Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Catharanthus_20roseus_20[genbank_20GCA_5F000949345.1_202015-03-06] 79,302 sequences; 522,653,749 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq35021 145 8e-30 >seq35021 Length=73443 Score = 145 bits (160), Expect = 8e-30 Identities = 379/578 (66%), Gaps = 9/578 (2%) Strand=Plus/Plus Query 16964 CATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAAC 17023 || ||||||||||| || | || ||||||| | ||| | ||||| || || || | Sbjct 66051 CAAGCGAAATCGCAGTGGAGACCTTCGTCTCGGGAGATTAACTCGTTCGAGAAGGTTAGT 66110 Query 17024 CCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAAT 17083 |||||||| || |||||||||||||||||||||||| || ||| || || ||| Sbjct 66111 CCGGGCATAAGGCCACGTTTCTTTAACCAAAATATCGCGCAAAAACTCCCCGAGAAAAAT 66170 Query 17084 ATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGC---GTACGTCGCGTCTTTGTTA 17140 || || ||||| | || || |||| || |||||||| | | || | | | | Sbjct 66171 ATTCCTTCGACACAAGCGAAGGCGACTATACGTTCGGCAAAGGATTCCGAGCCGTCG--- 66227 Query 17141 CGAATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCTATGGCC 17200 ||||| | |||| | ||| || | | | |||| || ||||| || || Sbjct 66228 ---ATCCAACGAAGTGCCCATTTGGCCTTCTTTTCAACGCAAGGAATTGTTTCGATTGCG 66284 Query 17201 TTAAATAATTTCTCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGTAGGCTGTAC 17260 ||| | | | | || || | ||| |||| || | |||| | || || ||| Sbjct 66285 CGAAAGAGTCTGTTCTTCTCATTGGAGTCCTTTATGTAAGACTCGAGCAAGAGACTATAC 66344 Query 17261 ATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGCTTCCGCT 17320 || |||||||| || ||||| ||||| || || || ||||||||| |||||||| | Sbjct 66345 ATCTCGGAGTGAATATTCTCGATGGCGATTTGGAAACCGTAAAAGGCACGGGCTTCGGAA 66404 Query 17321 ATTTGAACTTCCACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTCGCTCGCG 17380 || |||||||| |||||| | || ||||| || || ||||| || ||| Sbjct 66405 ATCTGAACTTCTTTCATGAATCGACCGGCGAGATTCTCCAAAACAATGCCATCAGAAGCG 66464 Query 17381 GCGAAAAACGCCAATATATGCTTAATGAAATATTTTTCGTCCGGTGTAAGAACGCGCCAG 17440 ||||| || || | | || | ||||| | ||||| || || || | ||| Sbjct 66465 GCGAAGAAGGCGAGAACGTGAGTGATGAAGTGACGCTCGTCGGGAGTGAGGGCTTCCCAT 66524 Query 17441 TCCTTTAAATCTTTGGATATATCCACTTCTTCGGGGGTCCAAAAACTAGCCACTGCCTTT 17500 | | || | |||| ||| || || |||| |||||| || |||| ||||||| Sbjct 66525 TGACGGAGGTCCTGAGATAGATCGACCTCCTCGGCGGTCCAGAAGGAAGCCTCTGCCTTC 66584 Query 17501 TTATACATATTCCAAATATCATTGTATTGTATGGGGAA 17538 || ||||| | |||||| | | |||||| || ||||| Sbjct 66585 TTGTACATCTCCCAAATCTGAGGGTATTGAATTGGGAA 66622 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517032569985360