Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Catharanthus_20roseus_20[genbank_20GCA_5F000949345.1_202015-03-06] 79,302 sequences; 522,653,749 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq35021 98.7 1e-15 >seq35021 Length=73443 Score = 98.7 bits (108), Expect = 1e-15 Identities = 373/580 (64%), Gaps = 14/580 (2%) Strand=Plus/Plus Query 16202 CACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAAC 16261 || ||||| ||||| || || |||||||||| | ||| | ||||| || || |||| Sbjct 66051 CAAGCGAAATCGCAGTGGAGACCTTCGTCTCGGGAGATTAACTCGTTCGAGAAGGTTAGT 66110 Query 16262 CCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCAAATGACCCCGAAAAGAAT 16321 || ||||| || |||||||||||||| |||||||| ||| |||||| || ||| Sbjct 66111 CCGGGCATAAGGCCACGTTTCTTTAACCAAAATATCGCGCAAAAACTCCCCGAGAAAAAT 66170 Query 16322 ATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTACG--TAGCATCTTTATTAC 16379 || || || ||| | || || |||| || ||||| || | | | | | | | Sbjct 66171 ATTCCTTCGACACAAGCGAAGGCGACTATACGTTCGGCAAAGGATTCCGAGCCGT----C 66226 Query 16380 GAATCCATTTCTGTACCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTCTATGGCCT 16439 | ||||| || |||||| ||| || | || | ||| || ||||| || || Sbjct 66227 G-ATCCAACGAAGTGCCCATTTGGCCTTCTTTTCAACGCAAGGAATTGTTTCGATTGCGC 66285 Query 16440 TAAACAATTTCTCTTTTTCCTGAATATCGATTATATACGTATCAATCAGTAAACTGTACA 16499 ||| | | | | || || | || |||| || | || | || | ||| |||| Sbjct 66286 GAAAGAGTCTGTTCTTCTCATTGGAGTCCTTTATGTAAGACTCGAGCAAGAGACTATACA 66345 Query 16500 TTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATCGAGCCTCCGCTA 16559 | || ||||| || ||||| ||||| || || || || || ||| || || || | | Sbjct 66346 TCTCGGAGTGAATATTCTCGATGGCGATTTGGAAACCGTAAAAGGCACGGGCTTCGGAAA 66405 Query 16560 TTTGTACTTC---CACGTAAAATCGTTCCGCCAGGTTCTCATTCACGATACCGTCACTTG 16616 | || ||||| || | ||||| | || || ||||| || || || ||| | Sbjct 66406 TCTGAACTTCTTTCATG---AATCGACCGGCGAGATTCTCCAAAACAATGCCATCAGAAG 66462 Query 16617 CAGCAAAAAACGCCAATATGTGCTTAATGAAATATTTTTCGTCAGATGTAAGAATATGCC 16676 | || || || || | | ||| | ||||| | ||||| | || || | || Sbjct 66463 CGGCGAAGAAGGCGAGAACGTGAGTGATGAAGTGACGCTCGTCGGGAGTGAGGGCTTCCC 66522 Query 16677 AATCTTTTAAATCTTTGGATATATCCACTTCTTCTGGCGTCCAAAAGCTAGCCACTGCCT 16736 | | | || | |||| ||| || || || | ||||| ||| |||| |||||| Sbjct 66523 ATTGACGGAGGTCCTGAGATAGATCGACCTCCTCGGCGGTCCAGAAGGAAGCCTCTGCCT 66582 Query 16737 TTTTATACATTTTCCAAATATCATTGTATTGTA-TGGGAA 16775 | || ||||| | |||||| | | |||||| | |||||| Sbjct 66583 TCTTGTACATCTCCCAAATCTGAGGGTATTGAATTGGGAA 66622 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 510907447690640