Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Catharanthus_20roseus_20[genbank_20GCA_5F000949345.1_202015-03-06] 79,302 sequences; 522,653,749 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq39070 131 2e-25 >seq39070 Length=11651 Score = 131 bits (144), Expect = 2e-25 Identities = 368/562 (65%), Gaps = 11/562 (2%) Strand=Plus/Minus Query 13868 TAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGT 13927 ||| || ||||| |||||||| ||||| ||||||| | ||| | ||||| || || || Sbjct 7938 TAAGCAGGCAAAGTCACAATGGAGGCCTTCATCTCGAGAAATTAACTCGTTCGAGAAGGT 7879 Query 13928 TAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCGGAAAA 13987 |||||| ||||| | || ||||| |||| ||||||||| ||| ||| ||| || || Sbjct 7878 TAATCCGGGCATAAGCCCCCGTTTCTTTAGCCAAAATATCGCACAAAAACTCCCCGAGAA 7819 Query 13988 GAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTT 14047 |||||||||||||| |||||| || | | || || |||| || || | Sbjct 7818 AAATATTCCCTCAACACAAGCAAAGGCGACGACACGCTCAGCAAAGGA-----TTCCGAG 7764 Query 14048 CGAT--ATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATA 14105 | || ||||| ||||| | | || |||| || | || || || ||||| Sbjct 7763 CCATCGATCCAACGAAGTGCCCAATTGGCCTTCTTTTCAACACAAGGAATGGTCTCAATC 7704 Query 14106 GCATTAAATAAATATTCCTTCTC--TTTAGTACTTGAAATGTATGTATCAATAAGTAAGC 14163 ||| ||| | | |||||| | | | ||| ||||| | || | | || | Sbjct 7703 GCACGAAAGAGCCTATGCTTCTCGTCTGAATCCTT--TATGTAGGACTCGAGCAATAGAC 7646 Query 14164 TATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTT 14223 ||||||| || ||||| || || || ||||| || ||||| || |||||| | || | Sbjct 7645 TATACATCTCGGAGTGAATATTCTCGATAGCAATTTGAAAGCCGTAAAAGGCACGGGCCT 7586 Query 14224 CCGACCATTGTACTTCCGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCAC 14283 | || ||| ||||| |||| |||| | ||| || ||| ||||||||| Sbjct 7585 CTGAAATTTGAACTTCTTTCATGAATCGGCCGGCAAGATTCTCCAAAACAATACCATCAG 7526 Query 14284 TAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGTTTTT 14343 ||| |||||||| || | | || | || |||| |||| || | || || Sbjct 7525 AAGCGGCAAAAAAGGCGAGAACGTGAGTGATGAAGTGACGCTCGTCGGGAGTTAGGGCTT 7466 Query 14344 TCCAATCGGATAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAG 14403 ||| | | | |||| ||| ||||| ||||| || ||||||| ||| || | | Sbjct 7465 CCCATTGGCGGAGGTCCTGAGAGAGATCGACTTCCTCGGCTGTCCAGAAAGAGGCCTCGG 7406 Query 14404 CTTTTTTATACATTACCCATAT 14425 | || || |||||| |||| || Sbjct 7405 CCTTCTTGTACATTTCCCAAAT 7384 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479252457626800