Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Catharanthus_20roseus_20[genbank_20GCA_5F000949345.1_202015-03-06]
79,302 sequences; 522,653,749 total letters
Query= NC_003389.1
Length=146454
Score E
Sequences producing significant alignments: (Bits) Value
seq39070 114 1e-20
>seq39070
Length=11651
Score = 114 bits (126), Expect = 1e-20
Identities = 378/584 (65%), Gaps = 8/584 (1%)
Strand=Plus/Minus
Query 11626 TAAACACGCAAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGT 11685
||| || ||||| |||||||| | ||||| |||| | |||| || || || || ||
Sbjct 7938 TAAGCAGGCAAAGTCACAATGGAGGCCTTCATCTCGAGAAATTAACTCGTTCGAGAAGGT 7879
Query 11686 TAATCCGGGCATCAATCCTCGtttttttATCCAAAATATAGCAGCAAATGAACCAGAAAA 11745
|||||||||||| | || ||||| |||| ||||||||| ||| ||| || || ||
Sbjct 7878 TAATCCGGGCATAAGCCCCCGTTTCTTTAGCCAAAATATCGCACAAAAACTCCCCGAGAA 7819
Query 11746 GAATATTCCCTCCACAGCTGCAAATGCTACTACTCTTTCTCCATATACCTTGTTGCTAGA 11805
||||||||||| ||| ||||| || || || | || || | | || |
Sbjct 7818 AAATATTCCCTCAACACAAGCAAAGGCGACGACACGCTCAGCAAAGGATTCCGAGCCATC 7759
Query 11806 TATCCATTTTCTGGCCCAATCAGCTTTCTTTTTTACGCATTCCATTGTTTCTATAGCGTT 11865
||||| ||||||| || ||||||| || || || || || || ||
Sbjct 7758 GATCCAACGAAGTGCCCAATTGGCCTTCTTTTCAACACAAGGAATGGTCTCAATCGCACG 7699
Query 11866 AAATA---AATGCATTTTTTCTATATTATCTCTTACATATGTATCTATTAATAAACTATA 11922
||| | |||| | | ||| ||| ||| || | || | |||| ||||||
Sbjct 7698 AAAGAGCCTATGCTTCTCGTCT---GAATCCTTTATGTAGGACTCGAGCAATAGACTATA 7642
Query 11923 CATTTCTGAATGAATATTTTCCATAGCTATTTGAAATCCATAGAAACATCGTGCCTCTGA 11982
||| || || |||||||| || ||||| |||||||| || || || || ||||||||
Sbjct 7641 CATCTCGGAGTGAATATTCTCGATAGCAATTTGAAAGCCGTAAAAGGCACGGGCCTCTGA 7582
Query 11983 ACACTGTACATC-CACATAAAATCTTTCCGCTAAATTCTCATTTACAATACCATCACTAG 12041
| || || || ||| |||| | || | |||||| |||||||||||| ||
Sbjct 7581 AATTTGAACTTCTTTCAT-GAATCGGCCGGCAAGATTCTCCAAAACAATACCATCAGAAG 7523
Query 12042 ATGCAAAAAATGCTAGTATATGTTTTATAAAGTATTTTTCGTCTTTAGTTAATTTATCCC 12101
|||||||| || || | || | || |||| ||||| ||||| ||||
Sbjct 7522 CGGCAAAAAAGGCGAGAACGTGAGTGATGAAGTGACGCTCGTCGGGAGTTAGGGCTTCCC 7463
Query 12102 AATCATCTAAATCTTTTGATAAATCTACTTCTTCAACGGTCCAAAAACTTGCCACTGATT 12161
| | | || | || | ||| ||||| || | ||||| ||| ||| | | |
Sbjct 7462 ATTGGCGGAGGTCCTGAGAGAGATCGACTTCCTCGGCTGTCCAGAAAGAGGCCTCGGCCT 7403
Query 12162 GTTTATACATTTTCCAGATATCATGATACTTAATAGGGAAAATA 12205
|| ||||||| ||| || | | | || | ||| ||||| |||
Sbjct 7402 TCTTGTACATTTCCCAAATCTGAGGGTATTGAATTGGGAACATA 7359
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 468060363078880
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |