Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Catharanthus_20roseus_20[genbank_20GCA_5F000949345.1_202015-03-06] 79,302 sequences; 522,653,749 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq39070 114 1e-20 >seq39070 Length=11651 Score = 114 bits (126), Expect = 1e-20 Identities = 378/584 (65%), Gaps = 8/584 (1%) Strand=Plus/Minus Query 11626 TAAACACGCAAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGT 11685 ||| || ||||| |||||||| | ||||| |||| | |||| || || || || || Sbjct 7938 TAAGCAGGCAAAGTCACAATGGAGGCCTTCATCTCGAGAAATTAACTCGTTCGAGAAGGT 7879 Query 11686 TAATCCGGGCATCAATCCTCGtttttttATCCAAAATATAGCAGCAAATGAACCAGAAAA 11745 |||||||||||| | || ||||| |||| ||||||||| ||| ||| || || || Sbjct 7878 TAATCCGGGCATAAGCCCCCGTTTCTTTAGCCAAAATATCGCACAAAAACTCCCCGAGAA 7819 Query 11746 GAATATTCCCTCCACAGCTGCAAATGCTACTACTCTTTCTCCATATACCTTGTTGCTAGA 11805 ||||||||||| ||| ||||| || || || | || || | | || | Sbjct 7818 AAATATTCCCTCAACACAAGCAAAGGCGACGACACGCTCAGCAAAGGATTCCGAGCCATC 7759 Query 11806 TATCCATTTTCTGGCCCAATCAGCTTTCTTTTTTACGCATTCCATTGTTTCTATAGCGTT 11865 ||||| ||||||| || ||||||| || || || || || || || Sbjct 7758 GATCCAACGAAGTGCCCAATTGGCCTTCTTTTCAACACAAGGAATGGTCTCAATCGCACG 7699 Query 11866 AAATA---AATGCATTTTTTCTATATTATCTCTTACATATGTATCTATTAATAAACTATA 11922 ||| | |||| | | ||| ||| ||| || | || | |||| |||||| Sbjct 7698 AAAGAGCCTATGCTTCTCGTCT---GAATCCTTTATGTAGGACTCGAGCAATAGACTATA 7642 Query 11923 CATTTCTGAATGAATATTTTCCATAGCTATTTGAAATCCATAGAAACATCGTGCCTCTGA 11982 ||| || || |||||||| || ||||| |||||||| || || || || |||||||| Sbjct 7641 CATCTCGGAGTGAATATTCTCGATAGCAATTTGAAAGCCGTAAAAGGCACGGGCCTCTGA 7582 Query 11983 ACACTGTACATC-CACATAAAATCTTTCCGCTAAATTCTCATTTACAATACCATCACTAG 12041 | || || || ||| |||| | || | |||||| |||||||||||| || Sbjct 7581 AATTTGAACTTCTTTCAT-GAATCGGCCGGCAAGATTCTCCAAAACAATACCATCAGAAG 7523 Query 12042 ATGCAAAAAATGCTAGTATATGTTTTATAAAGTATTTTTCGTCTTTAGTTAATTTATCCC 12101 |||||||| || || | || | || |||| ||||| ||||| |||| Sbjct 7522 CGGCAAAAAAGGCGAGAACGTGAGTGATGAAGTGACGCTCGTCGGGAGTTAGGGCTTCCC 7463 Query 12102 AATCATCTAAATCTTTTGATAAATCTACTTCTTCAACGGTCCAAAAACTTGCCACTGATT 12161 | | | || | || | ||| ||||| || | ||||| ||| ||| | | | Sbjct 7462 ATTGGCGGAGGTCCTGAGAGAGATCGACTTCCTCGGCTGTCCAGAAAGAGGCCTCGGCCT 7403 Query 12162 GTTTATACATTTTCCAGATATCATGATACTTAATAGGGAAAATA 12205 || ||||||| ||| || | | | || | ||| ||||| ||| Sbjct 7402 TCTTGTACATTTCCCAAATCTGAGGGTATTGAATTGGGAACATA 7359 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468060363078880