Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Catharanthus_20roseus_20[genbank_20GCA_5F000949345.1_202015-03-06]
79,302 sequences; 522,653,749 total letters
Query= NC_001132.2
Length=161773
Score E
Sequences producing significant alignments: (Bits) Value
seq35021 145 8e-30
>seq35021
Length=73443
Score = 145 bits (160), Expect = 8e-30
Identities = 379/578 (66%), Gaps = 9/578 (2%)
Strand=Plus/Plus
Query 16964 CATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAAC 17023
|| ||||||||||| || | || ||||||| | ||| | ||||| || || || |
Sbjct 66051 CAAGCGAAATCGCAGTGGAGACCTTCGTCTCGGGAGATTAACTCGTTCGAGAAGGTTAGT 66110
Query 17024 CCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAAT 17083
|||||||| || |||||||||||||||||||||||| || ||| || || |||
Sbjct 66111 CCGGGCATAAGGCCACGTTTCTTTAACCAAAATATCGCGCAAAAACTCCCCGAGAAAAAT 66170
Query 17084 ATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGC---GTACGTCGCGTCTTTGTTA 17140
|| || ||||| | || || |||| || |||||||| | | || | | | |
Sbjct 66171 ATTCCTTCGACACAAGCGAAGGCGACTATACGTTCGGCAAAGGATTCCGAGCCGTCG--- 66227
Query 17141 CGAATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCTATGGCC 17200
||||| | |||| | ||| || | | | |||| || ||||| || ||
Sbjct 66228 ---ATCCAACGAAGTGCCCATTTGGCCTTCTTTTCAACGCAAGGAATTGTTTCGATTGCG 66284
Query 17201 TTAAATAATTTCTCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGTAGGCTGTAC 17260
||| | | | | || || | ||| |||| || | |||| | || || |||
Sbjct 66285 CGAAAGAGTCTGTTCTTCTCATTGGAGTCCTTTATGTAAGACTCGAGCAAGAGACTATAC 66344
Query 17261 ATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGCTTCCGCT 17320
|| |||||||| || ||||| ||||| || || || ||||||||| |||||||| |
Sbjct 66345 ATCTCGGAGTGAATATTCTCGATGGCGATTTGGAAACCGTAAAAGGCACGGGCTTCGGAA 66404
Query 17321 ATTTGAACTTCCACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTCGCTCGCG 17380
|| |||||||| |||||| | || ||||| || || ||||| || |||
Sbjct 66405 ATCTGAACTTCTTTCATGAATCGACCGGCGAGATTCTCCAAAACAATGCCATCAGAAGCG 66464
Query 17381 GCGAAAAACGCCAATATATGCTTAATGAAATATTTTTCGTCCGGTGTAAGAACGCGCCAG 17440
||||| || || | | || | ||||| | ||||| || || || | |||
Sbjct 66465 GCGAAGAAGGCGAGAACGTGAGTGATGAAGTGACGCTCGTCGGGAGTGAGGGCTTCCCAT 66524
Query 17441 TCCTTTAAATCTTTGGATATATCCACTTCTTCGGGGGTCCAAAAACTAGCCACTGCCTTT 17500
| | || | |||| ||| || || |||| |||||| || |||| |||||||
Sbjct 66525 TGACGGAGGTCCTGAGATAGATCGACCTCCTCGGCGGTCCAGAAGGAAGCCTCTGCCTTC 66584
Query 17501 TTATACATATTCCAAATATCATTGTATTGTATGGGGAA 17538
|| ||||| | |||||| | | |||||| || |||||
Sbjct 66585 TTGTACATCTCCCAAATCTGAGGGTATTGAATTGGGAA 66622
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 517032569985360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |