Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Catharanthus_20roseus_20[genbank_20GCA_5F000949345.1_202015-03-06]
79,302 sequences; 522,653,749 total letters
Query= NC_003027.1
Length=150773
Score E
Sequences producing significant alignments: (Bits) Value
seq39070 123 2e-23
>seq39070
Length=11651
Score = 123 bits (136), Expect = 2e-23
Identities = 370/566 (65%), Gaps = 19/566 (3%)
Strand=Plus/Minus
Query 14200 TAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGT 14259
||| || ||||| |||||||| ||||| ||||||| | ||| | ||||| || || ||
Sbjct 7938 TAAGCAGGCAAAGTCACAATGGAGGCCTTCATCTCGAGAAATTAACTCGTTCGAGAAGGT 7879
Query 14260 TAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAA 14319
|||||| ||||| | || ||||| |||| ||||||||| ||| || || || ||
Sbjct 7878 TAATCCGGGCATAAGCCCCCGTTTCTTTAGCCAAAATATCGCACAAAAACTCCCCGAGAA 7819
Query 14320 GAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTT 14379
|||||||||||||| |||||| || | | || || |||| || || |
Sbjct 7818 AAATATTCCCTCAACACAAGCAAAGGCGACGACACGCTCAGCAAAGGA-----TTCCGAG 7764
Query 14380 CGAT--ATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATA 14437
| || ||||| ||||| | | || |||| || | || || || |||||
Sbjct 7763 CCATCGATCCAACGAAGTGCCCAATTGGCCTTCTTTTCAACACAAGGAATGGTCTCAATC 7704
Query 14438 GCATTAAATAAATGTTCCTTCTC--TTTAGTACTTGAAATGTATGTATCAATAAGTAAGC 14495
||| ||| | | |||||| | | | ||| ||||| | || | | || |
Sbjct 7703 GCACGAAAGAGCCTATGCTTCTCGTCTGAATCCTT--TATGTAGGACTCGAGCAATAGAC 7646
Query 14496 TATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAACATCTAGCTT 14555
||||||| || ||||| || || || ||||| || ||||| || ||||| | || |
Sbjct 7645 TATACATCTCGGAGTGAATATTCTCGATAGCAATTTGAAAGCCGTAAAAGGCACGGGCCT 7586
Query 14556 CTGACCATTGTACCTCTGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCAC 14615
|||| ||| || ||| |||| |||| | ||| || ||| |||||||||
Sbjct 7585 CTGAAATTTGAACTTCTTTCATGAATCGGCCGGCAAGATTCTCCAAAACAATACCATCAG 7526
Query 14616 TAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGCTGAGTT--- 14672
||| |||||||| || | | || | || |||| |||| || |||||
Sbjct 7525 AAGCGGCAAAAAAGGCGAGAACGTGAGTGATGAAGTGACGCTCGTC----GGGAGTTAGG 7470
Query 14673 TTTTCCAATCGGC-TAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCA 14731
|||| || ||| | |||| ||| ||||| ||||| || ||||||| ||| ||
Sbjct 7469 GCTTCCCATTGGCGGAGGTCCTGAGAGAGATCGACTTCCTCGGCTGTCCAGAAAGAGGCC 7410
Query 14732 ACAGCTTTTTTATACATTACCCATAT 14757
| || || || |||||| |||| ||
Sbjct 7409 TCGGCCTTCTTGTACATTTCCCAAAT 7384
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 481867462865360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |