Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Catharanthus_20roseus_20[genbank_20GCA_5F000949345.1_202015-03-06]
79,302 sequences; 522,653,749 total letters
Query= NC_004062.1
Length=119217
Score E
Sequences producing significant alignments: (Bits) Value
seq72241 93.3 3e-14
seq65811 84.2 2e-11
seq42370 82.4 6e-11
>seq72241
Length=55963
Score = 93.3 bits (102), Expect = 3e-14
Identities = 164/235 (70%), Gaps = 3/235 (1%)
Strand=Plus/Plus
Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942
|| || || ||||| | || | ||||| ||| |||||| || | ||| |||||||
Sbjct 40632 CCACCGCGGAGTCTGAGGACAAGATGGAGAGTAGACTCCTTCTGGATATTATAATCGGCG 40691
Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002
| || || |||| || | |||||||||||| || || | ||||| ||||||| ||
Sbjct 40692 AGGGTTCGGCCGTCCTCGAGTTGTTTGCCGGCGAAGATTAGGCGCTGCTGATCGGGAGGG 40751
Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGC-CTCGAC 43061
| || || || || ||| | ||||| || | | ||| ||| ||| ||||||
Sbjct 40752 ATTCCCTCCTTGTCTTGAATCTTAGCCTTGACATTGTCGATTGTATCG-GAGCTCTCGAC 40810
Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT-TTTCTT 43115
|| | || || || || |||||||| |||||||| || || ||||| ||||||
Sbjct 40811 CTCAAGGGTAATTGTCTTACCGGTTAGGGTTTTCACGAAGATCTGCATCTTTCTT 40865
>seq65811
Length=66007
Score = 84.2 bits (92), Expect = 2e-11
Identities = 157/228 (69%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942
|| ||||| || | | |||||| || | ||| ||||| || | ||||| || | |
Sbjct 54781 CCACCACGGAGACGAAGCACCAAGTGAAGGGTGGATTCCTTCTGAATGTTGTAGTCCGCC 54840
Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002
|| || || |||| || | || || |||||||| ||||| | ||| || || | ||
Sbjct 54841 AAGGTGCGGCCGTCTTCAAGCTGCTTTCCGGCAAAGATCAACCTCTGCTGGTCTGGTGGA 54900
Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGC-CTCGAC 43061
| ||| || || || ||| |||| || || ||| |||||| ||| ||| ||
Sbjct 54901 ATACCCTCCTTGTCTTGAATCTTGGCTTTCACGTTGTCAATGGTGTCGG-AGCTCTCAAC 54959
Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109
|| | || || ||||||||||| ||||| || ||||| ||||||||
Sbjct 54960 CTCCAGGGTGATGGTTTTTCCGGTGAGAGTCTTGACAAAGATTTGCAT 55007
>seq42370
Length=41228
Score = 82.4 bits (90), Expect = 6e-11
Identities = 138/199 (69%), Gaps = 2/199 (1%)
Strand=Plus/Minus
Query 42919 TCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAA 42978
||||| || | || ||||||| | || || |||| ||||||||||||||||| ||
Sbjct 9940 TCCTTCTGTATGTTATAATCGGCTAGGGTTCGGCCGTCCTCCAATTGTTTGCCGGCGAAG 9881
Query 42979 ATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTG 43038
|| | ||||| ||||| | || | ||| || || || |||| | ||||| |
Sbjct 9880 ATAAGGCGCTGCTGATCCGGAGGGATACCCTCCTTATCTTGGATCTTAGCCTTGACATTA 9821
Query 43039 CCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACA 43098
||| || ||| | ||| || || | ||||| || || || ||||| ||||||||
Sbjct 9820 TCAATAGTATCGGAACTCTCAACCTCGAGAGTTATGGTCTTGCCTGTTAGGGTTTTCACG 9761
Query 43099 AAAATTTGCATTTTCTTAA 43117
|| || |||| |||||||
Sbjct 9760 AAGATCTGCA--TTCTTAA 9744
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 381001008903516
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |