Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Catharanthus_20roseus_20[genbank_20GCA_5F000949345.1_202015-03-06] 79,302 sequences; 522,653,749 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq72241 104 2e-17 seq65811 104 2e-17 seq73807 98.7 8e-16 seq71687 95.1 1e-14 seq42370 93.3 4e-14 >seq72241 Length=55963 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 |||||||| ||||| | || | ||| | || |||||||| ||||| || || ||||| Sbjct 40176 CCCCCTCGAAGCCTCAAGACAAGATGTAGGGTTGACTCCTTCTGAATATTGTAATCCGCA 40235 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 |||||| |||| |||||||| || || || |||| || | |||||| || || Sbjct 40236 AGGGTTCTACCGTCTTCCAGCTGCTTCCCGGCGAAAATTAGGCGCTGCTGATCAGGAGGA 40295 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | |||||||| || |||||| || || | | | | ||||||| ||| Sbjct 40296 ATTCCTTCCTTATCTTGAATCTTTGCCTTAACGTTGTCAATAGTATCAGAACTTTCCACC 40355 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || | || ||||| ||||| |||| ||||||||||| |||||||| Sbjct 40356 TCAAGAGTGATGGTTTTGCCTGTTAGAGTTTTGACAAAAATTTGCAT 40402 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 ||||| || ||||| | || | ||| | ||| || |||||||| || || || || || Sbjct 40404 CCCCCACGGAGCCTCAAGACGAGATGAAGAGTAGATTCCTTTTGGATATTGTAATCGGCG 40463 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 || || | ||||||||| ||| || || || | ||||| |||||||| ||| || Sbjct 40464 AGAGTCCTGCCGTCCTCCAACTGCTTCCCGGCGAAGATAAGCCTCTGCTGATCCGGAGGA 40523 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | || ||||| || ||||| || || | | | | ||||| ||| | Sbjct 40524 ATTCCCTCCTTATCCTGAATCTTGGCCTTGACGTTGTCAATTGTATCGGAACTCTCAACT 40583 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || | ||||| ||||||||||| | ||||| |||||||| ||||| Sbjct 40584 TCAAGAGTAATCGTCTTGCCGGTCAGAGTTTTAACAAATATCTGCAT 40630 >seq65811 Length=66007 Score = 104 bits (114), Expect = 2e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023 ||||||| || | ||||| ||||| |||||||| |||||||||| ||| || |||| Sbjct 54796 AGCACCAAGTGAAGGGTGGATTCCTTCTGAATGTTGTAGTCCGCCAAGGTGCGGCCGTCT 54855 Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083 || ||||| || || ||| | || | ||||||||||| || | || |||||||| Sbjct 54856 TCAAGCTGCTTTCCGGCAAAGATCAACCTCTGCTGGTCTGGTGGAATACCCTCCTTGTCT 54915 Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143 ||||| |||||| | | | | || || | ||| |||| ||| ||||| Sbjct 54916 TGAATCTTGGCTTTCACGTTGTCAATGGTGTCGGAGCTCTCAACCTCCAGGGTGATGGTT 54975 Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || ||||| | || |||||||| |||||||| Sbjct 54976 TTTCCGGTGAGAGTCTTGACAAAGATTTGCAT 55007 Score = 104 bits (114), Expect = 2e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023 ||||||| || | ||||| ||||||||||| || ||||| |||| ||| || ||||| Sbjct 55024 AGCACCAAGTGAAGGGTGGATTCCTTTTGAATATTGTAGTCGGCCAAGGTGCGGCCGTCC 55083 Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083 || ||||| || || || | || | ||| |||||||| || | |||||||||||| Sbjct 55084 TCGAGCTGCTTACCGGCGAAGATCAATCTTTGCTGGTCTGGTGGAATGCCTTCCTTGTCT 55143 Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143 || || || || | | ||| || || | ||| ||| | || |||||| Sbjct 55144 TGAATTTTAGCCTTTACGTTGTCGATGGTGTCGGAGCTCTCAACTTCGAGCGTGATGGTC 55203 Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || ||||| || || |||||||| |||||||| Sbjct 55204 TTTCCGGTCAAGGTCTTGACAAAGATTTGCAT 55235 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 20963 GAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTC 21022 ||| |||| || | || ||||||||||||||||| || ||||| |||||| | |||| Sbjct 55251 GAGGACCAAGTGGAGGGTAGACTCCTTTTGAATGTTGTAATCCGCAAGGGTTCTGCCGTC 55310 Query 21023 CTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTC 21082 ||| ||||| || || ||| | || || || |||||||| || | || ||||| || Sbjct 55311 CTCGAGCTGCTTTCCGGCAAAGATCAGCCTTTGCTGGTCTGGAGGAATTCCCTCCTTATC 55370 Query 21083 GGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGT 21142 ||||||| || || | ||| || || | ||| ||| | || ||||| Sbjct 55371 CTGGATCTTTGCCTTGACGTTATCGATGGTGTCGGAGCTCTCGACTTCGAGAGTGATGGT 55430 Query 21143 CTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 ||| ||||| | || || || || || ||||| Sbjct 55431 CTTTCCGGTAAGAGTCTTAACGAAGATCTGCAT 55463 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 20948 TCCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGC 21007 ||| || || || | ||| || | ||| | || |||||||| || || || ||||| || Sbjct 54353 TCCACCACGGAGACGGAGGACAAGATGGAGTGTTGACTCCTTCTGGATATTGTAGTCAGC 54412 Query 21008 CAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGG 21067 || || | || |||||||| || || ||| | || | ||||||||||| || Sbjct 54413 CAAAGTCCTTCCATCTTCCAGCTGCTTACCAGCAAAGATCAACCTCTGCTGGTCTGGTGG 54472 Query 21068 CACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGT 21127 | || |||||||| ||| ||| ||||| | | | | || ||| | |||| Sbjct 54473 AATTCCCTCCTTGTCTTGGATTTTTGCCTTCACATTGTCAATGGTGTCAGAGCTCTCCAC 54532 Query 21128 TTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATT 21176 |||| ||| || ||||| ||||| || || || ||||| || |||||| Sbjct 54533 CTCCAGGGTGATAGTCTTACCGGTCAAGGTCTTCACAAAGATCTGCATT 54581 >seq73807 Length=69832 Score = 98.7 bits (108), Expect = 8e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023 || |||| |||| ||||||||||| || || ||||||||||| ||||| | | ||| Sbjct 38715 AGAACCAAGTGCAGGGTGGACTCCTTCTGGATATTATAGTCCGCAAGGGTCCTGCCATCC 38774 Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083 || ||||| ||||| ||| | ||||| ||||| || || || | ||||||||||| Sbjct 38775 TCGAGCTGCTTGCCAGCAAAGATAAGCCTCTGTTGATCTGGAGGAATTCCTTCCTTGTCC 38834 Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143 || ||| |||||| | | | |||||| | |||| |||| || || ||| Sbjct 38835 TGAATTTTTGCTTTCACATTATCAATAGTATCTGAGCTCTCCACCTCCAAAGTGATTGTC 38894 Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || || || | || || || || |||||||| Sbjct 38895 TTCCCTGTAAGTGTCTTCACGAAAATTTGCAT 38926 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || || ||||| | || | ||| | |||||||||||||| |||||||| || || Sbjct 39840 CCACCCCGAAGCCTCAAGACAAGATGGAGGGTGGACTCCTTTTGTATGTTATAATCTGCA 39899 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 ||||| | | |||||||| |||||||| ||| | || | ||||||||| || ||| Sbjct 39900 AGGGTACGACCATCCTCCAGTTGTTTGCCAGCAAAGATCAATCTCTGCTGATCAGGGGGA 39959 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||||||||||| || ||| ||| || | | | ||| ||| ||| | Sbjct 39960 ATTCCTTCCTTGTCTTGAATTTTTGCTTTGACATTATCAATAGTGTCAGAACTCTCTACT 40019 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || | || || |||||||| || | || || ||||| || ||||| Sbjct 40020 TCGAGAGTTATTGTCTTGCCAGTGAGGGTCTTAACAAAGATCTGCAT 40066 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 20966 CACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTC 21025 ||||| ||||| ||| ||||||||||| |||||||| || || || || | ||||| Sbjct 38945 CACCAAATGCAGAGTTGACTCCTTTTGGATGTTATAATCAGCAAGTGTCCTACCATCCTC 39004 Query 21026 CAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGC 21085 |||||||| || ||| | || || | ||||||||| ||| | |||||| ||||| Sbjct 39005 AAGCTGTTTACCGGCAAATATCAGACGCTGCTGGTCAGGGGGAATGCCTTCTTTGTCTTG 39064 Query 21086 GATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTT 21145 ||||| || || | | | |||||| | || ||| | ||||| |||||| Sbjct 39065 AATCTTAGCCTTAACGTTATCAATCGTATCAGAGCTTTCTACTTCTAGGGTAACGGTCTT 39124 Query 21146 GCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || || | || |||||||| || ||||| Sbjct 39125 CCCAGTAAGAGTCTTGACAAAGATCTGCAT 39154 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 20979 GTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCC 21038 |||||||||||||| ||||| ||||| || ||||| || | |||||||| ||||| || Sbjct 39642 GTGGACTCCTTTTGTATGTTGTAGTCTGCAAGGGTACGGCCATCCTCCAGTTGTTTCCCT 39701 Query 21039 GCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTC 21098 || |||| | ||| |||||||| ||| | || |||||||| ||| || ||| Sbjct 39702 GCGAAAATCAATCTTTGCTGGTCTGGGGGAATTCCCTCCTTGTCCTGGATTTTGGCTTTG 39761 Query 21099 ACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGTT 21158 || | | | | || || | || ||| | ||| |||||||| || || | || Sbjct 39762 ACATTGTCAATTGTGTCTGAGCTTTCAACTTCAAGGGTGATGGTCTTTCCTGTCAGGGTC 39821 Query 21159 TTGACAAATATTTGCAT 21175 || ||||| |||||||| Sbjct 39822 TTAACAAAGATTTGCAT 39838 >seq71687 Length=64904 Score = 95.1 bits (104), Expect = 1e-14 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023 || |||| |||| || |||||||| || ||||| || ||||| | ||| | | ||| Sbjct 44701 AGGACCAGGTGCAGTGTCGACTCCTTCTGGATGTTGTAATCCGCTAAGGTCCTGCCTTCC 44760 Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083 || ||||| ||||| ||| | || || |||||||| ||| || | ||||||||| || Sbjct 44761 TCGAGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGATCCGGTGGGATGCCTTCCTTATCT 44820 Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143 |||||| ||||| | | | | ||||| || || || | |||||||||| Sbjct 44821 TGGATCTTCGCCTTCACATTGTCAATGGTATCGGAGGATTCAACCTCGAGGGTAATGGTC 44880 Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCATTTT 21178 || || || | ||||| || || || ||||| || Sbjct 44881 TTACCCGTCAGGGTTTTCACGAAGATCTGCATCTT 44915 >seq42370 Length=41228 Score = 93.3 bits (102), Expect = 4e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || |||| ||| | ||||||| ||| | ||||||||||||||||||||||| || || Sbjct 10660 CCACCTCTCAGACGCAGCACCAGATGAAGGGTGGACTCCTTTTGAATGTTATAATCAGCT 10601 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 || ||| | | || |||| ||| || || ||| | || | ||||||||||||| || Sbjct 10600 AGAGTTCTGCCATCTTCCAACTGCTTCCCGGCAAAGATCAATCTCTGCTGGTCCGGAGGA 10541 Query 21069 ACGCCTTCCTTGTC 21082 | |||||||| || Sbjct 10540 ATCCCTTCCTTATC 10527 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421851089386232