Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Catharanthus_20roseus_20[genbank_20GCA_5F000949345.1_202015-03-06]
79,302 sequences; 522,653,749 total letters
Query= NC_003310.1
Length=196858
Score E
Sequences producing significant alignments: (Bits) Value
seq35021 205 1e-47
seq39070 176 6e-39
>seq35021
Length=73443
Score = 205 bits (226), Expect = 1e-47
Identities = 591/903 (65%), Gaps = 20/903 (2%)
Strand=Plus/Plus
Query 33291 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTT 33350
||||| ||||| ||||| | || ||||| ||||| || || || | ||| || |
Sbjct 65760 TTTTGATATTCTCCCACTCTCTTCTCGAAGAAATTCGTCTTCCCCTGCAAACTAATCAAT 65819
Query 33351 TCCATGAAATCAAACGGATTGGTAACATTGTAAAtttttttAAATCCCAATTCAGAAATC 33410
||||| |||| || ||||| |||||| || || ||| | ||||||| | || |
Sbjct 65820 TCCATCCAATCGAATGGATTCAGAACATTATACATCTTTCGATATCCCAAAGCTTCAAGC 65879
Query 33411 AATCTATCTGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATGAGT 33470
||||| ||||| |||||||| || || |||| | || | ||||| || | ||
Sbjct 65880 AATCTGTCTGCAACGAATTCAATGTACTGGCTCATTAGATCTCCGTTCATACCAACTAGG 65939
Query 33471 TTAACTGGAAGAGC--CACAGTAAGAAATTCTTGTTCAATGGATACCGCATTTGTTATAA 33528
| || ||||| | ||| | |||||| || || || |||| | || |
Sbjct 65940 GCACAAGGCAGAGCATCGCAG--ACGAATTCTCTCTCGATATCAACTGCATCCGCTACGA 65997
Query 33529 TAAATCTAACGGTTTCTTCACTCGGTGGATGTAAT----AAATGTTTAAACATCAAACAT 33584
| || | ||||| ||||| | | || | | | | | | || ||
Sbjct 65998 TTCCCCTGA----TTCTTTCCTCGGAAAGTTTCATCCGCAGAAGACTGTAGAGTAAGCAA 66053
Query 33585 GCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCG 33644
|||||||||||||| ||||| ||||||| ||||| ||||| || || || ||||||
Sbjct 66054 GCGAAATCGCAGTGGAGACCTTCGTCTCGGGAGATTAACTCGTTCGAGAAGGTTAGTCCG 66113
Query 33645 GGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCG-GAAAAGAAGAT 33703
||||| |||||||| || || | ||||||||| | || || ||| || || || ||
Sbjct 66114 GGCATAAGGCCACGTTTCTTTAACCAAAATATCGC-GCAAAAACTCCCCGAGAAAAATAT 66172
Query 33704 TCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAAC---CGGCGCTGTCATGTAT 33760
|||||| || ||| ||||| | | | || || | | | || ||| ||
Sbjct 66173 TCCTTCGACACAAGCGAAGGCGACTATACGTTCGGCAAAGGATTCCGAGCCGTCG---AT 66229
Query 33761 CCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAA 33820
||| | ||||| | ||||||||||| || ||||| || ||||| || || |||
Sbjct 66230 CCAACGAAGTGCCCATTTGGCCTTCTTTTCAACGCAAGGAATTGTTTCGATTGCGCGAAA 66289
Query 33821 GAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTC 33880
||| ||| || ||||| || || | |||| |||| ||| ||||||||||| ||
Sbjct 66290 GAGTCTGTTCTTCTCATTGGAGTCCTTTATGTAAGACTCGAGCAAGAGACTATACATCTC 66349
Query 33881 CGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTG 33940
|| ||||| || || ||||| || || || ||||| || | || |||| ||||||
Sbjct 66350 GGAGTGAATATTCTCGATGGCGATTTGGAAACCGTAAAAGGCACGGGCTTCGGAAATCTG 66409
Query 33941 CACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGGCTGCAAA 34000
|||||| | ||||| | || | ||| || || || |||||| || || ||
Sbjct 66410 AACTTCTTTCATGAATCGACCGGCGAGATTCTCCAAAACAATGCCATCAGAAGCGGCGAA 66469
Query 34001 AAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATT 34060
|| || | || || | || || | ||||| || || || | ||| | |
Sbjct 66470 GAAGGCGAGAACGTGAGTGATGAAGTGACGCTCGTCGGGAGTGAGGGCTTCCCATTGACG 66529
Query 34061 GATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATA 34120
|| || | ||||| ||| || || || | ||||| || || ||||||||||| || ||
Sbjct 66530 GAGGTCCTGAGATAGATCGACCTCCTCGGCGGTCCAGAAGGAAGCCTCTGCCTTCTTGTA 66589
Query 34121 CATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAATCTATTTGGATTTGGTGC 34180
||| | ||| || | | | ||||| |||||||| || || | | |||||| |||||
Sbjct 66590 CATCTCCCAAATCTGAGGGTATTGAATTGGGAACATGCAGAAACGGTCTGGATTGGGTGC 66649
Query 34181 AAG 34183
|||
Sbjct 66650 AAG 66652
>seq39070
Length=11651
Score = 176 bits (194), Expect = 6e-39
Identities = 402/605 (66%), Gaps = 0/605 (0%)
Strand=Plus/Minus
Query 33579 AAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTG 33638
|| || || || || || || || || || |||| | |||||| ||||| || || ||
Sbjct 7937 AAGCAGGCAAAGTCACAATGGAGGCCTTCATCTCGAGAAATTAACTCGTTCGAGAAGGTT 7878
Query 33639 AGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAG 33698
| ||||||||| || || || || || ||||||||||| | | || || || ||
Sbjct 7877 AATCCGGGCATAAGCCCCCGTTTCTTTAGCCAAAATATCGCACAAAAACTCCCCGAGAAA 7818
Query 33699 AAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTCATGT 33758
|| ||||| || || ||||||||| | | | ||| || | | | |||
Sbjct 7817 AATATTCCCTCAACACAAGCAAAGGCGACGACACGCTCAGCAAAGGATTCCGAGCCATCG 7758
Query 33759 ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTA 33818
||||| | ||||||| ||||||||||| |||||||| || || || || ||| |
Sbjct 7757 ATCCAACGAAGTGCCCAATTGGCCTTCTTTTCAACACAAGGAATGGTCTCAATCGCACGA 7698
Query 33819 AAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATT 33878
||||| | || || | ||| || | || | |||| ||| |||||||||||
Sbjct 7697 AAGAGCCTATGCTTCTCGTCTGAATCCTTTATGTAGGACTCGAGCAATAGACTATACATC 7638
Query 33879 TCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATC 33938
|| || ||||| || || || || || ||||| ||||| || | ||||| | |||
Sbjct 7637 TCGGAGTGAATATTCTCGATAGCAATTTGAAAGCCGTAAAAGGCACGGGCCTCTGAAATT 7578
Query 33939 TGCACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGGCTGCA 33998
|| |||||| | ||||| | || | ||| || || || |||||| || |||
Sbjct 7577 TGAACTTCTTTCATGAATCGGCCGGCAAGATTCTCCAAAACAATACCATCAGAAGCGGCA 7518
Query 33999 AAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCA 34058
||||| || | || || | || || | ||||| || ||||| | ||| |
Sbjct 7517 AAAAAGGCGAGAACGTGAGTGATGAAGTGACGCTCGTCGGGAGTTAGGGCTTCCCATTGG 7458
Query 34059 TTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTA 34118
|| || | ||| | ||| ||||| || ||||||| || || ||||| ||||| ||
Sbjct 7457 CGGAGGTCCTGAGAGAGATCGACTTCCTCGGCTGTCCAGAAAGAGGCCTCGGCCTTCTTG 7398
Query 34119 TACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAATCTATTTGGATTTGGT 34178
||||| | ||| || | | | ||||| |||||||| ||| |||| | |||||| ||
Sbjct 7397 TACATTTCCCAAATCTGAGGGTATTGAATTGGGAACATACAGAATCGGTCTGGATTGGGG 7338
Query 34179 GCAAG 34183
|| ||
Sbjct 7337 GCGAG 7333
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 629193277558560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |