Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Catharanthus_20roseus_20[genbank_20GCA_5F000949345.1_202015-03-06] 79,302 sequences; 522,653,749 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq73807 95.1 1e-14 seq72241 93.3 4e-14 seq65811 91.5 1e-13 seq53817 86.0 6e-12 >seq73807 Length=69832 Score = 95.1 bits (104), Expect = 1e-14 Identities = 96/125 (77%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 139547 AAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTC 139606 |||||||| || || || | || ||||| ||||| ||||||||||| | ||| || Sbjct 38937 AAACGCAACACCAAATGCAGAGTTGACTCCTTTTGGATGTTATAATCAGCAAGTGTCCTA 38996 Query 139607 GAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCT 139666 || || ||||||||||| ||| | |||||||| ||||| || || || ||||||||| Sbjct 38997 CCATCCTCAAGCTGTTTACCGGCAAATATCAGACGCTGCTGGTCAGGGGGAATGCCTTCT 39056 Query 139667 TTGTC 139671 ||||| Sbjct 39057 TTGTC 39061 Score = 95.1 bits (104), Expect = 1e-14 Identities = 160/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 ||| || || | |||||||| | ||||| || ||||| |||||||| || || || Sbjct 39383 GCCACCACGGAGTCGCAAAACAAGGTGAAGGGTGGACTCCTTTTGAATATTGTAGTCTGC 39442 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 | || | || || |||||||| |||||| | |||| |||||||||||| || || Sbjct 39443 AAGGGTACGGCCATCCTCAAGCTGTTTCCCAGCAAAAATCAAACGTTGCTGATCAGGGGG 39502 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCA 139715 || || || ||||| ||| |||| | ||| | | || | |||||| | | || | Sbjct 39503 AATTCCCTCCTTGTC-CTGAATTTTGGCTTTGACATTGTCAATTGTGTCTGAGCTTTCGA 39561 Query 139716 CCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 | || | ||| | ||||| || |||| || || ||||| |||||||| Sbjct 39562 CTTCCAGGGTGATGGTCTTTCCTGTCAGGGTCTTAACGAAGATTTGCAT 39610 >seq72241 Length=55963 Score = 93.3 bits (102), Expect = 4e-14 Identities = 141/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 |||||||| || || || ||||||||| | || | ||| ||||| ||||| || Sbjct 40662 GTAGACTCCTTCTGGATATTATAATCGGCGAGGGTTCGGCCGTCCTCGAGTTGTTTGCCG 40721 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTG-TTT 139686 || |||| || || |||||||||||||| || || || ||||| ||| | || | || Sbjct 40722 GCGAAGATTAGGCGCTGCTGATCGGGAGGGATTCCCTCCTTGTC-TTGAATCTTAGCCTT 40780 Query 139687 TAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGT 139746 | | || | ||| |||| | ||| ||||||| ||| | ||||| ||||| | || Sbjct 40781 GACATTGTCGATTGTATCGGAGCTCTCGACCTCAAGGGTAATTGTCTTACCGGTTAGGGT 40840 Query 139747 TTTTACGAATATTTGCAT 139764 ||| ||||| || ||||| Sbjct 40841 TTTCACGAAGATCTGCAT 40858 Score = 82.4 bits (90), Expect = 8e-11 Identities = 94/124 (76%), Gaps = 2/124 (2%) Strand=Plus/Plus Query 139549 ACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATC-GCTCATTGTGCTCG 139607 |||||| || | |||| || ||||| ||||||||||||||||| ||| | || | Sbjct 39959 ACGCAACACCAGATGAAGAGTGGACTCCTTTTGAATGTTATAATCAGCT-AGAGTACGAC 40017 Query 139608 AGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTT 139667 |||||| | ||| || || ||| ||||||| | ||| ||||| ||||| || ||||||| Sbjct 40018 CGTCTTCCAACTGCTTCCCGGCAAAGATCAGTCTTTGTTGATCCGGAGGAATCCCTTCTT 40077 Query 139668 TGTC 139671 | || Sbjct 40078 TATC 40081 >seq65811 Length=66007 Score = 91.5 bits (100), Expect = 1e-13 Identities = 151/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 139547 AAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTC 139606 ||||| | || ||||| | |||||||| ||||||||||| ||||| | || || Sbjct 55246 AAACGGAGGACCAAGTGGAGGGTAGACTCCTTTTGAATGTTGTAATCCGCAAGGGTTCTG 55305 Query 139607 GAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCT 139666 ||| |||||||| || || ||| ||||||| | |||||| || ||||| || || || Sbjct 55306 CCGTCCTCGAGCTGCTTTCCGGCAAAGATCAGCCTTTGCTGGTCTGGAGGAATTCCCTCC 55365 Query 139667 TTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTC 139726 || || ||| ||| || | | || | ||||||| | ||| || || | || Sbjct 55366 TTATCCTGGATCTTTGCCTTGACGTTATCGATGGTGTCGGAGCTCTCGACTTCGAGAGTG 55425 Query 139727 ACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 | ||||| ||||| | || || ||||| || ||||| Sbjct 55426 ATGGTCTTTCCGGTAAGAGTCTTAACGAAGATCTGCAT 55463 >seq53817 Length=15024 Score = 86.0 bits (94), Expect = 6e-12 Identities = 160/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATC-GC 139595 ||| || || | || | ||| | ||||| || || || || || ||||| || || || Sbjct 3629 GCCACCACGGAGGCGAAGAACAAGGTGAAGGGTGGATTCCTTCTGGATGTTGTAGTCAGC 3688 Query 139596 TCATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAG 139655 | | || || |||||||||||| ||||| || |||| ||||| ||||| || || | Sbjct 3689 T-AGAGTTCTGCCGTCTTCGAGCTGCTTACCGGCGAAGATGAGACGCTGCTGGTCCGGTG 3747 Query 139656 GTATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCC 139714 | ||||| || ||||| ||| |||| | || | | || | || || | || || Sbjct 3748 GGATGCCCTCCTTGTC-CTGAATTTTGGCCTTGACATTGTCAATGGTATCCGAGGATTCG 3806 Query 139715 ACCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||||||| ||| | ||||| || || | ||||| ||||| || ||||| Sbjct 3807 ACCTCAAGGGTGATGGTCTTCCCCGTGAGGGTTTTCACGAAGATCTGCAT 3856 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 495572264158400