Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Catharanthus_20roseus_20[genbank_20GCA_5F000949345.1_202015-03-06]
79,302 sequences; 522,653,749 total letters
Query= NC_002816.1
Length=123500
Score E
Sequences producing significant alignments: (Bits) Value
seq65811 123 2e-23
seq73807 104 2e-17
seq42370 102 6e-17
seq72241 89.7 4e-13
seq53817 84.2 2e-11
>seq65811
Length=66007
Score = 123 bits (136), Expect = 2e-23
Identities = 155/210 (74%), Gaps = 2/210 (1%)
Strand=Plus/Plus
Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187
|||||||| || ||| |||||||||||||||||||| || ||| |||| ||
Sbjct 54799 ACCAAGTGAAGGGTGGATTCCTTCTGAATGTTGTAGTCCGCCAAGGTGCGGCCGTCTTCA 54858
Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247
|| || |||||||| || ||||||| ||| ||||| || || | |||||||||||| |
Sbjct 54859 AGCTGCTTTCCGGCAAAGATCAACCTCTGCTGGTCTGGTGGAATACCCTCCTTGTCTTGA 54918
Query 45248 ATTTTTTGCTTAACCGCCG-CCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTT 45306
| | || |||| || | | | | |||| | ||| ||||||| ||| || || ||
Sbjct 54919 A-TCTTGGCTTTCACGTTGTCAATGGTGTCGGAGCTCTCAACCTCCAGGGTGATGGTTTT 54977
Query 45307 GCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336
|| || |||||||| ||||||||||||||
Sbjct 54978 TCCGGTGAGAGTCTTGACAAAGATTTGCAT 55007
Score = 95.1 bits (104), Expect = 1e-14
Identities = 136/192 (71%), Gaps = 0/192 (0%)
Strand=Plus/Plus
Query 45145 CTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAA 45204
||||||||| || |||||||| || | | || ||||| || || || || ||
Sbjct 54389 CTCCTTCTGGATATTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTACCAGCAAA 54448
Query 45205 TATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGC 45264
||||||| ||| ||||| || || | ||||||||||| |||||| ||| ||
Sbjct 54449 GATCAACCTCTGCTGGTCTGGTGGAATTCCCTCCTTGTCTTGGATTTTTGCCTTCACATT 54508
Query 45265 CGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCAC 45324
| | | |||| | ||||||||||| ||| || ||||| || |||| ||||||||
Sbjct 54509 GTCAATGGTGTCAGAGCTCTCCACCTCCAGGGTGATAGTCTTACCGGTCAAGGTCTTCAC 54568
Query 45325 AAAGATTTGCAT 45336
|||||| |||||
Sbjct 54569 AAAGATCTGCAT 54580
Score = 93.3 bits (102), Expect = 3e-14
Identities = 146/209 (70%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187
|||||||| || ||| ||||| ||||| ||||||||| || ||| |||| ||
Sbjct 55027 ACCAAGTGAAGGGTGGATTCCTTTTGAATATTGTAGTCGGCCAAGGTGCGGCCGTCCTCG 55086
Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247
|| || || |||||||| ||||| | || ||||| || || | || |||||||| |
Sbjct 55087 AGCTGCTTACCGGCGAAGATCAATCTTTGCTGGTCTGGTGGAATGCCTTCCTTGTCTTGA 55146
Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307
||||| ||| || | | | |||| | ||| || || | || || |||||
Sbjct 55147 ATTTTAGCCTTTACGTTGTCGATGGTGTCGGAGCTCTCAACTTCGAGCGTGATGGTCTTT 55206
Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336
|| |||| ||||| ||||||||||||||
Sbjct 55207 CCGGTCAAGGTCTTGACAAAGATTTGCAT 55235
>seq73807
Length=69832
Score = 104 bits (114), Expect = 2e-17
Identities = 162/229 (71%), Gaps = 2/229 (1%)
Strand=Plus/Plus
Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169
||||| | | ||| || || | ||| || ||| |||||| || || |||||||| |
Sbjct 39156 CCACCACGGAGTCTCAAGACAAGGTGAAGTGTGGACTCCTTTTGGATATTGTAGTCTGCC 39215
Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229
|| || | || || |||||||| || || || ||||| || || ||||| || ||
Sbjct 39216 AGGGTACGGCCATCCTCAAGTTGTTTCCCTGCAAAAATCAAGCGTTGCTGGTCTGGGGGA 39275
Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCG-CCACGCTGTCCCCACCCTCCAC 45288
| |||||||||||| || |||| |||| | || | | | |||| | || ||
Sbjct 39276 ATTCCCTCCTTGTCCTGAA-TTTTGGCTTTAACGTTGTCAATTGTGTCTGAGCTTTCAAC 39334
Query 45289 CTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCATG 45337
|| | |||||| ||||| || ||||||||||| |||||||| ||||||
Sbjct 39335 TTCAAGGGTAATGGTCTTTCCTGTCAGAGTCTTGACAAAGATCTGCATG 39383
>seq42370
Length=41228
Score = 102 bits (112), Expect = 6e-17
Identities = 140/194 (72%), Gaps = 4/194 (2%)
Strand=Plus/Minus
Query 45145 CTCCTTCTGAATGTTGTAGTCGTTCA--GTTGGCGATCGTCGTCCAGTTGTTTTCCGGCG 45202
||||||||| |||||||| || || ||| | | | || |||| || ||||||||
Sbjct 10397 CTCCTTCTGGATGTTGTAATCAGCCAAGGTT--CTACCATCCTCCAACTGCTTTCCGGCA 10340
Query 45203 AATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACC 45262
|| |||| ||||| || || ||||| | |||||||| || ||| || ||||||
Sbjct 10339 AAGATCAGGCGCTGCTGATCCGGAGGAATCCCCTCCTTATCTTGAATCTTCGCCTTAACG 10280
Query 45263 GCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTC 45322
| | | || || ||| ||||||| |||||||||||| || |||||||| ||
Sbjct 10279 TTATCAATTGTATCAGAACTCTCGACCTCCAAGGTAATCGTCTTACCAGTCAGAGTTTTA 10220
Query 45323 ACAAAGATTTGCAT 45336
||||||||||||||
Sbjct 10219 ACAAAGATTTGCAT 10206
>seq72241
Length=55963
Score = 89.7 bits (98), Expect = 4e-13
Identities = 142/204 (70%), Gaps = 0/204 (0%)
Strand=Plus/Plus
Query 45133 GTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTG 45192
|||||| ||| ||||||||| || ||||| || ||| || | || || || ||
Sbjct 39743 GTGCAGGGTGGACTCCTTCTGGATATTGTAATCAGCCAGAGTACGCCCATCTTCAAGCTG 39802
Query 45193 TTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTT 45252
||||| |||||||| | || ||| || || || || | ||||| |||||| ||| ||
Sbjct 39803 CTTTCCAGCGAATATAAGCCTCTGCTGATCCGGGGGAATTCCCTCTTTGTCCTGAATCTT 39862
Query 45253 TTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGT 45312
||| || | | | | || || ||| ||||| | ||||||||||| || ||
Sbjct 39863 GGTCTTCACATTATCTATGGTATCTGAACTCTCAACCTCTAACGTAATCGTCTTCCCAGT 39922
Query 45313 CAGAGTCTTCACAAAGATTTGCAT 45336
|| ||||||||||| || |||||
Sbjct 39923 CAATGTCTTCACAAATATCTGCAT 39946
>seq53817
Length=15024
Score = 84.2 bits (92), Expect = 2e-11
Identities = 145/209 (69%), Gaps = 4/209 (2%)
Strand=Plus/Plus
Query 45133 GTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCG--TTCAGTTGGCGATCGTCGTCCAGT 45190
||| || ||| |||||||| ||||||||||| | |||| | |||| || ||
Sbjct 3653 GTGAAGGGTGGATTCCTTCTGGATGTTGTAGTCAGCTAGAGTT--CTGCCGTCTTCGAGC 3710
Query 45191 TGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATT 45250
|| || |||||||| || | ||||| ||||| || || | |||||||||||| ||||
Sbjct 3711 TGCTTACCGGCGAAGATGAGACGCTGCTGGTCCGGTGGGATGCCCTCCTTGTCCTGAATT 3770
Query 45251 TTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCC 45310
|| ||| || | | | | ||| || ||||| | ||| || ||||| |||
Sbjct 3771 TTGGCCTTGACATTGTCAATGGTATCCGAGGATTCGACCTCAAGGGTGATGGTCTTCCCC 3830
Query 45311 GTCAGAGTCTTCACAAAGATTTGCATGTT 45339
|| || || ||||| ||||| ||||| ||
Sbjct 3831 GTGAGGGTTTTCACGAAGATCTGCATTTT 3859
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 394693362535342
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |