Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Catharanthus_20roseus_20[genbank_20GCA_5F000949345.1_202015-03-06] 79,302 sequences; 522,653,749 total letters Query= NC_003094.2 Length=130759 Score E Sequences producing significant alignments: (Bits) Value seq42370 91.5 1e-13 >seq42370 Length=41228 Score = 91.5 bits (100), Expect = 1e-13 Identities = 150/215 (70%), Gaps = 6/215 (3%) Strand=Plus/Plus Query 24832 ATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAATCGAG- 24890 ||||||||||||||||||||| ||||||| || ||||| || |||| || || ||| Sbjct 9978 ATGCAGATATTTGTTAAAACCCTAACCGGAAAGACGATTACTCTCGAGGTTGA---GAGT 10034 Query 24891 --CGACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTACCGGTTGAC 24948 ||||| | | || | || |||| |||||| | || ||||| | || ||| Sbjct 10035 TCCGACACTATTGACAACGTCAAGGCTAAAATTCAGGATAAGGAAGGGATCCCTCCGGAC 10094 Query 24949 CAGCAACGTTTAATATATGCGGGCAAACAACTGGAAGATTCCATGACTATGAACGATTAC 25008 |||||| | | || | ||| || || ||| |||| ||| | |||| | ||||||| Sbjct 10095 CAGCAAAGGCTCATCTTTGCTGGGAAGCAATTGGAGGATGGCCGGACTCTTGCCGATTAC 10154 Query 25009 AGCATACAGAAAGAGGCCACGCTTCATTTAGTGTT 25043 | || || |||||| | || |||||| | || || Sbjct 10155 AATATTCAAAAAGAGTCGACCCTTCATCTCGTCTT 10189 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 417899712059840