Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Castanea_20mollissima_20[genbank_20GCA_5F000763605.1_202014-10-06] 133,589 sequences; 833,240,550 total letters Query= NC_031230.1 Length=98136 Score E Sequences producing significant alignments: (Bits) Value seq78026 154 9e-33 seq37323 127 1e-24 seq82131 104 1e-17 >seq78026 Length=538 Score = 154 bits (170), Expect = 9e-33 Identities = 253/359 (70%), Gaps = 12/359 (3%) Strand=Plus/Plus Query 47041 ATCAACTGCCACCACAACTACACCGAGAACGTCACGATCAACGGCGAGAGGGTGTGGCTG 47100 ||||||||||||||||||||||||| | | | | | | |||| ||| || ||||| Sbjct 55 ATCAACTGCCACCACAACTACACCGCGCAGGAGAAGCACTTCGGCAAGACCGTCTGGCTC 114 Query 47101 ACGCGCAAGGGTGCGATCGACGCCAGCGAGGGCAAGTACGGACTCATCCCCGGCTCCATG 47160 | |||||||| ||||||||||| |||| ||| | ||| || |||||||| || ||| Sbjct 115 TCCCGCAAGGGGGCGATCGACGCGAGCGCCGGCCGGCCCGGGCTGATCCCCGGGTCGATG 174 Query 47161 GGCACCAAGTCGTACGTCGTTGTGGGGCAGGGGAATTC--GTCTGGCCTATACTCGGCA- 47217 || | |||||||||||| | ||||||||| | | ||| || | | | ||| Sbjct 175 GGAGCGGCGTCGTACGTCGTCG-AGGGCAGGGGCAACCCGGTCGCGC---TGCACAGCAG 230 Query 47218 -CCACATGGGGCTGGCCGGAACTTCTCTCGCACCGAGGCTCGCAAGCGGTTCACTGCGGA 47276 || || ||||| || || | | ||| || ||| ||| |||||||| ||||| || Sbjct 231 CCCGCACGGGGCGGGGCGCGAGTACTCGCGGTCCGCGGCGCGCAAGCGCTTCACCCGTGA 290 Query 47277 CGACCTCGCGAAGGCCATGGAGGGCATCGAGTACCGCCACGGT--GAGGAGTGGATCGAC 47334 ||| |||| | |||| |||||||||| || |||| || | || ||||| Sbjct 291 CGATCTCGACGCGCGCATGACCGGCATCGAGTGGGGC--CGGTCGGACGCGTTCCTCGAC 348 Query 47335 GAGATCCCCGCAGCGTACAAGGACATCGACCAGGTCATCGAGGACGCGAAAGACCTTGT 47393 || ||||| |||||||||||||||||| |||||| | |||||| ||||| || Sbjct 349 GAACACCCCGACGCGTACAAGGACATCGACGTGGTCATGGCCGACGCGGCCGACCTCGT 407 >seq37323 Length=3330 Score = 127 bits (140), Expect = 1e-24 Identities = 514/804 (64%), Gaps = 56/804 (7%) Strand=Plus/Minus Query 46644 GTGGCGGGAACAGCTCGGGTCGCTCGGCGGCGGCAACCACTTCATCGAGCTGTGCCAGTC 46703 ||||||| | ||||| || ||||||||| |||||||||||||||||||| | | | ||| Sbjct 1901 GTGGCGGCAGCAGCTGGGCTCGCTCGGCAGCGGCAACCACTTCATCGAGGTCTCC--GTC 1844 Query 46704 GGTGATTGCGGAATACGACGACGGTGAGCTGTGGCTGTTCCTCCATTCGGGTTCGCGTGG 46763 | || ||| || || | ||||||||||||| || ||||| || || Sbjct 1843 GACGA-----------GAC--CGATGCGGTGTGGCTGTTCCTGCACTCGGGCAGCCGGGG 1797 Query 46764 TGTCGGCAACAAGATCGCCCAGAAGCANNNNNNNNNNNNNNNNNNNNNGTGCAAGCGATG 46823 || |||||| |||||||||| |||| | | ||| Sbjct 1796 CGTGGGCAACCGGATCGCCCAGCAGCACATCAAGGTCGCGCAGGCCGAGATGACGCGGCT 1737 Query 46824 GCATGTCCCGCTGGCGAATCCTGACCTGGCCTACCTACCCTCCGGCACGCAGGAATTCAC 46883 | ||| |||| | | | |||||||||||||| ||||||| | | ||| Sbjct 1736 GTGGATCCAGCTGCCCGACCGCGACCTGGCCTACCTGGTGGAGGGCACGCCGCAGTTCGA 1677 Query 46884 CACCTACCTACGAGAGCTGCGGTGGGCCCAGCGATTCGCACTCGAGAACCGCGCCGAGAT 46943 | |||| | || ||||| ||||| ||||| ||||| || |||||||| ||||| Sbjct 1676 CCGCTACATCGCCGAACTGCGATGGGCGCAGCGCTTCGCCCTGCTGAACCGCGAGGAGAT 1617 Query 46944 GATGGATCGGTTCGTCGCGGTTTTCCAGTGGTGGCTCGAGGATCAGGGGTACGACTTCCA 47003 |||||| || |||| ||| |||| || | |||| | | || | || | Sbjct 1616 GATGGACCGCGTCGT-GCG-----CCAG--GTCTC-CGAGCACCTCGG-TGCGGC----- 1572 Query 47004 TAACGACGAGATGCCTGATGAGGTCGAGGTCCGGCGCATCAACTGCCACCACAACTACAC 47063 | ||| | ||| |||| || ||||||||||||||||||| ||| Sbjct 1571 ---------GGTGC---AGGAGCGCGAG------CGGATCAACTGCCACCACAACTTCAC 1530 Query 47064 CGAGAACGTCACGATCAACGGC-GAGAGGGTGTGGCTGACGCGCAAGGGTGCGATCGACG 47122 || | | | | |||| | || | | |||||| | |||||||| || ||| | | Sbjct 1529 GCAGCAGGAGCGGCACTTCGGCCGTGACG-TCTGGCTGTCCCGCAAGGGCGCCATCCAGG 1471 Query 47123 CCAGCGAGGGCAAGTACGGACTCATCCCCGGCTCCATGGGCACCAAGTCGTACGTCGTTG 47182 | | ||||| | ||| || |||||||| || ||||| ||| || ||||| || | Sbjct 1470 CGCGTCAGGGCGACCTCGGCCTGATCCCCGGGTCGATGGGGACCGCCTCCTACGTGGTGG 1411 Query 47183 TGGGGCAGGGGAATTCGTCTGGC-CTATACTCGGCACCACATGGGGCTGGCCGGAACTTC 47241 ||||| || | || |||| || ||||| | || || || || || || | Sbjct 1410 AGGGGCGCGGCGAC-CGGATGGCGCTCGACTCGTCGCCGCACGGCGCCGGGCGCGTGCTG 1352 Query 47242 TCTCGCACCGAGGCTCGCAAGCGGTTCACTGCGGACGACCT-CGCGAAGGCCATGGAGGG 47300 || || | |||| || ||| |||||| || | || ||||| ||| ||| ||| Sbjct 1351 TCGCGGTCGAAGGCGCGGAAGGCGTTCACGATCGAGCAGCTGCGCGA-GGCGATGACGGG 1293 Query 47301 CATCGAGTACCGCCACGGTGAGGAGTGGATCGACGAGATCCCCGCAG-CGTACAAGGACA 47359 |||||||| ||| || |||| | | ||||||||||| |||| | |||||| | Sbjct 1292 CATCGAGTTCCGGGACACCGAGGCCTTCCTGGACGAGATCCC-GCAGGCCTACAAGCCGA 1234 Query 47360 TCGACCAGGTCATCGAGGACGCGAAAGACCTTGTGACAGTGGAGACCACGCTCAAGCAGC 47419 |||||||||| || | |||||| ||||| || || ||| | ||| || |||| Sbjct 1233 TCGACCAGGTGATGGCCGACGCGGCCGACCTGGTCACCGTGCGGCACACCCTGCGCCAGC 1174 Query 47420 TGGTAAACATCAAAGGGGTGTAGC 47443 |||| ||| | || || | |||| Sbjct 1173 TGGTCAACGTGAAGGGCGACTAGC 1150 Score = 82.4 bits (90), Expect = 5e-11 Identities = 101/138 (73%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 46307 TGCCATTCATCTACCCCCACGTTGCGCTGATGCCAGATGCTCACGCAGGCAAGGGGTCTG 46366 |||| |||||| |||| ||| | || |||||||| || || ||| || || | Sbjct 2616 TGCCCTTCATCCACCCGCACCTGGCCCTGATGCCCGACGCGCACCTGGGGCTCGGCGCCA 2557 Query 46367 CCGTGGGCACGGTGATCCCCACCAAGGACGCCGTCATCCCAGCGGCCGTGGGTGTCGACA 46426 | || ||| |||||||||| || | |||||| || || || || ||||| || |||| Sbjct 2556 CGGTCGGCTCGGTGATCCCGACGCTCGGCGCCGTGATGCCGGCCGCGGTGGGGGTGGACA 2497 Query 46427 TCGGTTGCGGGATGATCG 46444 |||| ||||||||||||| Sbjct 2496 TCGGCTGCGGGATGATCG 2479 >seq82131 Length=972 Score = 104 bits (114), Expect = 1e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 43581 GTCGACGTCATCATCTGCACCCGAGGCGGTGGATCCAAGGAGGACCTGCTGCCGTGGTCT 43640 ||||| || ||| || | | || ||||| || || ||||||||||||||| | || Sbjct 156 GTCGAGGTGATCGTCATCGCGCGCGGCGGCGGTTCGCTGGAGGACCTGCTGCCCTTCTCC 215 Query 43641 GATGAGGGCTTGGTGCGTGCGGCGTTCGCTTGCAACACCCCCATTGTCTCCGCGATCGGT 43700 || ||||| | || || |||| ||| ||| || | ||| ||| ||||| Sbjct 216 GACGAGGGGCTCGTCCGCGCGGTCGCCGCGGCGCGCACGCCGGTGGTCAGCGCCATCGGC 275 Query 43701 CACGAGAACGACTGTCCACTCCTTGACCGTGTGGCGGACCTGCGTGCCTCGACGCCCACC 43760 ||||||| |||| || |||| |||| || || ||| |||| ||||||||||| ||| Sbjct 276 CACGAGAGCGACAACCCGATCCTCGACCTCGTCGCCGACGTGCGCGCCTCGACGCCGACC 335 Query 43761 GACGCTGCGAAGAGGGTTGTGCCAGACCTC 43790 ||||| || ||| |||| ||||| ||| || Sbjct 336 GACGCGGCCAAGCGGGTCGTGCCCGACGTC 365 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 313399317474813