Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Catharanthus_20roseus_20[genbank_20GCA_5F000949345.1_202015-03-06] 79,302 sequences; 522,653,749 total letters Query= NC_001962.1 Length=128413 Score E Sequences producing significant alignments: (Bits) Value seq72241 95.1 1e-14 seq73986 87.8 1e-12 >seq72241 Length=55963 Score = 95.1 bits (104), Expect = 1e-14 Identities = 106/142 (75%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 25108 ATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCT 25167 || ||||| ||| ||| ||||||||||| | || |||||||||||||| |||| Sbjct 40101 ATGTCAAGGCAAAGATTCAGGATAAAGAAGGGATTCCTCCGGATCAACAAAGACTGATCT 40042 Query 25168 TTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAATATTCAAAAGGAAT 25227 |||| || || || |||||||| ||| | || ||||| || ||||||||||| | Sbjct 40041 TTGCCGGGAAGCAGTTGGAAGACGGTCGTACTCTAGCTGATTATAACATTCAAAAGGAGT 39982 Query 25228 CTACTCTTCACATGGTGTTACG 25249 | |||||||| ||||||| || Sbjct 39981 CCACTCTTCATCTGGTGTTGCG 39960 Score = 84.2 bits (92), Expect = 2e-11 Identities = 72/89 (81%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 25149 GATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGAT 25208 ||||| || || |||||||| || || || || ||||| || || ||| | |||||| Sbjct 40516 GATCAGCAGAGGCTTATCTTCGCCGGGAAGCAGTTGGAGGACGGCAGGACTCTCGCCGAT 40457 Query 25209 TACAATATTCAAAAGGAATCTACTCTTCA 25237 |||||||| |||||||||||||||||||| Sbjct 40456 TACAATATCCAAAAGGAATCTACTCTTCA 40428 >seq73986 Length=64159 Score = 87.8 bits (96), Expect = 1e-12 Identities = 102/135 (76%), Gaps = 2/135 (1%) Strand=Plus/Minus Query 25128 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAA 25187 |||||||||||| | || ||||| || ||||| || ||||| || || ||||||||| Sbjct 17171 GATAAAGAAGGTATTCCTCCCGATCAGCAGAGACTGATTTTTGCTGGTAAGCAATTGGAA 17112 Query 25188 GATTCCAAAACTATGGCCGATTACAATATTCAAAAGGAATCTACTCTTCACATGGTGTT- 25246 ||| | ||| |||| || || ||||| || || ||||| || |||||| |||| || Sbjct 17111 GATGGCCGTACTTTGGCTGACTATAATATCCAGAAAGAATCAACACTTCACTTGGTTTTG 17052 Query 25247 ACGATTACGAGGAGG 25261 | | ||| ||||||| Sbjct 17051 AGGCTTA-GAGGAGG 17038 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 410399767717028