Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Catharanthus_20roseus_20[genbank_20GCA_5F000949345.1_202015-03-06] 79,302 sequences; 522,653,749 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq72241 136 6e-27 seq42370 123 4e-23 seq73807 109 8e-19 seq73986 100 4e-16 >seq72241 Length=55963 Score = 136 bits (150), Expect = 6e-27 Identities = 168/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || ||| | ||||| || || || |||||||| ||| | ||| ||||| | Sbjct 40174 ATGCAGATTTTTGTCAAGACCCTTACTGGTAAAACTATTACTCTTGAGGTTGAAAGTTCT 40115 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||||| || |||| | || || ||||| ||||||||||| || || || |||||| Sbjct 40114 GATACCATCGATAATGTCAAGGCAAAGATTCAGGATAAAGAAGGGATTCCTCCGGATCAA 40055 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||||| || || ||||| || || || || || || |||| || ||| |||||||| Sbjct 40054 CAAAGACTGATCTTTGCCGGGAAGCAGTTGGAAGACGGTCGTACTCTAGCTGATTATAAC 39995 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 |||||||| || || ||| | ||| |||| || ||| | | |||||||| Sbjct 39994 ATTCAAAAGGAGTCCACTCTTCATCTGGTGTTGCGTCTGAGGGGTGGTAT 39945 Score = 107 bits (118), Expect = 3e-18 Identities = 164/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| ||| | || || |||||||||||||| || ||| | ||| | ||| | Sbjct 40402 ATGCAAATTTTTGTCAAAACTCTAACAGGCAAAACCATCACTCTTGAGGTGGAAAGTTCT 40343 Query 124599 GATACAATTTCTAAT-TTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||||| ||| || |||| || || ||||||||||| ||||| || || |||||||| Sbjct 40342 GATACTATTGACAACGTTAAGGCA-AAGATTCAAGATAAGGAAGGAATTCCTCCTGATCA 40284 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 || | || ||||| || || || || | || || || |||| | | ||||| || Sbjct 40283 GCAGCGCCTAATTTTCGCCGGGAAGCAGCTGGAAGACGGTAGAACCCTTGCGGATTACAA 40224 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 |||||| || || ||||| | ||| | || || | | ||||| ||||| Sbjct 40223 TATTCAGAAGGAGTCAACCCTACATCTTGTCTTGAGGCTTCGAGGGGGTAT 40173 >seq42370 Length=41228 Score = 123 bits (136), Expect = 4e-23 Identities = 166/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 |||||| || || | || || ||||||||||| || |||||| | ||| |||| Sbjct 9749 AATGCAGATCTTCGTGAAAACCCTAACAGGCAAGACCATAACTCTCGAGGTTGAGAGTTC 9808 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||||| ||| |||| | || || || |||||||| || ||||| || || ||||| Sbjct 9809 CGATACTATTGATAATGTCAAGGCTAAGATCCAAGATAAGGAGGGTATCCCTCCGGATCA 9868 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 || | ||||| || || || |||||||| ||||| | ||||| ||| |||||||| Sbjct 9869 GCAGCGCCTTATCTTCGCCGGCAAACAATTGGAGGACGGCCGAACCCTAGCCGATTATAA 9928 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || || || |||||||| | ||| | ||| | ||| | || |||||||| Sbjct 9929 CATACAGAAGGAATCAACCCTTCATCTTGTTCTTCGTCTCCGTGGTGGTAT 9979 Score = 100 bits (110), Expect = 4e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| |||||| | || || ||||| || || || || ||| | ||| |||| Sbjct 9978 ATGCAGATATTTGTTAAAACCCTAACCGGAAAGACGATTACTCTCGAGGTTGAGAGTTCC 10037 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || ||| || | || |||||||| ||||| ||||| || || || || || Sbjct 10038 GACACTATTGACAACGTCAAGGCTAAAATTCAGGATAAGGAAGGGATCCCTCCGGACCAG 10097 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 |||||||| || ||||| || || ||||| |||||| | || || | | ||||| ||| Sbjct 10098 CAAAGGCTCATCTTTGCTGGGAAGCAATTGGAGGATGGCCGGACTCTTGCCGATTACAAT 10157 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 ||||||||||| || || | ||| | || || | | || ||||| || Sbjct 10158 ATTCAAAAAGAGTCGACCCTTCATCTCGTCTTGAGGCTTCGCGGTGGGAT 10207 Score = 91.5 bits (100), Expect = 2e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| ||| | || || || || || || || || || | ||| | || | Sbjct 10206 ATGCAAATCTTTGTTAAAACTCTGACTGGTAAGACGATTACCTTGGAGGTCGAGAGTTCT 10265 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||||||||| ||| | || ||| ||||||||||| || || || || || ||||| Sbjct 10266 GATACAATTGATAACGTTAAGGCGAAGATTCAAGATAAGGAGGGGATTCCTCCGGATCAG 10325 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || | || || ||||| ||||| || || |||||| || |||| || | ||||| || Sbjct 10326 CAGCGCCTGATCTTTGCCGGAAAGCAGTTGGAGGATGGTAGAACCTTGGCTGATTACAAC 10385 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || || || || || ||| | ||| | || || | | || ||||| || Sbjct 10386 ATCCAGAAGGAGTCGACTCTACATCTCGTCTTGAGGCTTCGCGGTGGGAT 10435 >seq73807 Length=69832 Score = 109 bits (120), Expect = 8e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || ||| | ||||| || || ||||| || |||||| | || | || | Sbjct 40066 ATGCAGATCTTTGTTAAGACCCTCACTGGCAAGACAATAACTCTCGAAGTAGAGAGTTCT 40007 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || ||| |||| | ||| ||||||||||| || ||||| || || |||||||| Sbjct 40006 GACACTATTGATAATGTCAAAGCAAAAATTCAAGACAAGGAAGGAATTCCCCCTGATCAG 39947 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || || | || ||||| || |||||| | |||||| |||| || | | ||||||||| Sbjct 39946 CAGAGATTGATCTTTGCTGGCAAACAACTGGAGGATGGTCGTACCCTTGCAGATTATAAC 39887 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || ||||| || || || | ||| | || || | | || ||||| || Sbjct 39886 ATACAAAAGGAGTCCACCCTCCATCTTGTCTTGAGGCTTCGGGGTGGCAT 39837 Score = 95.1 bits (104), Expect = 2e-14 Identities = 161/231 (70%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAA-GCAAA 124597 |||||||| || | ||||| || ||||| || || || || | || | ||| || | Sbjct 39610 ATGCAAATCTTCGTTAAGACCCTGACAGGAAAGACCATCACCCTGGAAGTCGAAAGCTCA 39551 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 || |||||| ||| | ||| |||||||| || || || || || || |||||||| Sbjct 39550 -GACACAATTGACAATGTCAAAGCCAAAATTCAGGACAAGGAGGGAATTCCCCCTGATCA 39492 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 ||| | | |||||||| || ||||| | |||||| | || || | | ||| || || Sbjct 39491 GCAACGTTTGATTTTTGCTGGGAAACAGCTTGAGGATGGCCGTACCCTTGCAGACTACAA 39432 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 ||||||||| || || || | || | ||||| || | || ||||| || Sbjct 39431 TATTCAAAAGGAGTCCACCCTTCACCTTGTTTTGCGACTCCGTGGTGGCAT 39381 Score = 84.2 bits (92), Expect = 3e-11 Identities = 139/198 (70%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAA-GCAAA 124597 ||||| || ||| | ||||| || ||||| || || || || | || ||||| || | Sbjct 39382 ATGCAGATCTTTGTCAAGACTCTGACAGGAAAGACCATTACCCTTGAAGTTGAAAGCTCA 39323 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 || |||||| || | ||| |||||||| || || || || || || || || || Sbjct 39322 -GACACAATTGACAACGTTAAAGCCAAAATTCAGGACAAGGAGGGAATTCCCCCAGACCA 39264 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 ||| | | ||||||||||| |||||| | |||||| | || || | | ||| || || Sbjct 39263 GCAACGCTTGATTTTTGCAGGGAAACAACTTGAGGATGGCCGTACCCTGGCAGACTACAA 39204 Query 124718 TATTCAAAAAGAATCAAC 124735 ||| ||||| || || || Sbjct 39203 TATCCAAAAGGAGTCCAC 39186 >seq73986 Length=64159 Score = 100 bits (110), Expect = 4e-16 Identities = 96/123 (78%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 124628 TCAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAACAATT 124687 ||| |||||||||||||| || || ||||| || || || |||||||| || || ||||| Sbjct 17175 TCAGGATAAAGAAGGTATTCCTCCCGATCAGCAGAGACTGATTTTTGCTGGTAAGCAATT 17116 Query 124688 AGAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAACTTTGCATTTGGT 124747 || ||| | || || || | || |||||||| || ||||||||||| | || ||||| Sbjct 17115 GGAAGATGGCCGTACTTTGGCTGACTATAATATCCAGAAAGAATCAACACTTCACTTGGT 17056 Query 124748 TTT 124750 ||| Sbjct 17055 TTT 17053 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 754707135353600