Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Castanea_20mollissima_20[genbank_20GCA_5F000763605.1_202014-10-06] 133,589 sequences; 833,240,550 total letters Query= NC_031256.1 Length=53486 Score E Sequences producing significant alignments: (Bits) Value seq103996 82.4 3e-11 seq37623 82.4 3e-11 >seq103996 Length=666 Score = 82.4 bits (90), Expect = 3e-11 Identities = 59/67 (88%), Gaps = 1/67 (1%) Strand=Plus/Minus Query 6163 CTAGGGCACGTAGCTCAATCGGTAGAGCAGCGGTCTCCAAAGCCGCAGGTTCCAGGTTCG 6222 ||||||| || ||||||| ||||||||||||||||||||| ||||||||| |||||||| Sbjct 464 CTAGGGCG-GTGGCTCAATTGGTAGAGCAGCGGTCTCCAAAACCGCAGGTTGCAGGTTCG 406 Query 6223 AACCCTG 6229 | |||| Sbjct 405 AGTCCTG 399 >seq37623 Length=2350 Score = 82.4 bits (90), Expect = 3e-11 Identities = 59/67 (88%), Gaps = 1/67 (1%) Strand=Plus/Minus Query 6163 CTAGGGCACGTAGCTCAATCGGTAGAGCAGCGGTCTCCAAAGCCGCAGGTTCCAGGTTCG 6222 ||||||| || ||||||| ||||||||||||||||||||| ||||||||| |||||||| Sbjct 1369 CTAGGGCG-GTGGCTCAATTGGTAGAGCAGCGGTCTCCAAAACCGCAGGTTGCAGGTTCG 1311 Query 6223 AACCCTG 6229 | |||| Sbjct 1310 AGTCCTG 1304 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 170762277534864