Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Castanea_20mollissima_20[genbank_20GCA_5F000763605.1_202014-10-06] 133,589 sequences; 833,240,550 total letters Query= NC_031239.1 Length=59337 Score E Sequences producing significant alignments: (Bits) Value seq93363 111 6e-20 >seq93363 Length=802 Score = 111 bits (122), Expect = 6e-20 Identities = 154/215 (72%), Gaps = 3/215 (1%) Strand=Plus/Minus Query 5372 GTTCTCGCGCGCCGAGCTGATCGACCAGTTGGTGTACGAGGATTTCTCGCGCGCCGACGC 5431 |||||| ||| ||| |||||| ||| ||| |||||||| |||||| ||||||||| Sbjct 701 GTTCTCCCGCTCCGGTTTGATCGGGCAGCTGGAGTACGAGGGCTTCTCGACCGCCGACGC 642 Query 5432 CGAGTGGGCCGTTGACAACGTGACCGTGGATTGGTTCGAGCAGGCCGAGAAGTCGGCAGC 5491 | | | ||| || |||| |||||||| |||| |||||||||| ||||| ||| || Sbjct 641 CACCTACGGCGTGGATCACGTCACCGTGGACTGGTACGAGCAGGCCAAGAAGAAGGCCGC 582 Query 5492 CGACTACATCGAGTTCGTCGGTGGGTTCTCGTATCAGGAGCTGGTCGACCAGCTCGTCTA 5551 | |||| | ||||| | ||||| |||| || |||||||||||| || Sbjct 581 CTCCTACCTGCAGTTCAGCTCC---TTCTCCCGGCAGGGCTTGATCGACCAGCTCGAGTA 525 Query 5552 CGAGCAGTTCACGCAGGAGCAGGCCGAGCACGGCG 5586 |||| ||||| || || ||||||| |||||| Sbjct 524 CGAGGGATTCACCCACGATCAGGCCGTCTACGGCG 490 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 189455775623782