Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Catharanthus_20roseus_20[genbank_20GCA_5F000949345.1_202015-03-06] 79,302 sequences; 522,653,749 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq53817 116 4e-21 seq65811 113 5e-20 seq73807 109 6e-19 seq72241 98.7 1e-15 seq67817 93.3 5e-14 seq64144 87.8 2e-12 seq42370 86.0 7e-12 seq55286 84.2 2e-11 >seq53817 Length=15024 Score = 116 bits (128), Expect = 4e-21 Identities = 145/196 (74%), Gaps = 2/196 (1%) Strand=Plus/Plus Query 42993 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 43052 ||||| || || ||||| ||||| ||||| | |||| || ||||||||||| ||||| Sbjct 3666 TCCTTCTGGATGTTGTAGTCAGCTAGAGTTCTGCCGTCTTCGAGCTGCTTACCGGCGAAG 3725 Query 43053 ATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGT 43111 ||||| ||||||||||| | || | || |||||||||| ||| |||| | |||| | Sbjct 3726 ATGAGACGCTGCTGGTCCGGTGGGATGCCCTCCTTGTCC-TGAATTTTGGCCTTGACATT 3784 Query 43112 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 43171 | | || || ||||| || || | |||||||| || ||||| || || || || Sbjct 3785 GTCAATGGTATCCGAGGATTCGACCTCAAGGGTGATGGTCTTCCCCGTGAGGGTTTTCAC 3844 Query 43172 AAAGATTTGCATTTTT 43187 ||||| ||||||||| Sbjct 3845 GAAGATCTGCATTTTT 3860 >seq65811 Length=66007 Score = 113 bits (124), Expect = 5e-20 Identities = 166/231 (72%), Gaps = 8/231 (3%) Strand=Plus/Plus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 ||||| | | ||| | |||||| || | ||| ||||||||||||||||| || ||| Sbjct 55009 CCTCCACGGAGACGAAGCACCAAGTGAAGGGTGGATTCCTTTTGAATATTGTAGTCGGCC 55068 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 | || || |||| || ||||||||||| ||||| || | || |||||||| | || Sbjct 55069 AAGGTGCGGCCGTCCTCGAGCTGCTTACCGGCGAAGATCAATCTTTGCTGGTCTGGTGGA 55128 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTC---GCTCGATTC 43132 | || ||||||| | ||| |||| | | ||| | | | ||||| |||| || Sbjct 55129 ATGCCTTCCTTGT-CTTGAATTTTAGCCTTTACGTTGTCGATGGTGTCGGAGCTC---TC 55184 Query 43133 CACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || |||| ||||||||| || || || | ||||| |||||||||||||| Sbjct 55185 AACTTCGAGCGTGATGGTCTTTCCGGTCAAGGTCTTGACAAAGATTTGCAT 55235 Score = 96.9 bits (106), Expect = 4e-15 Identities = 160/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 ||||| || ||||| | ||||| || | || |||||||||||| |||||||| || Sbjct 55237 CCTCCCCTCAAACGGAGGACCAAGTGGAGGGTAGACTCCTTTTGAATGTTGTAATCCGCA 55296 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 || || | |||| || |||||||| || || || || || | |||||||| | || Sbjct 55297 AGGGTTCTGCCGTCCTCGAGCTGCTTTCCGGCAAAGATCAGCCTTTGCTGGTCTGGAGGA 55356 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTC---GCTCGATTCC 43133 | | |||||| ||| ||| ||| |||| | | | ||||| |||| || Sbjct 55357 ATTCCCTCCTTATCCTGGATCTTTGCCTTGACGTTATCGATGGTGTCGGAGCTC---TCG 55413 Query 43134 ACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || |||| |||||||| || || || || ||||| || ||||| ||||| Sbjct 55414 ACTTCGAGAGTGATGGTCTTTCCGGTAAGAGTCTTAACGAAGATCTGCAT 55463 Score = 93.3 bits (102), Expect = 5e-14 Identities = 139/196 (71%), Gaps = 6/196 (3%) Strand=Plus/Plus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || |||||||| ||||||| ||||| | || || |||||||||||||| || Sbjct 54389 CTCCTTCTGGATATTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTACCAGCAAA 54448 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 || | | ||||||||| | || | | ||||||||| ||||||| || | | Sbjct 54449 GATCAACCTCTGCTGGTCTGGTGGAATTCCCTCCTTGTCTTGGATTTTTGCCTTCACATT 54508 Query 43112 CGCCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTT 43168 | | ||||| |||| ||||| || | ||||| || || || || | ||||| Sbjct 54509 GTCAATGGTGTCAGAGCTC---TCCACCTCCAGGGTGATAGTCTTACCGGTCAAGGTCTT 54565 Query 43169 TACAAAGATTTGCATT 43184 |||||||| |||||| Sbjct 54566 CACAAAGATCTGCATT 54581 Score = 93.3 bits (102), Expect = 5e-14 Identities = 155/220 (70%), Gaps = 8/220 (4%) Strand=Plus/Plus Query 42968 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 43027 ||| | |||||| || | ||| ||||| ||||| ||||| || |||| || || | Sbjct 54792 ACGAAGCACCAAGTGAAGGGTGGATTCCTTCTGAATGTTGTAGTCCGCCAAGGTGCGGCC 54851 Query 43028 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTT 43087 ||| || |||||||| || || || || | | ||||||||| | || | | |||||| Sbjct 54852 GTCTTCAAGCTGCTTTCCGGCAAAGATCAACCTCTGCTGGTCTGGTGGAATACCCTCCTT 54911 Query 43088 GTCCATGATTTTTTGTTTGAGCGTCGCCACCG-TGTCG---CTCGATTCCACATCGACCG 43143 ||| ||| | || | || ||| | || | ||||| ||| || || || | | Sbjct 54912 GTCT-TGAATCTTGGCTTTCACGTTGTCAATGGTGTCGGAGCTC---TCAACCTCCAGGG 54967 Query 43144 TGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 |||||||||| || || || ||||| |||||||||||||| Sbjct 54968 TGATGGTTTTTCCGGTGAGAGTCTTGACAAAGATTTGCAT 55007 >seq73807 Length=69832 Score = 109 bits (120), Expect = 6e-19 Identities = 165/231 (71%), Gaps = 8/231 (3%) Strand=Plus/Plus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 ||||| || ||||||||||||||||||| || ||||||||| || || |||||||| Sbjct 38928 CCTCCCCTCAAACGCAACACCAAATGCAGAGTTGACTCCTTTTGGATGTTATAATCAGCA 38987 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 || |||| | || || ||||| ||||| || ||||| || ||||||||||| | || Sbjct 38988 AGTGTCCTACCATCCTCAAGCTGTTTACCGGCAAATATCAGACGCTGCTGGTCAGGGGGA 39047 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCG-TCGCCACCGTGTC---GCTCGATTC 43132 | || || |||| | ||| | || | | | || | | | ||| || ||| ||| Sbjct 39048 ATGCCTTCTTTGT-CTTGAATCTTAGCCTTAACGTTATCAATCGTATCAGAGCT---TTC 39103 Query 43133 CACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || || | || | ||| || || || || ||||| |||||||| ||||| Sbjct 39104 TACTTCTAGGGTAACGGTCTTCCCAGTAAGAGTCTTGACAAAGATCTGCAT 39154 Score = 91.5 bits (100), Expect = 2e-13 Identities = 154/219 (70%), Gaps = 8/219 (4%) Strand=Plus/Plus Query 42969 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 43028 ||||| || | || | ||| |||||||||||||||||| || || || || || | Sbjct 39396 CGCAAAACAAGGTGAAGGGTGGACTCCTTTTGAATATTGTAGTCTGCAAGGGTACGGCCA 39455 Query 43029 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 43088 || || ||||| || ||||| || || | || ||||| || | || | | ||||||| Sbjct 39456 TCCTCAAGCTGTTTCCCAGCAAAAATCAAACGTTGCTGATCAGGGGGAATTCCCTCCTTG 39515 Query 43089 TCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTC---GCTCGATTCCACATCGACCGT 43144 ||| ||| |||| | ||||| | | | ||||| ||| ||| || || | || Sbjct 39516 TCC-TGAATTTTGGCTTTGACATTGTCAATTGTGTCTGAGCT---TTCGACTTCCAGGGT 39571 Query 43145 GATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 |||||| || || || || ||||| || ||||||||||| Sbjct 39572 GATGGTCTTTCCTGTCAGGGTCTTAACGAAGATTTGCAT 39610 Score = 89.7 bits (98), Expect = 6e-13 Identities = 150/216 (69%), Gaps = 6/216 (3%) Strand=Plus/Plus Query 42971 CAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTC 43030 ||| || | ||| | ||| ||||||||| || ||||| || || || || || | || Sbjct 39626 CAAGACAAGATGGAGGGTGGACTCCTTTTGTATGTTGTAGTCTGCAAGGGTACGGCCATC 39685 Query 43031 ATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTC 43090 || || || || || ||||| || | || |||||||| | || | | ||||||||| Sbjct 39686 CTCCAGTTGTTTCCCTGCGAAAATCAATCTTTGCTGGTCTGGGGGAATTCCCTCCTTGTC 39745 Query 43091 CATGATTTTTTGTTTGAGCGTCGCCACCGTGTC---GCTCGATTCCACATCGACCGTGAT 43147 | |||||| ||||| | | | ||||| ||| ||| || || | ||||| Sbjct 39746 CTGGATTTTGGCTTTGACATTGTCAATTGTGTCTGAGCT---TTCAACTTCAAGGGTGAT 39802 Query 43148 GGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 ||| || || || || ||||| |||||||||||||| Sbjct 39803 GGTCTTTCCTGTCAGGGTCTTAACAAAGATTTGCAT 39838 >seq72241 Length=55963 Score = 98.7 bits (108), Expect = 1e-15 Identities = 139/193 (72%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| |||||||||||||| || || || | |||| || |||||||| || ||||| Sbjct 40211 CTCCTTCTGAATATTGTAATCCGCAAGGGTTCTACCGTCTTCCAGCTGCTTCCCGGCGAA 40270 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 || || |||||||| || | || | | ||||| | | ||| | |||| | | ||| Sbjct 40271 AATTAGGCGCTGCTGATCAGGAGGAATTCCTTCCTTAT-CTTGAATCTTTGCCTTAACGT 40329 Query 43112 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 43170 | | | || || |||||| || | |||||||||||||| ||||| || || | Sbjct 40330 TGTCAATAGTATCAGAACTTTCCACCTCAAGAGTGATGGTTTTGCCTGTTAGAGTTTTGA 40389 Query 43171 CAAAGATTTGCAT 43183 |||| |||||||| Sbjct 40390 CAAAAATTTGCAT 40402 Score = 93.3 bits (102), Expect = 5e-14 Identities = 87/111 (78%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 42981 TGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGC 43040 |||| ||| |||||| || |||||||||||||||||||| ||| | || || |||||| Sbjct 39744 TGCAGGGTGGACTCCTTCTGGATATTGTAATCAGCCAGAGTACGCCCATCTTCAAGCTGC 39803 Query 43041 TTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCC 43091 || ||||||||||| || | |||||| || | || | | ||| |||||| Sbjct 39804 TTTCCAGCGAATATAAGCCTCTGCTGATCCGGGGGAATTCCCTCTTTGTCC 39854 >seq67817 Length=4127 Score = 93.3 bits (102), Expect = 5e-14 Identities = 137/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 42993 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 43052 ||||| || || ||||| ||||| || || | | ||| || || ||||| || ||||| Sbjct 1423 TCCTTCTGGATGTTGTAGTCAGCTAGTGTTCTGTAGTCTTCGAGTTGCTTCCCGGCGAAG 1482 Query 43053 ATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 43112 ||||| ||||||||||| | || | || |||||||||| ||||| |||| | Sbjct 1483 ATGAGACGCTGCTGGTCTGGTGGGATGCCCTCCTTGTCCGAAATTTTGGCCTTGACATTG 1542 Query 43113 GCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACA 43172 | | || | | ||||| || || | |||||||| || ||||| || || || || Sbjct 1543 TCAATGGTATTGGAGGATTCGACCTCAAGGGTGATGGTCTTCCCCGTGAGGGTTTTCACG 1602 Query 43173 AAGATTTGCATTTT 43186 ||||| | |||||| Sbjct 1603 AAGATCTACATTTT 1616 >seq64144 Length=11632 Score = 87.8 bits (96), Expect = 2e-12 Identities = 138/195 (71%), Gaps = 2/195 (1%) Strand=Plus/Plus Query 42993 TCCTTTTGAATATTGTAATCAGCCAGAGTCC-GCTCGTCATCTAGCTGCTTACCAGCGAA 43051 ||||| || || ||||| ||||| || || | ||| ||| || || ||||| || ||||| Sbjct 9130 TCCTTATGGATGTTGTAGTCAGCTAGTGTTCTGCT-GTCTTCGAGTTGCTTCCCGGCGAA 9188 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 | ||| ||||||||||| || | || ||||||||| ||||| |||| | Sbjct 9189 GAGGAGACGCTGCTGGTCTAGTGGGATGCCGTCCTTGTCCGAAATTTTGGCCTTGACATT 9248 Query 43112 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 43171 | | || ||| ||||| || || | |||||||| || ||||| || || || || Sbjct 9249 GTCAATGGTATCGGAGGATTCAACCTCAAGAGTGATGGTCTTCCCCGTGAGGGTTTTCAC 9308 Query 43172 AAAGATTTGCATTTT 43186 ||||| |||||||| Sbjct 9309 GAAGATCTGCATTTT 9323 >seq42370 Length=41228 Score = 86.0 bits (94), Expect = 7e-12 Identities = 141/197 (72%), Gaps = 10/197 (5%) Strand=Plus/Minus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 ||| ||||||||||||||||| || |||||||| | || || | ||||| ||||| || Sbjct 10169 CTCTTTTTGAATATTGTAATCGGCAAGAGTCCGGCCATCCTCCAATTGCTTCCCAGCAAA 10110 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCG 43110 ||||| | |||||||| | || | | ||||| ||| ||| |||| | |||| || Sbjct 10109 GATGAGCCTTTGCTGGTCCGGAGGGATCCCTTCCTTATCC-TGAATTTTAGCCTTGA-CG 10052 Query 43111 TCG-CCACCGTGTCG---CTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTC 43166 | | | | |||||| ||| || || |||| || || || || || ||||| || Sbjct 10051 TTGTCAATAGTGTCGGAACTC---TCAACCTCGAGAGTAATCGTCTTTCCGGTTAGGGTT 9995 Query 43167 TTTACAAAGATTTGCAT 43183 || ||||| || ||||| Sbjct 9994 TTAACAAATATCTGCAT 9978 Score = 86.0 bits (94), Expect = 7e-12 Identities = 83/107 (78%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 42993 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 43052 ||||| ||||||||||||||||||| ||| || | || || |||||||| |||||||| Sbjct 10852 TCCTTCTGAATATTGTAATCAGCCAAAGTACGTCCATCCTCGAGCTGCTTCCCAGCGAAG 10793 Query 43053 ATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTT 43099 ||||| | |||||| || | || | | |||||| ||| ||| || Sbjct 10792 ATGAGCCTCTGCTGATCCGGGGGAATCCCCTCCTTATCCTGGATCTT 10746 >seq55286 Length=173584 Score = 84.2 bits (92), Expect = 2e-11 Identities = 65/76 (86%), Gaps = 1/76 (1%) Strand=Plus/Plus Query 60057 AAAAATTT-TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATA 60115 |||||||| || || || ||| ||||||||| |||| |||||||||||||||| ||| Sbjct 96785 AAAAATTTATCGCCGTTGCCGGGGATCGAACCCGGGTCACCCGCGTGACAGGCGGGAATA 96844 Query 60116 CTCACCACTATACTAC 60131 |||||||||||||||| Sbjct 96845 CTCACCACTATACTAC 96860 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571250771508560