Sbjct 5932 TTAGCTCAGTTGGTTAGAGCGCACCCCTGATAAGGGTGAGGCCGCTGGTTCAAATCCAG 5874 >seq14339 Length=17663 Score = 89.7 bits (98), Expect = 8e-13 Identities = 62/68 (91%), Gaps = 2/68 (3%) Strand=Plus/Minus Query 4585 AAATGCG-TCTTAGCTCAGTTGGT-AGAGCGCACCCCTGATAAGGGTGAGGCCACTGGTT 4642 ||||| | | |||||||||||||| |||||||||||||||||||||||||||| |||||| Sbjct 5454 AAATGGGCTATTAGCTCAGTTGGTTAGAGCGCACCCCTGATAAGGGTGAGGCCGCTGGTT 5395 Query 4643 CAAGTCCA 4650 ||| |||| Sbjct 5394 CAAATCCA 5387 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 769020892893240