Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Catharanthus_20roseus_20[genbank_20GCA_5F000949345.1_202015-03-06] 79,302 sequences; 522,653,749 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq35021 197 2e-45 seq39070 167 3e-36 >seq35021 Length=73443 Score = 197 bits (218), Expect = 2e-45 Identities = 588/900 (65%), Gaps = 14/900 (2%) Strand=Plus/Plus Query 41774 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCTTTCCTTCCAATGATATATTT 41833 ||||| ||||| ||||| | || ||||| ||||| ||||| || | ||| || | Sbjct 65760 TTTTGATATTCTCCCACTCTCTTCTCGAAGAAATTCGTCTTCCCCTGCAAACTAATCAAT 65819 Query 41834 TCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATC 41893 ||||| |||| || ||||| ||||||||| || ||| | ||||||| | || | Sbjct 65820 TCCATCCAATCGAATGGATTCAGAACATTATACATCTTTCGATATCCCAAAGCTTCAAGC 65879 Query 41894 AATCTATCTGCGATGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGT 41953 ||||| ||||| | |||||| || || |||| | || | ||||| || | || Sbjct 65880 AATCTGTCTGCAACGAATTCAATGTACTGGCTCATTAGATCTCCGTTCATACCAACTAGG 65939 Query 41954 TTAACTGGAAGAGC--CACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAA 42011 | || ||||| | ||| | |||||| || ||| || || || | || | Sbjct 65940 GCACAAGGCAGAGCATCGCAG--ACGAATTCTCTCTCGATATCAACTGCATCCGCTACGA 65997 Query 42012 TAGATCTTACTGTTTCTTCACTCGGTGGATACAAT----AAATGTTTAAACATCAAACAT 42067 | || ||| ||||| ||||| | || | | | | | | || || Sbjct 65998 T---TCCC-CTGATTCTTTCCTCGGAAAGTTTCATCCGCAGAAGACTGTAGAGTAAGCAA 66053 Query 42068 GCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCG 42127 |||||||||||||| ||||| || |||| ||||| ||||| || || || |||||| Sbjct 66054 GCGAAATCGCAGTGGAGACCTTCGTCTCGGGAGATTAACTCGTTCGAGAAGGTTAGTCCG 66113 Query 42128 GGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGAT-CCAGAAAAGAAGAT 42186 ||||| |||||||| || || | ||||||||| | |||||| | || || || || || Sbjct 66114 GGCATAAGGCCACGTTTCTTTAACCAAAATATCG-CGCAAAAACTCCCCGAGAAAAATAT 66172 Query 42187 TCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTGTCATGTATCCA 42246 |||||| || || ||||| | | | || || | | | | | ||||| Sbjct 66173 TCCTTCGACACAAGCGAAGGCGACTATACGTTCGGCAAAGGATTCCGAGCCGTCGATCCA 66232 Query 42247 CTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAG 42306 | ||||| | ||||||||||| || ||||| || ||||| || || |||||| Sbjct 66233 ACGAAGTGCCCATTTGGCCTTCTTTTCAACGCAAGGAATTGTTTCGATTGCGCGAAAGAG 66292 Query 42307 ATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGACTATACATTTCTGA 42366 ||| || ||||| || || | || | |||| ||| ||||||||||| || || Sbjct 66293 TCTGTTCTTCTCATTGGAGTCCTTTATGTAAGACTCGAGCAAGAGACTATACATCTCGGA 66352 Query 42367 ATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTGTAC 42426 ||||| || || ||||| || || || ||||| || | ||| |||| || ||| || Sbjct 66353 GTGAATATTCTCGATGGCGATTTGGAAACCGTAAAAGGCACGGGCTTCGGAAATCTGAAC 66412 Query 42427 TTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGGCTGCAAAAAA 42486 |||| | ||||| | || | ||| || || || || ||| || || || || Sbjct 66413 TTCTTTCATGAATCGACCGGCGAGATTCTCCAAAACAATGCCATCAGAAGCGGCGAAGAA 66472 Query 42487 CGCCAATACATGTTTTATAAAATATTTTTCGTCCGGTGTTAATTTATTCCAATCATTGAT 42546 || | || || | || || | ||||| || || | | ||| | | || Sbjct 66473 GGCGAGAACGTGAGTGATGAAGTGACGCTCGTCGGGAGTGAGGGCTTCCCATTGACGGAG 66532 Query 42547 ATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGCCTTTTTATACAT 42606 || | ||||| ||| || || || | ||||| || || || |||||||| || ||||| Sbjct 66533 GTCCTGAGATAGATCGACCTCCTCGGCGGTCCAGAAGGAAGCCTCTGCCTTCTTGTACAT 66592 Query 42607 ATTCCAGATATCATGATATTGAATTGGGAAAATAACAAATCTATTTGGATTTGGTGCAAG 42666 | ||| || | | | |||||||||||||| || || | | |||||| |||||||| Sbjct 66593 CTCCCAAATCTGAGGGTATTGAATTGGGAACATGCAGAAACGGTCTGGATTGGGTGCAAG 66652 >seq39070 Length=11651 Score = 167 bits (184), Expect = 3e-36 Identities = 402/606 (66%), Gaps = 2/606 (0%) Strand=Plus/Minus Query 42062 AAACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTG 42121 || || || || || || || || || ||||||| | |||||| ||||| || || || Sbjct 7937 AAGCAGGCAAAGTCACAATGGAGGCCTTCATCTCGAGAAATTAACTCGTTCGAGAAGGTT 7878 Query 42122 AGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCA-GAAAA 42180 | ||||||||| || || || || || ||||||||||| | | |||| ||| || || Sbjct 7877 AATCCGGGCATAAGCCCCCGTTTCTTTAGCCAAAATATCG-CACAAAAACTCCCCGAGAA 7819 Query 42181 GAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTGTCATG 42240 || ||||| || || |||||||| | | | ||| || | | | ||| Sbjct 7818 AAATATTCCCTCAACACAAGCAAAGGCGACGACACGCTCAGCAAAGGATTCCGAGCCATC 7759 Query 42241 TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATT 42300 ||||| | ||||||| ||||||||||| |||||||| || || || || ||| Sbjct 7758 GATCCAACGAAGTGCCCAATTGGCCTTCTTTTCAACACAAGGAATGGTCTCAATCGCACG 7699 Query 42301 AAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGACTATACAT 42360 |||||| | || || | ||| || | || | |||| ||| ||||||||||| Sbjct 7698 AAAGAGCCTATGCTTCTCGTCTGAATCCTTTATGTAGGACTCGAGCAATAGACTATACAT 7639 Query 42361 TTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTAAC 42420 || || ||||| || || || || || ||||| ||||| || | |||||| | || Sbjct 7638 CTCGGAGTGAATATTCTCGATAGCAATTTGAAAGCCGTAAAAGGCACGGGCCTCTGAAAT 7579 Query 42421 CTGTACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGGCTGC 42480 || |||||| | ||||| | || | ||| || || || || ||| || || Sbjct 7578 TTGAACTTCTTTCATGAATCGGCCGGCAAGATTCTCCAAAACAATACCATCAGAAGCGGC 7519 Query 42481 AAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCCGGTGTTAATTTATTCCAATC 42540 |||||| || | || || | || || | ||||| || |||| | ||| | Sbjct 7518 AAAAAAGGCGAGAACGTGAGTGATGAAGTGACGCTCGTCGGGAGTTAGGGCTTCCCATTG 7459 Query 42541 ATTGATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGCCTTTTT 42600 || || | ||| | ||| ||||| || | ||||| || || || || ||||| || Sbjct 7458 GCGGAGGTCCTGAGAGAGATCGACTTCCTCGGCTGTCCAGAAAGAGGCCTCGGCCTTCTT 7399 Query 42601 ATACATATTCCAGATATCATGATATTGAATTGGGAAAATAACAAATCTATTTGGATTTGG 42660 ||||| | ||| || | | | |||||||||||||| ||| |||| | |||||| || Sbjct 7398 GTACATTTCCCAAATCTGAGGGTATTGAATTGGGAACATACAGAATCGGTCTGGATTGGG 7339 Query 42661 TGCAAG 42666 || || Sbjct 7338 GGCGAG 7333 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 670473916489520