Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Catharanthus_20roseus_20[genbank_20GCA_5F000949345.1_202015-03-06]
79,302 sequences; 522,653,749 total letters
Query= NC_001962.1
Length=128413
Score E
Sequences producing significant alignments: (Bits) Value
seq72241 95.1 1e-14
seq73986 87.8 1e-12
>seq72241
Length=55963
Score = 95.1 bits (104), Expect = 1e-14
Identities = 106/142 (75%), Gaps = 0/142 (0%)
Strand=Plus/Minus
Query 25108 ATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCT 25167
|| ||||| ||| ||| ||||||||||| | || |||||||||||||| ||||
Sbjct 40101 ATGTCAAGGCAAAGATTCAGGATAAAGAAGGGATTCCTCCGGATCAACAAAGACTGATCT 40042
Query 25168 TTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAATATTCAAAAGGAAT 25227
|||| || || || |||||||| ||| | || ||||| || ||||||||||| |
Sbjct 40041 TTGCCGGGAAGCAGTTGGAAGACGGTCGTACTCTAGCTGATTATAACATTCAAAAGGAGT 39982
Query 25228 CTACTCTTCACATGGTGTTACG 25249
| |||||||| ||||||| ||
Sbjct 39981 CCACTCTTCATCTGGTGTTGCG 39960
Score = 84.2 bits (92), Expect = 2e-11
Identities = 72/89 (81%), Gaps = 0/89 (0%)
Strand=Plus/Minus
Query 25149 GATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGAT 25208
||||| || || |||||||| || || || || ||||| || || ||| | ||||||
Sbjct 40516 GATCAGCAGAGGCTTATCTTCGCCGGGAAGCAGTTGGAGGACGGCAGGACTCTCGCCGAT 40457
Query 25209 TACAATATTCAAAAGGAATCTACTCTTCA 25237
|||||||| ||||||||||||||||||||
Sbjct 40456 TACAATATCCAAAAGGAATCTACTCTTCA 40428
>seq73986
Length=64159
Score = 87.8 bits (96), Expect = 1e-12
Identities = 102/135 (76%), Gaps = 2/135 (1%)
Strand=Plus/Minus
Query 25128 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAA 25187
|||||||||||| | || ||||| || ||||| || ||||| || || |||||||||
Sbjct 17171 GATAAAGAAGGTATTCCTCCCGATCAGCAGAGACTGATTTTTGCTGGTAAGCAATTGGAA 17112
Query 25188 GATTCCAAAACTATGGCCGATTACAATATTCAAAAGGAATCTACTCTTCACATGGTGTT- 25246
||| | ||| |||| || || ||||| || || ||||| || |||||| |||| ||
Sbjct 17111 GATGGCCGTACTTTGGCTGACTATAATATCCAGAAAGAATCAACACTTCACTTGGTTTTG 17052
Query 25247 ACGATTACGAGGAGG 25261
| | ||| |||||||
Sbjct 17051 AGGCTTA-GAGGAGG 17038
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 410399767717028
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |