Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Catharanthus_20roseus_20[genbank_20GCA_5F000949345.1_202015-03-06] 79,302 sequences; 522,653,749 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq72241 93.3 3e-14 seq65811 84.2 2e-11 seq42370 82.4 6e-11 >seq72241 Length=55963 Score = 93.3 bits (102), Expect = 3e-14 Identities = 164/235 (70%), Gaps = 3/235 (1%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || || || ||||| | || | ||||| ||| |||||| || | ||| ||||||| Sbjct 40632 CCACCGCGGAGTCTGAGGACAAGATGGAGAGTAGACTCCTTCTGGATATTATAATCGGCG 40691 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | || || |||| || | |||||||||||| || || | ||||| ||||||| || Sbjct 40692 AGGGTTCGGCCGTCCTCGAGTTGTTTGCCGGCGAAGATTAGGCGCTGCTGATCGGGAGGG 40751 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGC-CTCGAC 43061 | || || || || ||| | ||||| || | | ||| ||| ||| |||||| Sbjct 40752 ATTCCCTCCTTGTCTTGAATCTTAGCCTTGACATTGTCGATTGTATCG-GAGCTCTCGAC 40810 Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT-TTTCTT 43115 || | || || || || |||||||| |||||||| || || ||||| |||||| Sbjct 40811 CTCAAGGGTAATTGTCTTACCGGTTAGGGTTTTCACGAAGATCTGCATCTTTCTT 40865 >seq65811 Length=66007 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || ||||| || | | |||||| || | ||| ||||| || | ||||| || | | Sbjct 54781 CCACCACGGAGACGAAGCACCAAGTGAAGGGTGGATTCCTTCTGAATGTTGTAGTCCGCC 54840 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 || || || |||| || | || || |||||||| ||||| | ||| || || | || Sbjct 54841 AAGGTGCGGCCGTCTTCAAGCTGCTTTCCGGCAAAGATCAACCTCTGCTGGTCTGGTGGA 54900 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGC-CTCGAC 43061 | ||| || || || ||| |||| || || ||| |||||| ||| ||| || Sbjct 54901 ATACCCTCCTTGTCTTGAATCTTGGCTTTCACGTTGTCAATGGTGTCGG-AGCTCTCAAC 54959 Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | || || ||||||||||| ||||| || ||||| |||||||| Sbjct 54960 CTCCAGGGTGATGGTTTTTCCGGTGAGAGTCTTGACAAAGATTTGCAT 55007 >seq42370 Length=41228 Score = 82.4 bits (90), Expect = 6e-11 Identities = 138/199 (69%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 42919 TCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAA 42978 ||||| || | || ||||||| | || || |||| ||||||||||||||||| || Sbjct 9940 TCCTTCTGTATGTTATAATCGGCTAGGGTTCGGCCGTCCTCCAATTGTTTGCCGGCGAAG 9881 Query 42979 ATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTG 43038 || | ||||| ||||| | || | ||| || || || |||| | ||||| | Sbjct 9880 ATAAGGCGCTGCTGATCCGGAGGGATACCCTCCTTATCTTGGATCTTAGCCTTGACATTA 9821 Query 43039 CCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACA 43098 ||| || ||| | ||| || || | ||||| || || || ||||| |||||||| Sbjct 9820 TCAATAGTATCGGAACTCTCAACCTCGAGAGTTATGGTCTTGCCTGTTAGGGTTTTCACG 9761 Query 43099 AAAATTTGCATTTTCTTAA 43117 || || |||| ||||||| Sbjct 9760 AAGATCTGCA--TTCTTAA 9744 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381001008903516