Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Castanea_20mollissima_20[genbank_20GCA_5F000763605.1_202014-10-06]
133,589 sequences; 833,240,550 total letters
Query= NC_031129.1
Length=103445
Score E
Sequences producing significant alignments: (Bits) Value
seq58532 309 2e-79
seq65424 149 4e-31
>seq58532
Length=1173
Score = 309 bits (342), Expect = 2e-79
Identities = 321/413 (78%), Gaps = 7/413 (2%)
Strand=Plus/Plus
Query 58464 TGTTTGCCATTTCATAGGGGAGCCCGCAGAATTCGGAAAAAATCGTACGCTAAGGTTTTC 58523
||| ||||| | || ||||| |||| |||||||||||||| | ||||||||||| |||
Sbjct 767 TGTCTGCCACTACA-AGGGGCGCCCACAGAATTCGGAAAATA--GTACGCTAAGGATTTT 823
Query 58524 CGGGCATCCGTAA-GGGCCGAAACTTCCCGTCTTCCAGTCTGCGGCTCTGCCGCCAGACG 58582
|| |||| | |||| ||| | ||| | | || | |||||||||||||| ||
Sbjct 824 CGCCTGTCCGAAGTGGGCGGAATCGCCCCTTGTCAGCGT-TCCGGCTCTGCCGCCAAACA 882
Query 58583 TAATCGCCGGTTAGGTTGATGTGCTCCCAGCCCAGCGGCGACAGGAATTGCAGCAGCTCG 58642
|| || ||||| |||||||| ||||||||||||| |||||||||| || |||||| ||
Sbjct 883 TAGTC-CCGGTCAGGTTGATATGCTCCCAGCCCA-CGGCGACAGGTATCGCAGCATTCCG 940
Query 58643 CCGTCCACCGGCTTGCCGGCCTCGACCAACCCCTGGGTGGCGCGTTCCAGGTACACCGTG 58702
|||| | ||||||| || ||| ||| |||| || | ||||| ||||| || ||
Sbjct 941 TCGTCGGGCAGCTTGCCCGCTTCGCGCAATGCCTGCGTCCCCCGTTCGAGGTATACGGTA 1000
Query 58703 TTCCACAGCACGATAGCCGCCGTCACCAGGTTGAGGCCGCTGGCCCGGTAGCGCTGCTGC 58762
|||||||||||||| || |||||||||||||| | |||||||| |||||||||||||||
Sbjct 1001 TTCCACAGCACGATGGCGGCCGTCACCAGGTTTAATCCGCTGGCGCGGTAGCGCTGCTGC 1060
Query 58763 TCGAAGCTCCGATCCCTGATTTCCCCAAGGCGGTTGAAGAACACCGCCCTGGCCAGCGAG 58822
|||||||| ||||||| ||| || || || || || ||| |||||||| |||| |
Sbjct 1061 TCGAAGCTTCGATCCCGGATCTCACCGAGTTAGTGGATGAAGACCGCCCTTGCCAAGCCG 1120
Query 58823 TTGCGCGCCTCACCTTTGTTCAGGCCGGCATGCACGCGGCGGCGCAGTTCAAC 58875
|||||||| || || ||||||| || ||||| ||||| ||||| ||||||||
Sbjct 1121 TTGCGCGCTTCGCCCTTGTTCAATCCCGCATGTACGCGCCGGCGAAGTTCAAC 1173
>seq65424
Length=1436
Score = 149 bits (164), Expect = 4e-31
Identities = 238/342 (70%), Gaps = 0/342 (0%)
Strand=Plus/Minus
Query 61619 CGGCCCCGGTACGCGCCACGCTGCTTGGCCAAGGCGATGCCCTCACGCTGCCGCTCGCGG 61678
||||| |||| || |||||||| |||| ||||| ||||| ||||| ||||| |||
Sbjct 556 CGGCCGAGGTAGACGTTGCGCTGCTTCGCCAGCGCGATTCCCTCTCGCTGACGCTCTCGG 497
Query 61679 ATCAGGGCGCGCTCGAACTCAGCGAAGGCCCCCATCACCGACAGCATCAGGTTGGCCATC 61738
|||||| | ||||| |||| || | || || ||||| || | ||| | |||||
Sbjct 496 ATCAGGTCACGCTCAAACTGCGCTACAGCACCGATCACACTCAAAAGCAGATGCGCCATG 437
Query 61739 GGCGAGTCCTCGCCAGTGAACACCAGGCCCTCCTTCAGGAACTCGATGCGCACGCCGCGC 61798
|| ||||| || ||||||||| |||| |||||| | |||| | | | || || |||
Sbjct 436 GGTGAGTCTTCCCCAGTGAACGTCAGGTTCTCCTTTACGAACCGAACGTGGACACCCCGC 377
Query 61799 TGAGTCAGCTTCTGTACCAAGCGACGCAGGTCATCGAGGTTGCGGGCCAGCCGATCCATG 61858
| || | | || | |||||||| || ||||| || || |||||||||||
Sbjct 376 TTTACTAGATCAAGAACTAGCTTGCGCAGGTCGTCAAGGTTCCGCGCAAGCCGATCCATC 317
Query 61859 CTATGCACCACCACTGTATCGCCTTCGCGGACGAAGCTCAGCAGCGCTTCGAGCTGGGGG 61918
||| || | || || || ||||| ||||||| ||||| || |||||| ||
Sbjct 316 GCATGACAGACGATGGTGTCACCCTCGCGTACGAAGCCCAGCATGGCGGTGAGCTGCGGC 257
Query 61919 CGCTGGGTGTCCTTGCCCGATGCCTTGTCGGTGAACACCTTG 61960
|| | ||||| ||||| || |||||||| || || || |||
Sbjct 256 CGGTTCGTGTCTTTGCCAGAAGCCTTGTCCGTAAAGACTTTG 215
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 330360457738774
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |