Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Catharanthus_20roseus_20[genbank_20GCA_5F000949345.1_202015-03-06] 79,302 sequences; 522,653,749 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq73986 118 2e-21 seq73807 98.7 1e-15 seq42370 98.7 1e-15 seq72241 89.7 8e-13 >seq73986 Length=64159 Score = 118 bits (130), Expect = 2e-21 Identities = 110/140 (79%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 146048 GTTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCT 146107 ||||| |||||||| || || ||||| || | || |||||||| |||||||| || Sbjct 17035 GTTCCTCCTCTAAGCCTCAAAACCAAGTGAAGTGTTGATTCTTTCTGGATATTATAGTCA 17094 Query 146108 GAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGA 146167 | | ||| | || ||| || ||||| || ||||||||||||| ||| |||||||| ||| Sbjct 17095 GCCAAAGTACGGCCATCTTCCAATTGCTTACCAGCAAAAATCAGTCTCTGCTGATCGGGA 17154 Query 146168 GGAATTCCTTCTTTATCTTG 146187 ||||| ||||||||||| || Sbjct 17155 GGAATACCTTCTTTATCCTG 17174 >seq73807 Length=69832 Score = 98.7 bits (108), Expect = 1e-15 Identities = 104/137 (76%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 ||||| | ||| || || || | ||| | || || || || ||| |||||||||| | Sbjct 39840 CCACCCCGAAGCCTCAAGACAAGATGGAGGGTGGACTCCTTTTGTATGTTATAATCTGCA 39899 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 || || | | ||| || | |||||| |||||||| |||||||| |||||||| || ||| Sbjct 39900 AGGGTACGACCATCCTCCAGTTGTTTGCCAGCAAAGATCAATCTCTGCTGATCAGGGGGA 39959 Query 146171 ATTCCTTCTTTATCTTG 146187 |||||||| || ||||| Sbjct 39960 ATTCCTTCCTTGTCTTG 39976 Score = 89.7 bits (98), Expect = 8e-13 Identities = 151/227 (67%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 ||||| | |||||| || || | ||| | || || || || ||| || || |||| | Sbjct 39612 CCACCACGAAGTCTCAAGACAAGATGGAGGGTGGACTCCTTTTGTATGTTGTAGTCTGCA 39671 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 || || | || ||| || | |||||| || || ||||||||||||||||| || || ||| Sbjct 39672 AGGGTACGGCCATCCTCCAGTTGTTTCCCTGCGAAAATCAATCTTTGCTGGTCTGGGGGA 39731 Query 146171 ATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTACT 146230 ||||| || || || || || ||||| ||||| ||| Sbjct 39732 ATTCCCTCCTTGTCCTGGATTTTGGCTTTGACATTGTCAATTGTGTCTGAGCTTTCAACT 39791 Query 146231 TCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCAT 146277 || || ||||| || || ||||| | || |||| || |||||||| Sbjct 39792 TCAAGGGTGATGGTCTTTCCTGTCAGGGTCTTAACAAAGATTTGCAT 39838 >seq42370 Length=41228 Score = 98.7 bits (108), Expect = 1e-15 Identities = 106/138 (77%), Gaps = 2/138 (1%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCTGA 146109 |||||||| || | | |||| ||| | || || || ||| || || |||||||| | Sbjct 10660 CCACCTCTCAGACGCAGCACCAGATGAAGGGTGGACTCCTTTTGA-ATGTTATAATCAGC 10602 Query 146110 AAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGG 146169 |||||||||| ||| || || || || || ||||| |||||||| ||||| |||||||| Sbjct 10601 TAGAGTTCTGCCATCTTCCAACTGCTTCCCGGCAAAGATCAATCTCTGCTGGTCCGGAGG 10542 Query 146170 AATTCCTTCTTTATCTTG 146187 ||| ||||| ||||| || Sbjct 10541 AATCCCTTCCTTATCCTG 10524 >seq72241 Length=55963 Score = 89.7 bits (98), Expect = 8e-13 Identities = 104/138 (75%), Gaps = 2/138 (1%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCTGA 146109 ||||| || || | || |||| ||| | ||| || || ||| || || |||||||| | Sbjct 39948 CCACCCCTCAGACGCAACACCAGATGAAGAGTGGACTCCTTTTGA-ATGTTATAATCAGC 40006 Query 146110 AAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGG 146169 ||||| | | || || || || || || ||||| |||| |||||| ||||||||||| Sbjct 40007 TAGAGTACGACCGTCTTCCAACTGCTTCCCGGCAAAGATCAGTCTTTGTTGATCCGGAGG 40066 Query 146170 AATTCCTTCTTTATCTTG 146187 ||| ||||||||||| || Sbjct 40067 AATCCCTTCTTTATCCTG 40084 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 742789360867840