Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Catharanthus_20roseus_20[genbank_20GCA_5F000949345.1_202015-03-06] 79,302 sequences; 522,653,749 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq65811 123 2e-23 seq73807 104 2e-17 seq42370 102 6e-17 seq72241 89.7 4e-13 seq53817 84.2 2e-11 >seq65811 Length=66007 Score = 123 bits (136), Expect = 2e-23 Identities = 155/210 (74%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||||||| || ||| |||||||||||||||||||| || ||| |||| || Sbjct 54799 ACCAAGTGAAGGGTGGATTCCTTCTGAATGTTGTAGTCCGCCAAGGTGCGGCCGTCTTCA 54858 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || |||||||| || ||||||| ||| ||||| || || | |||||||||||| | Sbjct 54859 AGCTGCTTTCCGGCAAAGATCAACCTCTGCTGGTCTGGTGGAATACCCTCCTTGTCTTGA 54918 Query 45248 ATTTTTTGCTTAACCGCCG-CCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTT 45306 | | || |||| || | | | | |||| | ||| ||||||| ||| || || || Sbjct 54919 A-TCTTGGCTTTCACGTTGTCAATGGTGTCGGAGCTCTCAACCTCCAGGGTGATGGTTTT 54977 Query 45307 GCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || || |||||||| |||||||||||||| Sbjct 54978 TCCGGTGAGAGTCTTGACAAAGATTTGCAT 55007 Score = 95.1 bits (104), Expect = 1e-14 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 45145 CTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAA 45204 ||||||||| || |||||||| || | | || ||||| || || || || || Sbjct 54389 CTCCTTCTGGATATTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTACCAGCAAA 54448 Query 45205 TATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGC 45264 ||||||| ||| ||||| || || | ||||||||||| |||||| ||| || Sbjct 54449 GATCAACCTCTGCTGGTCTGGTGGAATTCCCTCCTTGTCTTGGATTTTTGCCTTCACATT 54508 Query 45265 CGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCAC 45324 | | | |||| | ||||||||||| ||| || ||||| || |||| |||||||| Sbjct 54509 GTCAATGGTGTCAGAGCTCTCCACCTCCAGGGTGATAGTCTTACCGGTCAAGGTCTTCAC 54568 Query 45325 AAAGATTTGCAT 45336 |||||| ||||| Sbjct 54569 AAAGATCTGCAT 54580 Score = 93.3 bits (102), Expect = 3e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||||||| || ||| ||||| ||||| ||||||||| || ||| |||| || Sbjct 55027 ACCAAGTGAAGGGTGGATTCCTTTTGAATATTGTAGTCGGCCAAGGTGCGGCCGTCCTCG 55086 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || || |||||||| ||||| | || ||||| || || | || |||||||| | Sbjct 55087 AGCTGCTTACCGGCGAAGATCAATCTTTGCTGGTCTGGTGGAATGCCTTCCTTGTCTTGA 55146 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 ||||| ||| || | | | |||| | ||| || || | || || ||||| Sbjct 55147 ATTTTAGCCTTTACGTTGTCGATGGTGTCGGAGCTCTCAACTTCGAGCGTGATGGTCTTT 55206 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || |||| ||||| |||||||||||||| Sbjct 55207 CCGGTCAAGGTCTTGACAAAGATTTGCAT 55235 >seq73807 Length=69832 Score = 104 bits (114), Expect = 2e-17 Identities = 162/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 ||||| | | ||| || || | ||| || ||| |||||| || || |||||||| | Sbjct 39156 CCACCACGGAGTCTCAAGACAAGGTGAAGTGTGGACTCCTTTTGGATATTGTAGTCTGCC 39215 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 || || | || || |||||||| || || || ||||| || || ||||| || || Sbjct 39216 AGGGTACGGCCATCCTCAAGTTGTTTCCCTGCAAAAATCAAGCGTTGCTGGTCTGGGGGA 39275 Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCG-CCACGCTGTCCCCACCCTCCAC 45288 | |||||||||||| || |||| |||| | || | | | |||| | || || Sbjct 39276 ATTCCCTCCTTGTCCTGAA-TTTTGGCTTTAACGTTGTCAATTGTGTCTGAGCTTTCAAC 39334 Query 45289 CTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 || | |||||| ||||| || ||||||||||| |||||||| |||||| Sbjct 39335 TTCAAGGGTAATGGTCTTTCCTGTCAGAGTCTTGACAAAGATCTGCATG 39383 >seq42370 Length=41228 Score = 102 bits (112), Expect = 6e-17 Identities = 140/194 (72%), Gaps = 4/194 (2%) Strand=Plus/Minus Query 45145 CTCCTTCTGAATGTTGTAGTCGTTCA--GTTGGCGATCGTCGTCCAGTTGTTTTCCGGCG 45202 ||||||||| |||||||| || || ||| | | | || |||| || |||||||| Sbjct 10397 CTCCTTCTGGATGTTGTAATCAGCCAAGGTT--CTACCATCCTCCAACTGCTTTCCGGCA 10340 Query 45203 AATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACC 45262 || |||| ||||| || || ||||| | |||||||| || ||| || |||||| Sbjct 10339 AAGATCAGGCGCTGCTGATCCGGAGGAATCCCCTCCTTATCTTGAATCTTCGCCTTAACG 10280 Query 45263 GCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTC 45322 | | | || || ||| ||||||| |||||||||||| || |||||||| || Sbjct 10279 TTATCAATTGTATCAGAACTCTCGACCTCCAAGGTAATCGTCTTACCAGTCAGAGTTTTA 10220 Query 45323 ACAAAGATTTGCAT 45336 |||||||||||||| Sbjct 10219 ACAAAGATTTGCAT 10206 >seq72241 Length=55963 Score = 89.7 bits (98), Expect = 4e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 45133 GTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTG 45192 |||||| ||| ||||||||| || ||||| || ||| || | || || || || Sbjct 39743 GTGCAGGGTGGACTCCTTCTGGATATTGTAATCAGCCAGAGTACGCCCATCTTCAAGCTG 39802 Query 45193 TTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTT 45252 ||||| |||||||| | || ||| || || || || | ||||| |||||| ||| || Sbjct 39803 CTTTCCAGCGAATATAAGCCTCTGCTGATCCGGGGGAATTCCCTCTTTGTCCTGAATCTT 39862 Query 45253 TTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGT 45312 ||| || | | | | || || ||| ||||| | ||||||||||| || || Sbjct 39863 GGTCTTCACATTATCTATGGTATCTGAACTCTCAACCTCTAACGTAATCGTCTTCCCAGT 39922 Query 45313 CAGAGTCTTCACAAAGATTTGCAT 45336 || ||||||||||| || ||||| Sbjct 39923 CAATGTCTTCACAAATATCTGCAT 39946 >seq53817 Length=15024 Score = 84.2 bits (92), Expect = 2e-11 Identities = 145/209 (69%), Gaps = 4/209 (2%) Strand=Plus/Plus Query 45133 GTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCG--TTCAGTTGGCGATCGTCGTCCAGT 45190 ||| || ||| |||||||| ||||||||||| | |||| | |||| || || Sbjct 3653 GTGAAGGGTGGATTCCTTCTGGATGTTGTAGTCAGCTAGAGTT--CTGCCGTCTTCGAGC 3710 Query 45191 TGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATT 45250 || || |||||||| || | ||||| ||||| || || | |||||||||||| |||| Sbjct 3711 TGCTTACCGGCGAAGATGAGACGCTGCTGGTCCGGTGGGATGCCCTCCTTGTCCTGAATT 3770 Query 45251 TTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCC 45310 || ||| || | | | | ||| || ||||| | ||| || ||||| ||| Sbjct 3771 TTGGCCTTGACATTGTCAATGGTATCCGAGGATTCGACCTCAAGGGTGATGGTCTTCCCC 3830 Query 45311 GTCAGAGTCTTCACAAAGATTTGCATGTT 45339 || || || ||||| ||||| ||||| || Sbjct 3831 GTGAGGGTTTTCACGAAGATCTGCATTTT 3859 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 394693362535342