Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Castanea_20mollissima_20[genbank_20GCA_5F000763605.1_202014-10-06] 133,589 sequences; 833,240,550 total letters Query= NC_031129.1 Length=103445 Score E Sequences producing significant alignments: (Bits) Value seq58532 309 2e-79 seq65424 149 4e-31 >seq58532 Length=1173 Score = 309 bits (342), Expect = 2e-79 Identities = 321/413 (78%), Gaps = 7/413 (2%) Strand=Plus/Plus Query 58464 TGTTTGCCATTTCATAGGGGAGCCCGCAGAATTCGGAAAAAATCGTACGCTAAGGTTTTC 58523 ||| ||||| | || ||||| |||| |||||||||||||| | ||||||||||| ||| Sbjct 767 TGTCTGCCACTACA-AGGGGCGCCCACAGAATTCGGAAAATA--GTACGCTAAGGATTTT 823 Query 58524 CGGGCATCCGTAA-GGGCCGAAACTTCCCGTCTTCCAGTCTGCGGCTCTGCCGCCAGACG 58582 || |||| | |||| ||| | ||| | | || | |||||||||||||| || Sbjct 824 CGCCTGTCCGAAGTGGGCGGAATCGCCCCTTGTCAGCGT-TCCGGCTCTGCCGCCAAACA 882 Query 58583 TAATCGCCGGTTAGGTTGATGTGCTCCCAGCCCAGCGGCGACAGGAATTGCAGCAGCTCG 58642 || || ||||| |||||||| ||||||||||||| |||||||||| || |||||| || Sbjct 883 TAGTC-CCGGTCAGGTTGATATGCTCCCAGCCCA-CGGCGACAGGTATCGCAGCATTCCG 940 Query 58643 CCGTCCACCGGCTTGCCGGCCTCGACCAACCCCTGGGTGGCGCGTTCCAGGTACACCGTG 58702 |||| | ||||||| || ||| ||| |||| || | ||||| ||||| || || Sbjct 941 TCGTCGGGCAGCTTGCCCGCTTCGCGCAATGCCTGCGTCCCCCGTTCGAGGTATACGGTA 1000 Query 58703 TTCCACAGCACGATAGCCGCCGTCACCAGGTTGAGGCCGCTGGCCCGGTAGCGCTGCTGC 58762 |||||||||||||| || |||||||||||||| | |||||||| ||||||||||||||| Sbjct 1001 TTCCACAGCACGATGGCGGCCGTCACCAGGTTTAATCCGCTGGCGCGGTAGCGCTGCTGC 1060 Query 58763 TCGAAGCTCCGATCCCTGATTTCCCCAAGGCGGTTGAAGAACACCGCCCTGGCCAGCGAG 58822 |||||||| ||||||| ||| || || || || || ||| |||||||| |||| | Sbjct 1061 TCGAAGCTTCGATCCCGGATCTCACCGAGTTAGTGGATGAAGACCGCCCTTGCCAAGCCG 1120 Query 58823 TTGCGCGCCTCACCTTTGTTCAGGCCGGCATGCACGCGGCGGCGCAGTTCAAC 58875 |||||||| || || ||||||| || ||||| ||||| ||||| |||||||| Sbjct 1121 TTGCGCGCTTCGCCCTTGTTCAATCCCGCATGTACGCGCCGGCGAAGTTCAAC 1173 >seq65424 Length=1436 Score = 149 bits (164), Expect = 4e-31 Identities = 238/342 (70%), Gaps = 0/342 (0%) Strand=Plus/Minus Query 61619 CGGCCCCGGTACGCGCCACGCTGCTTGGCCAAGGCGATGCCCTCACGCTGCCGCTCGCGG 61678 ||||| |||| || |||||||| |||| ||||| ||||| ||||| ||||| ||| Sbjct 556 CGGCCGAGGTAGACGTTGCGCTGCTTCGCCAGCGCGATTCCCTCTCGCTGACGCTCTCGG 497 Query 61679 ATCAGGGCGCGCTCGAACTCAGCGAAGGCCCCCATCACCGACAGCATCAGGTTGGCCATC 61738 |||||| | ||||| |||| || | || || ||||| || | ||| | ||||| Sbjct 496 ATCAGGTCACGCTCAAACTGCGCTACAGCACCGATCACACTCAAAAGCAGATGCGCCATG 437 Query 61739 GGCGAGTCCTCGCCAGTGAACACCAGGCCCTCCTTCAGGAACTCGATGCGCACGCCGCGC 61798 || ||||| || ||||||||| |||| |||||| | |||| | | | || || ||| Sbjct 436 GGTGAGTCTTCCCCAGTGAACGTCAGGTTCTCCTTTACGAACCGAACGTGGACACCCCGC 377 Query 61799 TGAGTCAGCTTCTGTACCAAGCGACGCAGGTCATCGAGGTTGCGGGCCAGCCGATCCATG 61858 | || | | || | |||||||| || ||||| || || ||||||||||| Sbjct 376 TTTACTAGATCAAGAACTAGCTTGCGCAGGTCGTCAAGGTTCCGCGCAAGCCGATCCATC 317 Query 61859 CTATGCACCACCACTGTATCGCCTTCGCGGACGAAGCTCAGCAGCGCTTCGAGCTGGGGG 61918 ||| || | || || || ||||| ||||||| ||||| || |||||| || Sbjct 316 GCATGACAGACGATGGTGTCACCCTCGCGTACGAAGCCCAGCATGGCGGTGAGCTGCGGC 257 Query 61919 CGCTGGGTGTCCTTGCCCGATGCCTTGTCGGTGAACACCTTG 61960 || | ||||| ||||| || |||||||| || || || ||| Sbjct 256 CGGTTCGTGTCTTTGCCAGAAGCCTTGTCCGTAAAGACTTTG 215 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 330360457738774