Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Catharanthus_20roseus_20[genbank_20GCA_5F000949345.1_202015-03-06] 79,302 sequences; 522,653,749 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq35021 114 3e-20 seq77370 107 4e-18 seq79026 105 1e-17 seq74941 104 5e-17 seq70882 104 5e-17 seq66727 104 5e-17 seq59247 104 5e-17 seq33477 104 5e-17 seq78575 98.7 2e-15 seq73943 98.7 2e-15 seq40213 98.7 2e-15 seq24804 98.7 2e-15 seq76758 95.1 3e-14 seq56707 91.5 3e-13 >seq35021 Length=73443 Score = 114 bits (126), Expect = 3e-20 Identities = 570/886 (64%), Gaps = 35/886 (4%) Strand=Plus/Minus Query 229753 TCTGC--GTTCCCAATCCAATATCCCGATATGTGGGATATGTACAAGAAGGCGGTGGCAA 229810 ||||| ||||||||| ||||| || | || ||||| |||||||||||||| | ||| Sbjct 66630 TCTGCATGTTCCCAATTCAATACCCTCAGATTTGGGAGATGTACAAGAAGGCAGAGGCTT 66571 Query 229811 CTTTCTGGACCACTGAGGAAGTTCCTCTGAACGCA-GACGT-CGTCGACTGGCGTGAGAA 229868 | ||||||||| | ||||| || ||| | | || ||| | |||| | ||| || Sbjct 66570 CCTTCTGGACCGCCGAGGAGGTCGATCT-ATCTCAGGACCTCCGTC-AATGG---GAAGC 66516 Query 229869 ACTCAATGACGACGAACGTCATTTCATCAAACACATCCTAGGTTTTTTCGCAGGCTCCGA 229928 |||| | |||||| ||||| ||||||| ||| | || | || ||||| | || || Sbjct 66515 CCTCACTCCCGACGAGCGTCACTTCATCACTCACGTTCTCGCCTTCTTCGCCGCTTCTGA 66456 Query 229929 TGGTATTGTGATGGAAAATCT-GCAGACCAACTTTAGTGTGGAAGTAACGGTTCCAGAGG 229987 ||| ||||| |||| ||||| || | | | || | ||||| | || | || | Sbjct 66455 TGGCATTGTTTTGGAGAATCTCGCCGGTCGA-TTCATGAAAGAAGTTCAGATTTCCGAAG 66397 Query 229988 CACGGCAATTTTATGCTTACCAAACATTCAACGAATCTATCCATTCTGAACAATATGCTC 230047 | || ||||| | || ||||| || ||| ||| || || || ||| || Sbjct 66396 CCCGTGCCTTTTACGGTTTCCAAATCGCCATCGAGAATATTCACTCCGAGATGTATAGTC 66337 Query 230048 TGCTTATCGA--CGCGCTTA----TTTCCGACGAGCAAGAACGGAACGAGCTTTTTGATG 230101 | | |||| | | || ||| | ||| |||||| || || ||| | Sbjct 66336 TCTTGCTCGAGTCTTACATAAAGGACTCCAATGAG-AAGAACAGA-----CTCTTTCGCG 66283 Query 230102 CCATTGAAAACATCCCGGCGGTTCATAACAAGGCAAAGTGGGCTCAGAAATGGCTAGA-A 230160 | || |||| || || ||| | || ||||| || ||||| | ||| | || Sbjct 66282 CAATCGAAACAATTCCTTGCGTTGAAAAGAAGGCCAAATGGGCACTTCGTTGGATCGACG 66223 Query 230161 CCTGGTAAATCGTTTGCCGAGCGTCTCGTCGCCTGGGTGTGTGTTGAAGGTATTCTGTTT 230220 || | |||| |||||||| ||| | ||||||| | ||||| ||||| || | || Sbjct 66222 GCTCG-GAATCCTTTGCCGAACGTATAGTCGCCTTCGCTTGTGTCGAAGGAATATTTTTC 66164 Query 230221 TCCGGGAGTTTCTGCGCCATCTTTTGGCTGCGGAACAAAGGTG---TGATGCCTGGCCTC 230277 || |||||||| ||||| || |||||| | || ||| ||| | ||||| || || Sbjct 66163 TCGGGGAGTTTTTGCGCGATATTTTGGTT---AAAGAAACGTGGCCTTATGCCCGGACTA 66107 Query 230278 GGTCTGTCTAACGAGTTCATCAGTCGCGACGAGGGTCTCCATCAACAGTTCGGCGAGCTT 230337 | || |||||||| ||| || ||||| |||||||| | | || || |||| Sbjct 66106 ACCTTCTCGAACGAGTTAATCTCCCGAGACGAAGGTCTCCA-CTGCGATTTCGCTTGCTT 66048 Query 230338 A-TGTATTCAAAGCTCCAGAACAAGCTACCATTCGAGACGGTCAAACAAATCATTACAGA 230396 | | || || | || || || | || | ||| |||| | | || Sbjct 66047 ACTCTACAGTCTTCTGCGGATGAAACTTTCCGAGGAAAGAATCAGGGGAATCGTAGCGGA 65988 Query 230397 AGCAGTTGAAAACGAAAAGGAGTTCATTTGTGACGCTATTCCATGTCGCCTTATTGGCAT 230456 |||||||| | ||| | || ||| | || || ||| | || ||| ||| |||| || Sbjct 65987 TGCAGTTGATATCGAGAGAGAATTCGTCTGCGATGCTCTGCCTTGTGCCCTAGTTGGTAT 65928 Query 230457 GAACGCTGAACTTATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTTGTTGCACT 230516 ||||| || || ||| | |||||||| |||||||| || ||| | | ||| || | Sbjct 65927 GAACGGAGATCTAATGAGCCAGTACATTGAATTCGTTGCAGACAGATTGCTTGAAGCTTT 65868 Query 230517 TGGTTA-CGAGAAAGTGTACAACTCTAAGAACCCCTTTGCATTTATGGAGCTCATTTCGC 230575 || || ||| || |||| || | ||| || || | | ||||| | ||| Sbjct 65867 GGGATATCGA-AAGATGTATAATGTTCTGAATCCATTCGATTGGATGGAATTGATTAGTT 65809 Query 230576 TTCAAGGGAAGACCAACTTCTTCGAAAAGCGTGTCAGTGACTATCA 230621 | || |||||||| || |||||||| ||| | || | || ||||| Sbjct 65808 TGCAGGGGAAGACGAATTTCTTCGAGAAGAGAGTGGGAGAATATCA 65763 >seq77370 Length=32316 Score = 107 bits (118), Expect = 4e-18 Identities = 68/74 (92%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 165708 TTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGA 165767 ||||||||||||||||||||||||||||| || || |||| || |||||||||||||||| Sbjct 19067 TTGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGA 19008 Query 165768 GCCCCACGATGGGC 165781 |||||||| ||||| Sbjct 19007 GCCCCACGGTGGGC 18994 >seq79026 Length=34473 Score = 105 bits (116), Expect = 1e-17 Identities = 69/76 (91%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 165706 GCTTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTC 165765 ||| ||||||||||||||||||||||||||| || || |||| || |||||||||||||| Sbjct 5906 GCTGGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTC 5847 Query 165766 GAGCCCCACGATGGGC 165781 |||||||||| ||||| Sbjct 5846 GAGCCCCACGGTGGGC 5831 >seq74941 Length=86249 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| || || |||| || |||||||||||||||||| Sbjct 17096 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 17037 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 17036 CCCACGGTGGGC 17025 >seq70882 Length=145281 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| || || |||| || |||||||||||||||||| Sbjct 109152 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 109093 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 109092 CCCACGGTGGGC 109081 >seq66727 Length=61197 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| || || |||| || |||||||||||||||||| Sbjct 48730 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 48789 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 48790 CCCACGGTGGGC 48801 >seq59247 Length=39225 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| || || |||| || |||||||||||||||||| Sbjct 31127 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 31186 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 31187 CCCACGGTGGGC 31198 >seq33477 Length=49680 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| || || |||| || |||||||||||||||||| Sbjct 13436 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 13377 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 13376 CCCACGGTGGGC 13365 >seq78575 Length=21665 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 14795 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 14854 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 14855 CCCACGGTGGGC 14866 >seq73943 Length=20406 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 3006 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 3065 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 3066 CCCACGGTGGGC 3077 >seq40213 Length=25986 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| || || |||| || |||||||||||||||| | Sbjct 12304 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAAC 12363 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 12364 CCCACGGTGGGC 12375 >seq24804 Length=40873 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 11672 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 11731 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 11732 CCCACGGTGGGC 11743 >seq76758 Length=45002 Score = 95.1 bits (104), Expect = 3e-14 Identities = 66/75 (88%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 165707 CTTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCG 165766 ||||||||||||||||||| |||||||||| || || |||| || ||||||||| ||| | Sbjct 11255 CTTGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGTGTTTG 11314 Query 165767 AGCCCCACGATGGGC 165781 ||||||||| ||||| Sbjct 11315 AGCCCCACGGTGGGC 11329 >seq56707 Length=29119 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/72 (89%), Gaps = 1/72 (1%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||| ||||||||| Sbjct 28811 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGT-GGTTCGAGC 28869 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 28870 CCCACGGTGGGC 28881 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1056749190652260