Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Catharanthus_20roseus_20[genbank_20GCA_5F000949345.1_202015-03-06] 79,302 sequences; 522,653,749 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq53817 114 8e-21 seq67817 107 1e-18 seq55661 107 1e-18 seq64144 98.7 6e-16 seq65811 96.9 2e-15 seq25273 95.1 8e-15 seq72241 91.5 1e-13 seq71687 87.8 1e-12 seq42370 86.0 4e-12 >seq53817 Length=15024 Score = 114 bits (126), Expect = 8e-21 Identities = 143/194 (74%), Gaps = 4/194 (2%) Strand=Plus/Plus Query 34198 TTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAA 34257 ||| ||||| ||||||||||| | || | | |||| || | |||||| || ||||| Sbjct 3665 TTCCTTCTGGATGTTGTAGTCAGCTAGAGTTCTGCCGTCTTCGAGCTGCTTACCGGCGAA 3724 Query 34258 AATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTG--CTTTAGA 34315 ||||| ||||||||||| || | || ||||||||| || ||||| ||| | | Sbjct 3725 GATGAGACGCTGCTGGTCCGGTGGGATGCCCTCCTTGTC--CTGAATTTTGGCCTTGACA 3782 Query 34316 TCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTC 34375 | | | || | ||| | |||||||| || | |||||||| || || ||||| |||||| Sbjct 3783 TTGTCAATGGTATCCGAGGATTCGACCTCAAGGGTGATGGTCTTCCCCGTGAGGGTTTTC 3842 Query 34376 ACAAAGATCTGCAT 34389 || ||||||||||| Sbjct 3843 ACGAAGATCTGCAT 3856 >seq67817 Length=4127 Score = 107 bits (118), Expect = 1e-18 Identities = 139/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 34198 TTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAA 34257 ||| ||||| ||||||||||| | || | || ||| || | ||||| || ||||| Sbjct 1422 TTCCTTCTGGATGTTGTAGTCAGCTAGTGTTCTGTAGTCTTCGAGTTGCTTCCCGGCGAA 1481 Query 34258 AATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATC 34317 ||||| ||||||||||| || | || ||||||||| | || || ||| | || Sbjct 1482 GATGAGACGCTGCTGGTCTGGTGGGATGCCCTCCTTGTCCGAAATTTTGGCCTTGACATT 1541 Query 34318 GGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCAC 34377 | | || | || || |||||||| || | |||||||| || || ||||| |||||||| Sbjct 1542 GTCAATGGTATTGGAGGATTCGACCTCAAGGGTGATGGTCTTCCCCGTGAGGGTTTTCAC 1601 Query 34378 AAAGATCTGCAT 34389 ||||||| ||| Sbjct 1602 GAAGATCTACAT 1613 >seq55661 Length=20824 Score = 107 bits (118), Expect = 1e-18 Identities = 142/194 (73%), Gaps = 5/194 (3%) Strand=Plus/Minus Query 34198 TTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAA 34257 ||| ||||| |||||||||| | || | ||| || || | |||||| | ||||| Sbjct 2570 TTCCTTCTGGATGTTGTAGTTAGCTAGTGTTCTGTCATCTTCGAGCTGCTTCTCGGCGAA 2511 Query 34258 AATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTG--CTTTAGA 34315 ||||| |||||||| || ||| | |||||||||||| || ||||| ||| | | Sbjct 2510 GATGAGACGCTGCTGTCCGGTGGG-ATGCTCTCCTTGTC--CTGAATTTTGGCCTTGACA 2454 Query 34316 TCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTC 34375 | | | || | ||||| |||||||| || | |||||||| || || |||| |||||| Sbjct 2453 TTGTCAATGGTATCGGAGGATTCGACCTCAAAGGTGATGGTCTTTCCCATGAGGGTTTTC 2394 Query 34376 ACAAAGATCTGCAT 34389 || ||||||||||| Sbjct 2393 ACGAAGATCTGCAT 2380 >seq64144 Length=11632 Score = 98.7 bits (108), Expect = 6e-16 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 34198 TTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAA 34257 ||| || || ||||||||||| | || | | ||| || | ||||| || ||||| Sbjct 9129 TTCCTTATGGATGTTGTAGTCAGCTAGTGTTCTGCTGTCTTCGAGTTGCTTCCCGGCGAA 9188 Query 34258 AATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATC 34317 | ||| ||||||||||| | || | || |||||||| | || || ||| | || Sbjct 9189 GAGGAGACGCTGCTGGTCTAGTGGGATGCCGTCCTTGTCCGAAATTTTGGCCTTGACATT 9248 Query 34318 GGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCAC 34377 | | || | ||||| ||||| || || | |||||||| || || ||||| |||||||| Sbjct 9249 GTCAATGGTATCGGAGGATTCAACCTCAAGAGTGATGGTCTTCCCCGTGAGGGTTTTCAC 9308 Query 34378 AAAGATCTGCAT 34389 ||||||||||| Sbjct 9309 GAAGATCTGCAT 9320 >seq65811 Length=66007 Score = 96.9 bits (106), Expect = 2e-15 Identities = 153/214 (71%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACA-GCTGACGGTCGTC 34236 ||||||| ||| | || ||| ||||| ||||||||||| | || | || ||| |||| Sbjct 54796 AGCACCAAGTGAAGGGTGGATTCCTTCTGAATGTTGTAGTCCGCCAAGGTG-CGGCCGTC 54854 Query 34237 GTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTC 34296 || | |||||| || || || || | || ||||||||| || | | ||||||||| Sbjct 54855 TTCAAGCTGCTTTCCGGCAAAGATCAACCTCTGCTGGTCTGGTGGAATACCCTCCTTGTC 54914 Query 34297 GGCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGG 34355 ||||| ||||| | | | | || | |||| || || |||| ||||||| Sbjct 54915 TTGAATCTTG-GCTTTCACGTTGTCAATGGTGTCGGAGCTCTCAACCTCCAGGGTGATGG 54973 Query 34356 TTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||| ||||||||||| || |||||||| ||||| Sbjct 54974 TTTTTCCGGTGAGAGTCTTGACAAAGATTTGCAT 55007 >seq25273 Length=6599 Score = 95.1 bits (104), Expect = 8e-15 Identities = 147/208 (71%), Gaps = 4/208 (2%) Strand=Plus/Minus Query 34184 AGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAAC 34243 ||||| | ||| ||| ||||| || |||||||| | || | | ||| || | | Sbjct 391 AGGTGAAGAGTGGATTCCTTCTGGATATTGTAGTCAGGTAGTGTTCTGCTGTCTTCGAGC 332 Query 34244 TGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATC 34303 ||||| || | ||| ||||| || |||||||| || | || |||||| || || Sbjct 331 TGCTTCCCGGAGAAGATGAGACGTTGCTGGTCCGGTGGGATGCCCTCCTTCTC--CTGAA 274 Query 34304 TTTTG--CTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGC 34361 ||||| ||| | || | | || | |||| |||||||| || | |||||||| || | Sbjct 273 TTTTGGCCTTGACATTGTCAATGGTATCGAAGGATTCGACCTCAAGGGTGATGGTCTTCC 214 Query 34362 CGGTGAGAGTTTTCACAAAGATCTGCAT 34389 | ||||| |||||||| ||||||||||| Sbjct 213 CCGTGAGGGTTTTCACGAAGATCTGCAT 186 >seq72241 Length=55963 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || ||||| || || || || || || | |||| || ||||| || || || |||| Sbjct 40632 CCACCGCGGAGTCTGAGGACAAGATGGAGAGTAGACTCCTTCTGGATATTATAATCGGCG 40691 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || ||| |||| || | || ||||| ||||| || || |||||||| ||| || Sbjct 40692 AGGGTTCGGCCGTCCTCGAGTTGTTTGCCGGCGAAGATTAGGCGCTGCTGATCGGGAGGG 40751 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | | ||||||||| ||||| ||| | || | | || | ||||| ||||| Sbjct 40752 ATTCCCTCCTTGTCTTGAATCTTAGCCTTGACATTGTCGATTGTATCGGAGCTCTCGACC 40811 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 || | || || || || ||||| || |||||||| |||||||||||| Sbjct 40812 TCAAGGGTAATTGTCTTACCGGTTAGGGTTTTCACGAAGATCTGCATC 40859 Score = 89.7 bits (98), Expect = 3e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || || ||||||| || || || | |||| ||| || || || ||||| |||| Sbjct 40404 CCCCCACGGAGCCTCAAGACGAGATGAAGAGTAGATTCCTTTTGGATATTGTAATCGGCG 40463 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || | | |||| ||||||||||| || ||||| || |||| |||||| || || Sbjct 40464 AGAGTCCTGCCGTCCTCCAACTGCTTCCCGGCGAAGATAAGCCTCTGCTGATCCGGAGGA 40523 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | | |||||| || ||||| ||| | | | | || | ||||| || || Sbjct 40524 ATTCCCTCCTTATCCTGAATCTTGGCCTTGACGTTGTCAATTGTATCGGAACTCTCAACT 40583 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | || || || |||||||| |||||||| ||||| |||||||| Sbjct 40584 TCAAGAGTAATCGTCTTGCCGGTCAGAGTTTTAACAAATATCTGCAT 40630 Score = 82.4 bits (90), Expect = 5e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || || ||||||| || || |||| || || ||||| || ||||| || | Sbjct 40176 CCCCCTCGAAGCCTCAAGACAAGATGTAGGGTTGACTCCTTCTGAATATTGTAATCCGCA 40235 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || | |||| |||| |||||| || |||||||| || |||||||| || || Sbjct 40236 AGGGTTCTACCGTCTTCCAGCTGCTTCCCGGCGAAAATTAGGCGCTGCTGATCAGGAGGA 40295 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | | ||||| || |||||| ||| | | | | || | ||| | ||| || Sbjct 40296 ATTCCTTCCTTATCTTGAATCTTTGCCTTAACGTTGTCAATAGTATCAGAACTTTCCACC 40355 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 || | |||||||||||||| || |||||||| ||||| || |||||| Sbjct 40356 TCAAGAGTGATGGTTTTGCCTGTTAGAGTTTTGACAAAAATTTGCATC 40403 >seq71687 Length=64904 Score = 87.8 bits (96), Expect = 1e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || ||||||| | || |||||||| | || || ||||| |||||||| || | Sbjct 44686 CCACCGCGCAAGCGAAGGACCAGGTGCAGTGTCGACTCCTTCTGGATGTTGTAATCCGCT 44745 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 | | | | || || | ||||||||| || || ||||||| |||||| || || Sbjct 44746 AAGGTCCTGCCTTCCTCGAGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGATCCGGTGGG 44805 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | || ||||| || ||||| ||| | || | | || | ||||| ||||| || Sbjct 44806 ATGCCTTCCTTATCTTGGATCTTCGCCTTCACATTGTCAATGGTATCGGAGGATTCAACC 44865 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 || | || ||||| || || || || |||||||| |||||||||||| Sbjct 44866 TCGAGGGTAATGGTCTTACCCGTCAGGGTTTTCACGAAGATCTGCATC 44913 >seq42370 Length=41228 Score = 86.0 bits (94), Expect = 4e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 34198 TTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAA 34257 ||| ||||||||||| || |||| || ||| |||| ||||| || ||||| ||||| Sbjct 9941 TTCCTTCTGTATGTTATAATCGGCTAGGGTTCGGCCGTCCTCCAATTGTTTGCCGGCGAA 9882 Query 34258 AATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATC 34317 || || |||||||| || || | | |||||| || ||||| ||| | || Sbjct 9881 GATAAGGCGCTGCTGATCCGGAGGGATACCCTCCTTATCTTGGATCTTAGCCTTGACATT 9822 Query 34318 GGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCAC 34377 | || | ||||| || || || | || ||||| ||||| || || |||||||| Sbjct 9821 ATCAATAGTATCGGAACTCTCAACCTCGAGAGTTATGGTCTTGCCTGTTAGGGTTTTCAC 9762 Query 34378 AAAGATCTGCAT 34389 ||||||||||| Sbjct 9761 GAAGATCTGCAT 9750 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 322759753133120