Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Catharanthus_20roseus_20[genbank_20GCA_5F000949345.1_202015-03-06] 79,302 sequences; 522,653,749 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq35021 210 3e-49 seq39070 176 6e-39 seq67281 89.7 7e-13 seq50219 89.7 7e-13 seq42762 89.7 7e-13 seq40763 89.7 7e-13 >seq35021 Length=73443 Score = 210 bits (232), Expect = 3e-49 Identities = 597/907 (66%), Gaps = 28/907 (3%) Strand=Plus/Plus Query 49669 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTT 49728 ||||| ||||| ||||| | || ||||| ||||| || || || | ||| || | Sbjct 65760 TTTTGATATTCTCCCACTCTCTTCTCGAAGAAATTCGTCTTCCCCTGCAAACTAATCAAT 65819 Query 49729 TCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATC 49788 ||||| |||| || ||||| ||||||||| || ||| | ||||||| | || | Sbjct 65820 TCCATCCAATCGAATGGATTCAGAACATTATACATCTTTCGATATCCCAAAGCTTCAAGC 65879 Query 49789 AATCTATCCGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGT 49848 ||||| || || || ||||| || || |||| | || | ||||| || | || Sbjct 65880 AATCTGTCTGCAACGAATTCAATGTACTGGCTCATTAGATCTCCGTTCATACCAACTAGG 65939 Query 49849 TTAACTGGAAGAGC--CGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCTGTTATAA 49906 | || ||||| ||||| | |||||| || || || ||||| | || | Sbjct 65940 GCACAAGGCAGAGCATCGCAG--ACGAATTCTCTCTCGATATCAACTGCATCCGCTACGA 65997 Query 49907 TAGATCTAACGGTTTCTTCACTCGG-----TGGAT--GCAATAAA-TGTTTAAACATCAA 49958 | || | ||||| ||||| | || ||| | | ||| | | || Sbjct 65998 TTCCCCTGA----TTCTTTCCTCGGAAAGTTTCATCCGCAGAAGACTGT----AGAGTAA 66049 Query 49959 ACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAG 50018 || |||||||||||||| ||||| ||||||| |||| ||||| || || || || Sbjct 66050 GCAAGCGAAATCGCAGTGGAGACCTTCGTCTCGGGAGATTAACTCGTTCGAGAAGGTTAG 66109 Query 50019 TCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGA-CCCAGAAAAGA 50077 ||||||||| |||||||| || || | ||||||||| | |||||| ||| || || | Sbjct 66110 TCCGGGCATAAGGCCACGTTTCTTTAACCAAAATATCG-CGCAAAAACTCCCCGAGAAAA 66168 Query 50078 AGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATA--ACTG-GCGCTGTCAT 50134 | |||||||| || || ||||| || | | || || | | | | || ||| Sbjct 66169 ATATTCCTTCGACACAAGCGAAGGCGACTATACGTTCGGCAAAGGATTCCGAGCCGTCG- 66227 Query 50135 GTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCAT 50194 ||||| | ||||| | ||||||||||| || ||||| || ||||| || || Sbjct 66228 --ATCCAACGAAGTGCCCATTTGGCCTTCTTTTCAACGCAAGGAATTGTTTCGATTGCGC 66285 Query 50195 TAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACA 50254 |||||| ||| || ||||| || || | |||| |||| ||| |||||||||| Sbjct 66286 GAAAGAGTCTGTTCTTCTCATTGGAGTCCTTTATGTAAGACTCGAGCAAGAGACTATACA 66345 Query 50255 TTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAA 50314 | || || ||||| || || ||||| || || || ||||| || | || |||| || Sbjct 66346 TCTCGGAGTGAATATTCTCGATGGCGATTTGGAAACCGTAAAAGGCACGGGCTTCGGAAA 66405 Query 50315 TCTGCACTTCTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGGCTG 50374 |||| |||||| | ||||| | || | ||| || || || || ||| || | Sbjct 66406 TCTGAACTTCTTTCATGAATCGACCGGCGAGATTCTCCAAAACAATGCCATCAGAAGCGG 66465 Query 50375 CAAAAAACGCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTTAGTTTATTCCAAT 50434 | || || || | || || | || || || |||| ||| || || | ||| | Sbjct 66466 CGAAGAAGGCGAGAACGTGAGTGATGAAGTGACGCTCGTCGGGAGTGAGGGCTTCCCATT 66525 Query 50435 CATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTT 50494 | || || | ||||| ||| || || || | ||||| || || ||||||||||| | Sbjct 66526 GACGGAGGTCCTGAGATAGATCGACCTCCTCGGCGGTCCAGAAGGAAGCCTCTGCCTTCT 66585 Query 50495 TATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAATCTATTTGGATTTG 50554 | ||||| | ||| || | | | ||||| |||||||| || || | | |||||| | Sbjct 66586 TGTACATCTCCCAAATCTGAGGGTATTGAATTGGGAACATGCAGAAACGGTCTGGATTGG 66645 Query 50555 GTGCAAG 50561 ||||||| Sbjct 66646 GTGCAAG 66652 >seq39070 Length=11651 Score = 176 bits (194), Expect = 6e-39 Identities = 402/605 (66%), Gaps = 0/605 (0%) Strand=Plus/Minus Query 49957 AAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTG 50016 || || || || || || || || || || |||| | ||||| ||||| || || || Sbjct 7937 AAGCAGGCAAAGTCACAATGGAGGCCTTCATCTCGAGAAATTAACTCGTTCGAGAAGGTT 7878 Query 50017 AGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAGAAAAG 50076 | ||||||||| || || || || || ||||||||||| | ||| ||| || || Sbjct 7877 AATCCGGGCATAAGCCCCCGTTTCTTTAGCCAAAATATCGCACAAAAACTCCCCGAGAAA 7818 Query 50077 AAGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGCGCTGTCATGT 50136 || ||||| || || |||||||| || | | ||| || | | | ||| Sbjct 7817 AATATTCCCTCAACACAAGCAAAGGCGACGACACGCTCAGCAAAGGATTCCGAGCCATCG 7758 Query 50137 ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTA 50196 ||||| | ||||||| ||||||||||| |||||||| || || || || ||| | Sbjct 7757 ATCCAACGAAGTGCCCAATTGGCCTTCTTTTCAACACAAGGAATGGTCTCAATCGCACGA 7698 Query 50197 AAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATT 50256 ||||| | || || | ||| || | || | |||| ||| ||||||||||| Sbjct 7697 AAGAGCCTATGCTTCTCGTCTGAATCCTTTATGTAGGACTCGAGCAATAGACTATACATC 7638 Query 50257 TCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATC 50316 || || ||||| || || || || || ||||| ||||| || | ||||| | ||| Sbjct 7637 TCGGAGTGAATATTCTCGATAGCAATTTGAAAGCCGTAAAAGGCACGGGCCTCTGAAATT 7578 Query 50317 TGCACTTCTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCA 50376 || |||||| | ||||| | || | ||| || || || || ||| || ||| Sbjct 7577 TGAACTTCTTTCATGAATCGGCCGGCAAGATTCTCCAAAACAATACCATCAGAAGCGGCA 7518 Query 50377 AAAAACGCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTTAGTTTATTCCAATCA 50436 ||||| || | || || | || || || |||| ||| ||||| | ||| | Sbjct 7517 AAAAAGGCGAGAACGTGAGTGATGAAGTGACGCTCGTCGGGAGTTAGGGCTTCCCATTGG 7458 Query 50437 TTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTA 50496 || || | ||| | ||| ||||| || ||||||| || || ||||| ||||| || Sbjct 7457 CGGAGGTCCTGAGAGAGATCGACTTCCTCGGCTGTCCAGAAAGAGGCCTCGGCCTTCTTG 7398 Query 50497 TACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAATCTATTTGGATTTGGT 50556 ||||| | ||| || | | | ||||| |||||||| ||| |||| | |||||| || Sbjct 7397 TACATTTCCCAAATCTGAGGGTATTGAATTGGGAACATACAGAATCGGTCTGGATTGGGG 7338 Query 50557 GCAAG 50561 || || Sbjct 7337 GCGAG 7333 >seq67281 Length=7088 Score = 89.7 bits (98), Expect = 7e-13 Identities = 153/222 (69%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 80095 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCA 80154 ||||| ||||| | || | ||| |||| ||| | || | | |||||||| ||| ||| Sbjct 7043 CCTCCTTGATCAACATAACGAGCAGTGTCATTGAATACCCGTAGCATTGGAACAATGCCA 6984 Query 80155 TTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGAT 80214 |||||||| ||||| || || || || |||||| |||| || || || || ||| Sbjct 6983 TTGGATGTCCCATTTGTTCCTCGAATGTAACTTCCAGTGGCGCGGATGTTGTGAACAGAT 6924 Query 80215 AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATG 80274 | || || || || || ||| ||| | || ||| || | |||||||| || Sbjct 6923 ACGCCAATCCCTCCAGCTGATTTGCTGATAACAGCACATTCCTTAAGGGTATCATATATT 6864 Query 80275 CCCTCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCTA 80316 ||||| ||||| ||||| ||||| | ||||| |||||| Sbjct 6863 CCCTCAATGCTGTCATCTTTCATGCACACAAGAAAGCAGCTA 6822 >seq50219 Length=1725 Score = 89.7 bits (98), Expect = 7e-13 Identities = 153/222 (69%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 80095 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCA 80154 ||||| ||||| | || | ||| |||| ||| | || | | |||||||| ||| ||| Sbjct 1203 CCTCCTTGATCAACATAACGAGCAGTGTCATTGAATACCCGTAGCATTGGAACAATGCCA 1262 Query 80155 TTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGAT 80214 |||||||| ||||| || || || || |||||| |||| || || || || ||| Sbjct 1263 TTGGATGTCCCATTTGTTCCTCGAATGTAACTTCCAGTGGCGCGGATGTTGTGAACAGAT 1322 Query 80215 AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATG 80274 | || || || || || ||| ||| | || ||| || | |||||||| || Sbjct 1323 ACGCCAATCCCTCCAGCTGATTTGCTGATAACAGCACATTCCTTAAGGGTATCATATATT 1382 Query 80275 CCCTCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCTA 80316 ||||| ||||| ||||| ||||| | ||||| |||||| Sbjct 1383 CCCTCAATGCTGTCATCTTTCATGCACACAAGAAAGCAGCTA 1424 >seq42762 Length=1633 Score = 89.7 bits (98), Expect = 7e-13 Identities = 153/222 (69%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 80095 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCA 80154 ||||| ||||| | || | ||| |||| ||| | || | | |||||||| ||| ||| Sbjct 1111 CCTCCTTGATCAACATAACGAGCAGTGTCATTGAATACCCGTAGCATTGGAACAATGCCA 1170 Query 80155 TTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGAT 80214 |||||||| ||||| || || || || |||||| |||| || || || || ||| Sbjct 1171 TTGGATGTCCCATTTGTTCCTCGAATGTAACTTCCAGTGGCGCGGATGTTGTGAACAGAT 1230 Query 80215 AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATG 80274 | || || || || || ||| ||| | || ||| || | |||||||| || Sbjct 1231 ACGCCAATCCCTCCAGCTGATTTGCTGATAACAGCACATTCCTTAAGGGTATCATATATT 1290 Query 80275 CCCTCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCTA 80316 ||||| ||||| ||||| ||||| | ||||| |||||| Sbjct 1291 CCCTCAATGCTGTCATCTTTCATGCACACAAGAAAGCAGCTA 1332 >seq40763 Length=101153 Score = 89.7 bits (98), Expect = 7e-13 Identities = 153/222 (69%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 80095 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCA 80154 ||||| ||||| | || | ||| |||| ||| | || | | |||||||| ||| ||| Sbjct 101108 CCTCCTTGATCAACATAACGAGCAGTGTCATTGAATACCCGTAGCATTGGAACAATGCCA 101049 Query 80155 TTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGAT 80214 |||||||| ||||| || || || || |||||| |||| || || || || ||| Sbjct 101048 TTGGATGTCCCATTTGTTCCTCGAATGTAACTTCCAGTGGCGCGGATGTTGTGAACAGAT 100989 Query 80215 AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATG 80274 | || || || || || ||| ||| | || ||| || | |||||||| || Sbjct 100988 ACGCCAATCCCTCCAGCTGATTTGCTGATAACAGCACATTCCTTAAGGGTATCATATATT 100929 Query 80275 CCCTCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCTA 80316 ||||| ||||| ||||| ||||| | ||||| |||||| Sbjct 100928 CCCTCAATGCTGTCATCTTTCATGCACACAAGAAAGCAGCTA 100887 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 717556798095280