Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Castanea_20mollissima_20[genbank_20GCA_5F000763605.1_202014-10-06] 133,589 sequences; 833,240,550 total letters Query= NC_032111.1 Length=163005 Score E Sequences producing significant alignments: (Bits) Value seq118998 201 1e-46 seq99200 145 8e-30 >seq118998 Length=507 Score = 201 bits (222), Expect = 1e-46 Identities = 161/188 (86%), Gaps = 6/188 (3%) Strand=Plus/Minus Query 8424 CTCCTGCCTCAGCCTCCAGAGTAGCTGGGATTACAGGCAAAAGCCACCACGCCAAGCTAA 8483 ||||||||||||||||| |||||||||||| ||||||| ||||||| ||| ||||| Sbjct 507 CTCCTGCCTCAGCCTCCCGAGTAGCTGGGACTACAGGCGCCCGCCACCATGCCTGGCTAA 448 Query 8484 -TTTTTGTA-TTTTTAGTAGAGA-GAGGGTTTCACCATGTTGGCCAGGCTGGTCTCGAAC 8540 |||||||| ||||||||||||| | ||||||||||||||| |||||| |||||| || | Sbjct 447 TTTTTTGTATTTTTTAGTAGAGACGGGGGTTTCACCATGTTAGCCAGGATGGTCTTGATC 388 Query 8541 TCCTGACCTCATGTGATCCACCTGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGCATGA 8600 ||||||||||| ||||||||| |||| ||||||||||| ||| |||||||||| ||| Sbjct 387 TCCTGACCTCA--TGATCCACCCGCCT-AGCCTCCCAAAGGGCTAGGATTACAGGTGTGA 331 Query 8601 GCCACCGC 8608 ||||| || Sbjct 330 GCCACTGC 323 >seq99200 Length=725 Score = 145 bits (160), Expect = 8e-30 Identities = 334/495 (67%), Gaps = 11/495 (2%) Strand=Plus/Plus Query 23530 CCTTCATCCCTACTAATCAATTCATTAGAAAATGTTAATCCTGGCATTAATCCTCGTTTT 23589 |||||||| | | |||| || || || ||||| | || ||||| | |||| || Sbjct 235 CCTTCATCACGAGAGATCAGCTCGTTGGAGAATGTCAGACCAGGCATGAGACCTCTCTTC 294 Query 23590 TTAATCCAAAATATTGCAGCAAATGATCCGGAAAAGAAAATACCCTCAACAGCCGCAAAG 23649 || | ||| || || | || || || ||||| ||||| || |||||||| || || || Sbjct 295 TTGAGCCAGAAAATGGAGGCGAAAGACCCGGAGAAGAAGATGCCCTCAACGGCGGCGAAT 354 Query 23650 GCCACAAGACGT-GTACCAAATGTTGCATTA-TAATCAGAAATCCAtttttttGTCCAAT 23707 ||||| |||||| | | ||| ||| || | |||||| |||||| | | ||| | Sbjct 355 GCCACCAGACGTTGGGCGAAAC--TGCTTTCCTTATCAGAGATCCATCTCAACGCCCACT 412 Query 23708 TAGCCTTCAATTTTACACACTCAATTGTTTCAATTGCTTTTAAGAGAAAAGTTTTTTCTT 23767 ||||||| | || ||| || || || || | ||||| | | ||||| Sbjct 413 CAGCCTTCTTGCGGATGCATGGAATAGTGTCGATAGCATCGAAGAGGTAC--TGTTTCTG 470 Query 23768 CATTATCTGTT--ATATATGTATCAATTAGTAAACTATACATTTCAGAATGAATATTTTC 23825 | || || || | | |||||||||| || || || |||||||| || || ||||| || Sbjct 471 CTTTGGCTCTTTCACAAATGTATCAATGAGCAAGCTGTACATTTCGGAGTGGATATTCTC 530 Query 23826 AATAGCAATCTGAAACCCATAAAAACATCTAGCTTCAGACAATTGAACATCATTAAAAAA 23885 || ||||| || |||||||| |||| ||| || | | ||| || ||| | || Sbjct 531 CATCATGATCTGGAAACCATAAAAGCATCGAGCCTCTGGTACTTGCACCTCACCCGAGAA 590 Query 23886 TCTTTTAGCTAAATTTTCGTTAACAATACCATCACTAGCAGCAAAGAAAGCAAGAACATA 23945 ||| | | | || ||||| |||||||| ||| ||||| ||||||||||| || | Sbjct 591 TCTCTCGACAAGGTTCTCGTTGACAATACCGTCAGAGGCAGCGAAGAAAGCAAGGACGTG 650 Query 23946 TTTTATAAAATGTCTTTCATC--AGTTGATAAT-TTTTTCCAATCATTAATATCTTTTGA 24002 | ||||| | ||| ||||| ||||| | || | ||| || | ||||||||||| Sbjct 651 TGAGATAAAGTATCTCTCATCGTCGTTGAGCTTGTTGTGCCAGTCGTGCATATCTTTTGA 710 Query 24003 TAAATCAACTTCATC 24017 | ||| || || || Sbjct 711 GAGATCCACCTCTTC 725 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 520617186744600