Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Catharanthus_20roseus_20[genbank_20GCA_5F000949345.1_202015-03-06] 79,302 sequences; 522,653,749 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq35021 192 7e-44 seq39070 168 8e-37 >seq35021 Length=73443 Score = 192 bits (212), Expect = 7e-44 Identities = 394/582 (68%), Gaps = 8/582 (1%) Strand=Plus/Plus Query 24132 AAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTG 24191 || || |||||||||||||| ||||| ||||||| ||||| ||||| || || || Sbjct 66048 AAGCAAGCGAAATCGCAGTGGAGACCTTCGTCTCGGGAGATTAACTCGTTCGAGAAGGTT 66107 Query 24192 AGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCA-GAAAA 24250 ||||||||||| |||||||| || || | ||||||||| | |||||| ||| || || Sbjct 66108 AGTCCGGGCATAAGGCCACGTTTCTTTAACCAAAATATCG-CGCAAAAACTCCCCGAGAA 66166 Query 24251 GAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAAC---CGGCGCTGTC 24307 || |||||||| || || ||||| | | | ||| || | | | || ||| Sbjct 66167 AAATATTCCTTCGACACAAGCGAAGGCGACTATACGTTCGGCAAAGGATTCCGAGCCGTC 66226 Query 24308 ATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGC 24367 ||||| | ||||| | ||||||||||| || ||||| ||||| || || || Sbjct 66227 G---ATCCAACGAAGTGCCCATTTGGCCTTCTTTTCAACGCAAGGAATTGTTTCGATTGC 66283 Query 24368 ATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATA 24427 |||||| ||| || ||||| || || | || | || | ||| |||||||| Sbjct 66284 GCGAAAGAGTCTGTTCTTCTCATTGGAGTCCTTTATGTAAGACTCGAGCAAGAGACTATA 66343 Query 24428 CATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGT 24487 ||| || || ||||| || || ||||| ||||| || ||||| || | || |||| Sbjct 66344 CATCTCGGAGTGAATATTCTCGATGGCGATTTGGAAACCGTAAAAGGCACGGGCTTCGGA 66403 Query 24488 AATCTGTACTTCTATACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGC 24547 |||||| |||||| | ||||| | || | ||| || || || || ||| || Sbjct 66404 AATCTGAACTTCTTTCATGAATCGACCGGCGAGATTCTCCAAAACAATGCCATCAGAAGC 66463 Query 24548 TGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCA 24607 || || || || | || || | || || | ||||| || || || | ||| Sbjct 66464 GGCGAAGAAGGCGAGAACGTGAGTGATGAAGTGACGCTCGTCGGGAGTGAGGGCTTCCCA 66523 Query 24608 ATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTT 24667 | | || || | ||||| ||| || || || | ||||| || || ||||||||||| Sbjct 66524 TTGACGGAGGTCCTGAGATAGATCGACCTCCTCGGCGGTCCAGAAGGAAGCCTCTGCCTT 66583 Query 24668 TTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAAT 24709 || ||||| | ||| || | | | ||||||||||| || || Sbjct 66584 CTTGTACATCTCCCAAATCTGAGGGTATTGAATTGGGAACAT 66625 >seq39070 Length=11651 Score = 168 bits (186), Expect = 8e-37 Identities = 397/597 (66%), Gaps = 2/597 (0%) Strand=Plus/Minus Query 24132 AAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTG 24191 || || || || || || || || || || |||| | |||||| ||||| || || || Sbjct 7937 AAGCAGGCAAAGTCACAATGGAGGCCTTCATCTCGAGAAATTAACTCGTTCGAGAAGGTT 7878 Query 24192 AGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCA-GAAAA 24250 | ||||||||| || || || || || ||||||||||| | | |||| ||| || || Sbjct 7877 AATCCGGGCATAAGCCCCCGTTTCTTTAGCCAAAATATCG-CACAAAAACTCCCCGAGAA 7819 Query 24251 GAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAACCGGCGCTGTCATG 24310 || ||||| || || |||||||| | | | || || | | | ||| Sbjct 7818 AAATATTCCCTCAACACAAGCAAAGGCGACGACACGCTCAGCAAAGGATTCCGAGCCATC 7759 Query 24311 TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATT 24370 ||||| | ||||||| ||||||||||| |||||||| || ||||| || ||| Sbjct 7758 GATCCAACGAAGTGCCCAATTGGCCTTCTTTTCAACACAAGGAATGGTCTCAATCGCACG 7699 Query 24371 AAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACAT 24430 |||||| | || || | ||| || | || | || | ||| ||||||||||| Sbjct 7698 AAAGAGCCTATGCTTCTCGTCTGAATCCTTTATGTAGGACTCGAGCAATAGACTATACAT 7639 Query 24431 TTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAAT 24490 || || ||||| || || || || |||||||| ||||| || | ||||| | ||| Sbjct 7638 CTCGGAGTGAATATTCTCGATAGCAATTTGAAAGCCGTAAAAGGCACGGGCCTCTGAAAT 7579 Query 24491 CTGTACTTCTATACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGC 24550 || |||||| | ||||| | || | ||| || || || || ||| || || Sbjct 7578 TTGAACTTCTTTCATGAATCGGCCGGCAAGATTCTCCAAAACAATACCATCAGAAGCGGC 7519 Query 24551 AAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATC 24610 |||||| || | || || | || || | ||||| || ||||| | ||| | Sbjct 7518 AAAAAAGGCGAGAACGTGAGTGATGAAGTGACGCTCGTCGGGAGTTAGGGCTTCCCATTG 7459 Query 24611 ATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTT 24670 || || | ||| | ||| ||||| || ||||||| || || ||||| ||||| || Sbjct 7458 GCGGAGGTCCTGAGAGAGATCGACTTCCTCGGCTGTCCAGAAAGAGGCCTCGGCCTTCTT 7399 Query 24671 ATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAATCTATTTGGATT 24727 ||||| | ||| || | | | ||||||||||| || ||| |||| | |||||| Sbjct 7398 GTACATTTCCCAAATCTGAGGGTATTGAATTGGGAACATACAGAATCGGTCTGGATT 7342 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593133058620960