Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Catharanthus_20roseus_20[genbank_20GCA_5F000949345.1_202015-03-06]
79,302 sequences; 522,653,749 total letters
Query= NC_004156.2
Length=231621
Score E
Sequences producing significant alignments: (Bits) Value
seq39070 143 4e-29
seq35021 129 9e-25
>seq39070
Length=11651
Score = 143 bits (158), Expect = 4e-29
Identities = 372/558 (67%), Gaps = 12/558 (2%)
Strand=Plus/Plus
Query 125019 ATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTG 125078
||||||||||||||||| ||||| ||||||| || ||||| | ||| || ||||||||
Sbjct 7384 ATTTGGGAAATGTACAAGAAGGCCGAGGCCTCTTTCTGGACAGCCGAGGAAGTCGATCTC 7443
Query 125079 TCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTATATCG 125138
|| ||||||| | | ||||| | | | ||| ||||| | || || |
Sbjct 7444 TCTCAGGACCTCCGCCAATGGGAAGCCC---TAACTCCCGACGAGCGTCACTTCATCACT 7500
Query 125139 CACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCT-GTTGACACG 125197
||| || | ||||| ||||||| || ||||| || || || ||||| | | | ||
Sbjct 7501 CACGTTCTCGCCTTTTTTGCCGCTTCTGATGGTATTGTTTTGGAGAATCTTGCCGGC-CG 7559
Query 125198 ATTCTCTCAAGA-GTTGACCATTCCAGAGGTGTCGTGC-TTTTACGGATTCCAAATCATG 125255
|||| |||| ||| | ||| |||||| ||||| |||||||| || |||||
Sbjct 7560 ATTCATGAAAGAAGTTCAA-ATTTCAGAGGCC-CGTGCCTTTTACGGCTTTCAAATTGCT 7617
Query 125256 ATTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACATTCGCGATCCG 125315
|| ||||| | ||||| || ||||| | | || | || ||||| ||| |
Sbjct 7618 ATCGAGAATATTCACTCCGAGATGTATAGTCTATTGCTCGAGTCCTACATAAAGGATTCA 7677
Query 125316 CAACGTAAACACATGCTCTTTAACGCAATCGACACGGTGCCGTCTATACGTAAAAAGGCT 125375
| || || | ||||||| || || || || | || | | | || |||||
Sbjct 7678 GACGAGAAGCATAGGCTCTTTCGTGCGATTGAGACCATTCCTTGTGTTGAAAAGAAGGCC 7737
Query 125376 CAATGGGTGATTCGGTGGATCGATGACGACAAGTCTTCGTACGCCGACAGACTGGTGGCA 125435
| |||| |||| |||||||||| | | || | || || | | || ||
Sbjct 7738 AATTGGGCACTTCGTTGGATCGATGGCTCGGAATCCTTT---GCTGAGCGTGTCGTCGCC 7794
Query 125436 TTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGGCTCAAG 125495
|| || || ||||| || || || ||||| |||||| || || |||||||| |||
Sbjct 7795 TTTGCTTGTGTTGAGGGAATATTTTTCTCGGGGAGTTTTTGTGCGATATTTTGGCTAAAG 7854
Query 125496 AAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACGAGGGC 125555
|| || || || ||||||||| | || | |||||||| || |||||||| || |||
Sbjct 7855 AAACGGGGGCTTATGCCCGGATTAACCTTCTCGAACGAGTTAATTTCTCGAGATGAAGGC 7914
Query 125556 CTACACTGTGACTTTGCC 125573
|| || ||||||||||||
Sbjct 7915 CTCCATTGTGACTTTGCC 7932
>seq35021
Length=73443
Score = 129 bits (142), Expect = 9e-25
Identities = 370/561 (66%), Gaps = 20/561 (4%)
Strand=Plus/Minus
Query 125019 ATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTG 125078
|||||||| |||||||| ||||| |||| ||||| ||||| | ||| |||||||||||
Sbjct 66601 ATTTGGGAGATGTACAAGAAGGCAGAGGCTTCCTTCTGGACCGCCGAGGAGGTCGATCTA 66542
Query 125079 TCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTATATCG 125138
|| ||||||| | ||||| | | | ||| ||||| | || || |
Sbjct 66541 TCTCAGGACCTCCGTCAATGGGAAGCCC---TCACTCCCGACGAGCGTCACTTCATCACT 66485
Query 125139 CACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCTGTTGACACGA 125198
||| || | |||||||| |||| || ||||| || || || ||||| |||
Sbjct 66484 CACGTTCTCGCCTTCTTCGCCGCTTCTGATGGCATTGTTTTGGAGAATCTCGCCGGTCGA 66425
Query 125199 TTCTCTCAAGA-GTTGACCATTCCAGAGGTGTCGTGC-TTTTACGGATTCCAAATCATGA 125256
||| |||| ||| | |||| || ||||| |||||||| ||||||||| |
Sbjct 66424 TTCATGAAAGAAGTTCAGATTTCCGAAGCC--CGTGCCTTTTACGGTTTCCAAATCGCCA 66367
Query 125257 TTGAGAACGTGCACTCGGAAATGTA----CTCTACACTGATTGACATGTACATTCGCGAT 125312
| ||||| | ||||| || ||||| |||| || | || ||||| ||
Sbjct 66366 TCGAGAATATTCACTCCGAGATGTATAGTCTCT----TGCTCGAGTCTTACATAAAGGAC 66311
Query 125313 CCGCAACGTAAACA-CATGCTCTTTAACGCAATCGACACGGTGCCGTCTATACGTAAAAA 125371
| ||| | || | || |||||| ||||||||| || | || | | || ||
Sbjct 66310 TC-CAATGAGAAGAACAGACTCTTTCGCGCAATCGAAACAATTCCTTGCGTTGAAAAGAA 66252
Query 125372 GGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGTCTTCGTACGCCGACAGACTGGT 125431
||| |||||| |||| |||||||| || | | || | ||||| | | ||
Sbjct 66251 GGCCAAATGGGCACTTCGTTGGATCGA---CGGCTCGGAATCCTTTGCCGAACGTATAGT 66195
Query 125432 GGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGGCT 125491
|| ||||| || || || || || || ||||| |||||| || || |||||| |
Sbjct 66194 CGCCTTCGCTTGTGTCGAAGGAATATTTTTCTCGGGGAGTTTTTGCGCGATATTTTGGTT 66135
Query 125492 CAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACGA 125551
||||| || || || ||||||||||| || | |||||||| || || ||||||||
Sbjct 66134 AAAGAAACGTGGCCTTATGCCCGGACTAACCTTCTCGAACGAGTTAATCTCCCGAGACGA 66075
Query 125552 GGGCCTACACTGTGACTTTGC 125572
|| || ||||| || || ||
Sbjct 66074 AGGTCTCCACTGCGATTTCGC 66054
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 740324606541520
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |