Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Catharanthus_20roseus_20[genbank_20GCA_5F000949345.1_202015-03-06] 79,302 sequences; 522,653,749 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq73807 100 3e-16 seq67817 91.5 1e-13 seq64144 84.2 2e-11 >seq73807 Length=69832 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 142957 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 143016 |||||| | |||||||| || ||||| | || || || ||||| ||||| ||||| Sbjct 38927 GCCTCCCCTCAAACGCAACACCAAATGCAGAGTTGACTCCTTTTGGATGTTATAATCAGC 38986 Query 143017 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 | ||| || || || || |||||||| ||| | |||||||| ||||| || || || Sbjct 38987 AAGTGTCCTACCATCCTCAAGCTGTTTACCGGCAAATATCAGACGCTGCTGGTCAGGGGG 39046 Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136 |||||||||||||| ||| || || | | || | ||| || | | |||||| Sbjct 39047 AATGCCTTCTTTGTCTTGAATCTTAGCCTTAACGTTATCAATCGTATCAGAGCTTTCTAC 39106 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 ||| | || || ||||| || || | || || || || || ||||| Sbjct 39107 TTCTAGGGTAACGGTCTTCCCAGTAAGAGTCTTGACAAAGATCTGCAT 39154 Score = 82.4 bits (90), Expect = 8e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 142957 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 143016 ||| || || | |||||||| | |||| || || || ||||| || ||||| || Sbjct 39383 GCCACCACGGAGTCGCAAAACAAGGTGAAGGGTGGACTCCTTTTGAATATTGTAGTCTGC 39442 Query 143017 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 | || | || || || ||||| |||||| | |||| |||||||||||| || || Sbjct 39443 AAGGGTACGGCCATCCTCAAGCTGTTTCCCAGCAAAAATCAAACGTTGCTGATCAGGGGG 39502 Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136 || || || ||||| |||||| ||| | | || | ||||| | | ||| || Sbjct 39503 AATTCCCTCCTTGTCCTGAATTTTGGCTTTGACATTGTCAATTGTGTCTGAGCTTTCGAC 39562 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 ||| | || | ||||| || |||| || || ||||| |||||||| Sbjct 39563 TTCCAGGGTGATGGTCTTTCCTGTCAGGGTCTTAACGAAGATTTGCAT 39610 >seq67817 Length=4127 Score = 91.5 bits (100), Expect = 1e-13 Identities = 144/204 (71%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 142982 TGAATTGTAGATTCTTTTTGTATGTTGTAATC-GCTCATTGTGCTCGAGTCTTCGAGTTG 143040 ||||| || ||||| || || |||||||| || ||| | ||| || ||||||||||||| Sbjct 1411 TGAATGGTGGATTCCTTCTGGATGTTGTAGTCAGCT-AGTGTTCTGTAGTCTTCGAGTTG 1469 Query 143041 TTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTT 143100 || || || |||| ||||| ||||| || || || ||||| || ||||| | |||||| Sbjct 1470 CTTCCCGGCGAAGATGAGACGCTGCTGGTCTGGTGGGATGCCCTCCTTGTCCGAAATTTT 1529 Query 143101 TTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGT 143160 || | | || | || | | || ||| || |||| || | ||||| || || Sbjct 1530 GGCCTTGACATTGTCAATGGTATTGGAGGATTCGACCTCAAGGGTGATGGTCTTCCCCGT 1589 Query 143161 CAATGTTTTTACGAATATTTGCAT 143184 | ||||| ||||| || | ||| Sbjct 1590 GAGGGTTTTCACGAAGATCTACAT 1613 >seq64144 Length=11632 Score = 84.2 bits (92), Expect = 2e-11 Identities = 139/198 (70%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 142988 GTAGATTCTTTTTGTATGTTGTAATC-GCTCATTGTGCTCGAGTCTTCGAGTTGTTTACC 143046 || ||||| || || |||||||| || ||| | ||| || |||||||||||| || || Sbjct 9124 GTGGATTCCTTATGGATGTTGTAGTCAGCT-AGTGTTCTGCTGTCTTCGAGTTGCTTCCC 9182 Query 143047 AGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTT 143106 || ||| ||||| ||||| || | || ||||| || ||||| | |||||| || Sbjct 9183 GGCGAAGAGGAGACGCTGCTGGTCTAGTGGGATGCCGTCCTTGTCCGAAATTTTGGCCTT 9242 Query 143107 TAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGT 143166 | | || | || || | || ||| || |||| ||| | ||||| || || | || Sbjct 9243 GACATTGTCAATGGTATCGGAGGATTCAACCTCAAGAGTGATGGTCTTCCCCGTGAGGGT 9302 Query 143167 TTTTACGAATATTTGCAT 143184 ||| ||||| || ||||| Sbjct 9303 TTTCACGAAGATCTGCAT 9320 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 506511809300640