Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Catharanthus_20roseus_20[genbank_20GCA_5F000949345.1_202015-03-06] 79,302 sequences; 522,653,749 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq35021 205 1e-47 seq39070 176 6e-39 >seq35021 Length=73443 Score = 205 bits (226), Expect = 1e-47 Identities = 591/903 (65%), Gaps = 20/903 (2%) Strand=Plus/Plus Query 33291 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTT 33350 ||||| ||||| ||||| | || ||||| ||||| || || || | ||| || | Sbjct 65760 TTTTGATATTCTCCCACTCTCTTCTCGAAGAAATTCGTCTTCCCCTGCAAACTAATCAAT 65819 Query 33351 TCCATGAAATCAAACGGATTGGTAACATTGTAAAtttttttAAATCCCAATTCAGAAATC 33410 ||||| |||| || ||||| |||||| || || ||| | ||||||| | || | Sbjct 65820 TCCATCCAATCGAATGGATTCAGAACATTATACATCTTTCGATATCCCAAAGCTTCAAGC 65879 Query 33411 AATCTATCTGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATGAGT 33470 ||||| ||||| |||||||| || || |||| | || | ||||| || | || Sbjct 65880 AATCTGTCTGCAACGAATTCAATGTACTGGCTCATTAGATCTCCGTTCATACCAACTAGG 65939 Query 33471 TTAACTGGAAGAGC--CACAGTAAGAAATTCTTGTTCAATGGATACCGCATTTGTTATAA 33528 | || ||||| | ||| | |||||| || || || |||| | || | Sbjct 65940 GCACAAGGCAGAGCATCGCAG--ACGAATTCTCTCTCGATATCAACTGCATCCGCTACGA 65997 Query 33529 TAAATCTAACGGTTTCTTCACTCGGTGGATGTAAT----AAATGTTTAAACATCAAACAT 33584 | || | ||||| ||||| | | || | | | | | | || || Sbjct 65998 TTCCCCTGA----TTCTTTCCTCGGAAAGTTTCATCCGCAGAAGACTGTAGAGTAAGCAA 66053 Query 33585 GCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCG 33644 |||||||||||||| ||||| ||||||| ||||| ||||| || || || |||||| Sbjct 66054 GCGAAATCGCAGTGGAGACCTTCGTCTCGGGAGATTAACTCGTTCGAGAAGGTTAGTCCG 66113 Query 33645 GGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCG-GAAAAGAAGAT 33703 ||||| |||||||| || || | ||||||||| | || || ||| || || || || Sbjct 66114 GGCATAAGGCCACGTTTCTTTAACCAAAATATCGC-GCAAAAACTCCCCGAGAAAAATAT 66172 Query 33704 TCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAAC---CGGCGCTGTCATGTAT 33760 |||||| || ||| ||||| | | | || || | | | || ||| || Sbjct 66173 TCCTTCGACACAAGCGAAGGCGACTATACGTTCGGCAAAGGATTCCGAGCCGTCG---AT 66229 Query 33761 CCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAA 33820 ||| | ||||| | ||||||||||| || ||||| || ||||| || || ||| Sbjct 66230 CCAACGAAGTGCCCATTTGGCCTTCTTTTCAACGCAAGGAATTGTTTCGATTGCGCGAAA 66289 Query 33821 GAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTC 33880 ||| ||| || ||||| || || | |||| |||| ||| ||||||||||| || Sbjct 66290 GAGTCTGTTCTTCTCATTGGAGTCCTTTATGTAAGACTCGAGCAAGAGACTATACATCTC 66349 Query 33881 CGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTG 33940 || ||||| || || ||||| || || || ||||| || | || |||| |||||| Sbjct 66350 GGAGTGAATATTCTCGATGGCGATTTGGAAACCGTAAAAGGCACGGGCTTCGGAAATCTG 66409 Query 33941 CACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGGCTGCAAA 34000 |||||| | ||||| | || | ||| || || || |||||| || || || Sbjct 66410 AACTTCTTTCATGAATCGACCGGCGAGATTCTCCAAAACAATGCCATCAGAAGCGGCGAA 66469 Query 34001 AAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATT 34060 || || | || || | || || | ||||| || || || | ||| | | Sbjct 66470 GAAGGCGAGAACGTGAGTGATGAAGTGACGCTCGTCGGGAGTGAGGGCTTCCCATTGACG 66529 Query 34061 GATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATA 34120 || || | ||||| ||| || || || | ||||| || || ||||||||||| || || Sbjct 66530 GAGGTCCTGAGATAGATCGACCTCCTCGGCGGTCCAGAAGGAAGCCTCTGCCTTCTTGTA 66589 Query 34121 CATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAATCTATTTGGATTTGGTGC 34180 ||| | ||| || | | | ||||| |||||||| || || | | |||||| ||||| Sbjct 66590 CATCTCCCAAATCTGAGGGTATTGAATTGGGAACATGCAGAAACGGTCTGGATTGGGTGC 66649 Query 34181 AAG 34183 ||| Sbjct 66650 AAG 66652 >seq39070 Length=11651 Score = 176 bits (194), Expect = 6e-39 Identities = 402/605 (66%), Gaps = 0/605 (0%) Strand=Plus/Minus Query 33579 AAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTG 33638 || || || || || || || || || || |||| | |||||| ||||| || || || Sbjct 7937 AAGCAGGCAAAGTCACAATGGAGGCCTTCATCTCGAGAAATTAACTCGTTCGAGAAGGTT 7878 Query 33639 AGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAG 33698 | ||||||||| || || || || || ||||||||||| | | || || || || Sbjct 7877 AATCCGGGCATAAGCCCCCGTTTCTTTAGCCAAAATATCGCACAAAAACTCCCCGAGAAA 7818 Query 33699 AAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTCATGT 33758 || ||||| || || ||||||||| | | | ||| || | | | ||| Sbjct 7817 AATATTCCCTCAACACAAGCAAAGGCGACGACACGCTCAGCAAAGGATTCCGAGCCATCG 7758 Query 33759 ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTA 33818 ||||| | ||||||| ||||||||||| |||||||| || || || || ||| | Sbjct 7757 ATCCAACGAAGTGCCCAATTGGCCTTCTTTTCAACACAAGGAATGGTCTCAATCGCACGA 7698 Query 33819 AAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATT 33878 ||||| | || || | ||| || | || | |||| ||| ||||||||||| Sbjct 7697 AAGAGCCTATGCTTCTCGTCTGAATCCTTTATGTAGGACTCGAGCAATAGACTATACATC 7638 Query 33879 TCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATC 33938 || || ||||| || || || || || ||||| ||||| || | ||||| | ||| Sbjct 7637 TCGGAGTGAATATTCTCGATAGCAATTTGAAAGCCGTAAAAGGCACGGGCCTCTGAAATT 7578 Query 33939 TGCACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGGCTGCA 33998 || |||||| | ||||| | || | ||| || || || |||||| || ||| Sbjct 7577 TGAACTTCTTTCATGAATCGGCCGGCAAGATTCTCCAAAACAATACCATCAGAAGCGGCA 7518 Query 33999 AAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCA 34058 ||||| || | || || | || || | ||||| || ||||| | ||| | Sbjct 7517 AAAAAGGCGAGAACGTGAGTGATGAAGTGACGCTCGTCGGGAGTTAGGGCTTCCCATTGG 7458 Query 34059 TTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTA 34118 || || | ||| | ||| ||||| || ||||||| || || ||||| ||||| || Sbjct 7457 CGGAGGTCCTGAGAGAGATCGACTTCCTCGGCTGTCCAGAAAGAGGCCTCGGCCTTCTTG 7398 Query 34119 TACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAATCTATTTGGATTTGGT 34178 ||||| | ||| || | | | ||||| |||||||| ||| |||| | |||||| || Sbjct 7397 TACATTTCCCAAATCTGAGGGTATTGAATTGGGAACATACAGAATCGGTCTGGATTGGGG 7338 Query 34179 GCAAG 34183 || || Sbjct 7337 GCGAG 7333 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629193277558560