Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Castanea_20mollissima_20[genbank_20GCA_5F000763605.1_202014-10-06] 133,589 sequences; 833,240,550 total letters Query= NC_031252.1 Length=51290 Score E Sequences producing significant alignments: (Bits) Value seq115307 159 1e-34 >seq115307 Length=544 Score = 159 bits (176), Expect = 1e-34 Identities = 160/208 (77%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 30898 ATGGCCGGTGAAACAACGATCACAGTGATCGGAAACCTGACGAACGATCCAGAGCTACGG 30957 ||||| |||||||| ||||| ||||||| ||||| |||||||| || || || || Sbjct 208 ATGGCGGGTGAAACCGTCATCACGCTGATCGGGAACCTCACGAACGACCCCGAACTGCGC 149 Query 30958 TTCACGCCGTCTGGCAGCGCTGTCGCGAACTTCACGATCGCGAGCACACCGCGAACGTTC 31017 ||||| ||||| || ||| || || ||||||||| |||| || || || |||||| Sbjct 148 TTCACCCCGTCGGGTGCCGCGGTGGCCAACTTCACGGTCGCCTCGACTCCCCGCACGTTC 89 Query 31018 GATCGACAGTCAAACGAGTGGAAAGACGGCGAGACGCTCTTCCTGCGCGCTGCTGTCTGG 31077 || || ||||| ||||||||||| |||||||||||||| ||| |||| || ||||| Sbjct 88 GACCGTCAGTCGAACGAGTGGAAGGACGGCGAGACGCTGTTCATGCGTTGCGCGATCTGG 29 Query 31078 CGCGAGACTGCAGAGAATGTCGCAGAGT 31105 ||||| | || ||||| ||||| |||| Sbjct 28 CGCGAAGCGGCGGAGAACGTCGCCGAGT 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 163746225269736