Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Catharanthus_20roseus_20[genbank_20GCA_5F000949345.1_202015-03-06] 79,302 sequences; 522,653,749 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq39070 123 2e-23 >seq39070 Length=11651 Score = 123 bits (136), Expect = 2e-23 Identities = 370/566 (65%), Gaps = 19/566 (3%) Strand=Plus/Minus Query 14200 TAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGT 14259 ||| || ||||| |||||||| ||||| ||||||| | ||| | ||||| || || || Sbjct 7938 TAAGCAGGCAAAGTCACAATGGAGGCCTTCATCTCGAGAAATTAACTCGTTCGAGAAGGT 7879 Query 14260 TAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAA 14319 |||||| ||||| | || ||||| |||| ||||||||| ||| || || || || Sbjct 7878 TAATCCGGGCATAAGCCCCCGTTTCTTTAGCCAAAATATCGCACAAAAACTCCCCGAGAA 7819 Query 14320 GAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTT 14379 |||||||||||||| |||||| || | | || || |||| || || | Sbjct 7818 AAATATTCCCTCAACACAAGCAAAGGCGACGACACGCTCAGCAAAGGA-----TTCCGAG 7764 Query 14380 CGAT--ATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATA 14437 | || ||||| ||||| | | || |||| || | || || || ||||| Sbjct 7763 CCATCGATCCAACGAAGTGCCCAATTGGCCTTCTTTTCAACACAAGGAATGGTCTCAATC 7704 Query 14438 GCATTAAATAAATGTTCCTTCTC--TTTAGTACTTGAAATGTATGTATCAATAAGTAAGC 14495 ||| ||| | | |||||| | | | ||| ||||| | || | | || | Sbjct 7703 GCACGAAAGAGCCTATGCTTCTCGTCTGAATCCTT--TATGTAGGACTCGAGCAATAGAC 7646 Query 14496 TATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAACATCTAGCTT 14555 ||||||| || ||||| || || || ||||| || ||||| || ||||| | || | Sbjct 7645 TATACATCTCGGAGTGAATATTCTCGATAGCAATTTGAAAGCCGTAAAAGGCACGGGCCT 7586 Query 14556 CTGACCATTGTACCTCTGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCAC 14615 |||| ||| || ||| |||| |||| | ||| || ||| ||||||||| Sbjct 7585 CTGAAATTTGAACTTCTTTCATGAATCGGCCGGCAAGATTCTCCAAAACAATACCATCAG 7526 Query 14616 TAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGCTGAGTT--- 14672 ||| |||||||| || | | || | || |||| |||| || ||||| Sbjct 7525 AAGCGGCAAAAAAGGCGAGAACGTGAGTGATGAAGTGACGCTCGTC----GGGAGTTAGG 7470 Query 14673 TTTTCCAATCGGC-TAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCA 14731 |||| || ||| | |||| ||| ||||| ||||| || ||||||| ||| || Sbjct 7469 GCTTCCCATTGGCGGAGGTCCTGAGAGAGATCGACTTCCTCGGCTGTCCAGAAAGAGGCC 7410 Query 14732 ACAGCTTTTTTATACATTACCCATAT 14757 | || || || |||||| |||| || Sbjct 7409 TCGGCCTTCTTGTACATTTCCCAAAT 7384 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 481867462865360