Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Catharanthus_20roseus_20[genbank_20GCA_5F000949345.1_202015-03-06]
79,302 sequences; 522,653,749 total letters
Query= NC_001266.1
Length=159857
Score E
Sequences producing significant alignments: (Bits) Value
seq35021 98.7 1e-15
>seq35021
Length=73443
Score = 98.7 bits (108), Expect = 1e-15
Identities = 373/580 (64%), Gaps = 14/580 (2%)
Strand=Plus/Plus
Query 16202 CACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAAC 16261
|| ||||| ||||| || || |||||||||| | ||| | ||||| || || ||||
Sbjct 66051 CAAGCGAAATCGCAGTGGAGACCTTCGTCTCGGGAGATTAACTCGTTCGAGAAGGTTAGT 66110
Query 16262 CCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCAAATGACCCCGAAAAGAAT 16321
|| ||||| || |||||||||||||| |||||||| ||| |||||| || |||
Sbjct 66111 CCGGGCATAAGGCCACGTTTCTTTAACCAAAATATCGCGCAAAAACTCCCCGAGAAAAAT 66170
Query 16322 ATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTACG--TAGCATCTTTATTAC 16379
|| || || ||| | || || |||| || ||||| || | | | | | | |
Sbjct 66171 ATTCCTTCGACACAAGCGAAGGCGACTATACGTTCGGCAAAGGATTCCGAGCCGT----C 66226
Query 16380 GAATCCATTTCTGTACCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTCTATGGCCT 16439
| ||||| || |||||| ||| || | || | ||| || ||||| || ||
Sbjct 66227 G-ATCCAACGAAGTGCCCATTTGGCCTTCTTTTCAACGCAAGGAATTGTTTCGATTGCGC 66285
Query 16440 TAAACAATTTCTCTTTTTCCTGAATATCGATTATATACGTATCAATCAGTAAACTGTACA 16499
||| | | | | || || | || |||| || | || | || | ||| ||||
Sbjct 66286 GAAAGAGTCTGTTCTTCTCATTGGAGTCCTTTATGTAAGACTCGAGCAAGAGACTATACA 66345
Query 16500 TTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATCGAGCCTCCGCTA 16559
| || ||||| || ||||| ||||| || || || || || ||| || || || | |
Sbjct 66346 TCTCGGAGTGAATATTCTCGATGGCGATTTGGAAACCGTAAAAGGCACGGGCTTCGGAAA 66405
Query 16560 TTTGTACTTC---CACGTAAAATCGTTCCGCCAGGTTCTCATTCACGATACCGTCACTTG 16616
| || ||||| || | ||||| | || || ||||| || || || ||| |
Sbjct 66406 TCTGAACTTCTTTCATG---AATCGACCGGCGAGATTCTCCAAAACAATGCCATCAGAAG 66462
Query 16617 CAGCAAAAAACGCCAATATGTGCTTAATGAAATATTTTTCGTCAGATGTAAGAATATGCC 16676
| || || || || | | ||| | ||||| | ||||| | || || | ||
Sbjct 66463 CGGCGAAGAAGGCGAGAACGTGAGTGATGAAGTGACGCTCGTCGGGAGTGAGGGCTTCCC 66522
Query 16677 AATCTTTTAAATCTTTGGATATATCCACTTCTTCTGGCGTCCAAAAGCTAGCCACTGCCT 16736
| | | || | |||| ||| || || || | ||||| ||| |||| ||||||
Sbjct 66523 ATTGACGGAGGTCCTGAGATAGATCGACCTCCTCGGCGGTCCAGAAGGAAGCCTCTGCCT 66582
Query 16737 TTTTATACATTTTCCAAATATCATTGTATTGTA-TGGGAA 16775
| || ||||| | |||||| | | |||||| | ||||||
Sbjct 66583 TCTTGTACATCTCCCAAATCTGAGGGTATTGAATTGGGAA 66622
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 510907447690640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |