Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Castanea_20mollissima_20[genbank_20GCA_5F000763605.1_202014-10-06] 133,589 sequences; 833,240,550 total letters Query= NC_031243.1 Length=42395 Score E Sequences producing significant alignments: (Bits) Value seq81249 145 2e-30 >seq81249 Length=1001 Score = 145 bits (160), Expect = 2e-30 Identities = 128/160 (80%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 36909 GTTTCAGCAGTGGTGCGCGCAGTGGGCGGCTGAGTGCTTGCGCGTGTTGAAACCGGGCGG 36968 ||| ||||| ||||||| ||||||||| || |||||| | ||| | | ||||| ||||| Sbjct 160 GTTCCAGCACTGGTGCGAGCAGTGGGCCGCCGAGTGCCTCCGCATCCTCAAACCCGGCGG 101 Query 36969 TCACCTGCTCGCGTTCGGCGGCTCCCGCACCTGGCACCGGCTGGCGGCGGCGATCGAGGA 37028 || || ||||| |||||||| | ||||||| ||||| || || || | |||||||| Sbjct 100 GCAGCTCCTCGCCTTCGGCGGTACTCGCACCTTCCACCGCCTCGCTGCCGGAATCGAGGA 41 Query 37029 CGCGGGCTTCGAGGTTCGCGACTCGATCGCGTGGCTGTAC 37068 ||| || |||||| | |||||||||||||||||||| ||| Sbjct 40 CGCCGGATTCGAGATCCGCGACTCGATCGCGTGGCTCTAC 1 Score = 96.9 bits (106), Expect = 9e-16 Identities = 109/146 (75%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 36637 ATGAACCACCCGTACTACCAAGACGATCAGGTGACGCTCTACCACGGCGACTGCCTGCAC 36696 |||| | |||| ||||| ||| || | ||||||||||| |||||||||||| || Sbjct 324 ATGATCGCCCCGCACTACTCCACCGAGCACGCGACGCTCTACCTCGGCGACTGCCTCGAC 265 Query 36697 GTGCTCGCCGAGCTGCCCGATCGCAGCGTCGACGCCGTGGTTTGCGACCCGCCCTACGGG 36756 || ||| |||||||||| ||||||| ||||||| || ||| |||||||||| Sbjct 264 GTCCTCCGGAAGCTGCCCGACGGCAGCGTGCACGCCGTCGTCACCGATCCGCCCTACGCC 205 Query 36757 CTGGAGTTCATGGGCAAGGAGTGGGA 36782 || || ||||||||| | | ||||| Sbjct 204 CTCGACTTCATGGGCCACGGCTGGGA 179 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 135327379687626