Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Catharanthus_20roseus_20[genbank_20GCA_5F000949345.1_202015-03-06] 79,302 sequences; 522,653,749 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq39070 143 4e-29 seq35021 129 9e-25 >seq39070 Length=11651 Score = 143 bits (158), Expect = 4e-29 Identities = 372/558 (67%), Gaps = 12/558 (2%) Strand=Plus/Plus Query 125019 ATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTG 125078 ||||||||||||||||| ||||| ||||||| || ||||| | ||| || |||||||| Sbjct 7384 ATTTGGGAAATGTACAAGAAGGCCGAGGCCTCTTTCTGGACAGCCGAGGAAGTCGATCTC 7443 Query 125079 TCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTATATCG 125138 || ||||||| | | ||||| | | | ||| ||||| | || || | Sbjct 7444 TCTCAGGACCTCCGCCAATGGGAAGCCC---TAACTCCCGACGAGCGTCACTTCATCACT 7500 Query 125139 CACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCT-GTTGACACG 125197 ||| || | ||||| ||||||| || ||||| || || || ||||| | | | || Sbjct 7501 CACGTTCTCGCCTTTTTTGCCGCTTCTGATGGTATTGTTTTGGAGAATCTTGCCGGC-CG 7559 Query 125198 ATTCTCTCAAGA-GTTGACCATTCCAGAGGTGTCGTGC-TTTTACGGATTCCAAATCATG 125255 |||| |||| ||| | ||| |||||| ||||| |||||||| || ||||| Sbjct 7560 ATTCATGAAAGAAGTTCAA-ATTTCAGAGGCC-CGTGCCTTTTACGGCTTTCAAATTGCT 7617 Query 125256 ATTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACATTCGCGATCCG 125315 || ||||| | ||||| || ||||| | | || | || ||||| ||| | Sbjct 7618 ATCGAGAATATTCACTCCGAGATGTATAGTCTATTGCTCGAGTCCTACATAAAGGATTCA 7677 Query 125316 CAACGTAAACACATGCTCTTTAACGCAATCGACACGGTGCCGTCTATACGTAAAAAGGCT 125375 | || || | ||||||| || || || || | || | | | || ||||| Sbjct 7678 GACGAGAAGCATAGGCTCTTTCGTGCGATTGAGACCATTCCTTGTGTTGAAAAGAAGGCC 7737 Query 125376 CAATGGGTGATTCGGTGGATCGATGACGACAAGTCTTCGTACGCCGACAGACTGGTGGCA 125435 | |||| |||| |||||||||| | | || | || || | | || || Sbjct 7738 AATTGGGCACTTCGTTGGATCGATGGCTCGGAATCCTTT---GCTGAGCGTGTCGTCGCC 7794 Query 125436 TTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGGCTCAAG 125495 || || || ||||| || || || ||||| |||||| || || |||||||| ||| Sbjct 7795 TTTGCTTGTGTTGAGGGAATATTTTTCTCGGGGAGTTTTTGTGCGATATTTTGGCTAAAG 7854 Query 125496 AAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACGAGGGC 125555 || || || || ||||||||| | || | |||||||| || |||||||| || ||| Sbjct 7855 AAACGGGGGCTTATGCCCGGATTAACCTTCTCGAACGAGTTAATTTCTCGAGATGAAGGC 7914 Query 125556 CTACACTGTGACTTTGCC 125573 || || |||||||||||| Sbjct 7915 CTCCATTGTGACTTTGCC 7932 >seq35021 Length=73443 Score = 129 bits (142), Expect = 9e-25 Identities = 370/561 (66%), Gaps = 20/561 (4%) Strand=Plus/Minus Query 125019 ATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTG 125078 |||||||| |||||||| ||||| |||| ||||| ||||| | ||| ||||||||||| Sbjct 66601 ATTTGGGAGATGTACAAGAAGGCAGAGGCTTCCTTCTGGACCGCCGAGGAGGTCGATCTA 66542 Query 125079 TCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTATATCG 125138 || ||||||| | ||||| | | | ||| ||||| | || || | Sbjct 66541 TCTCAGGACCTCCGTCAATGGGAAGCCC---TCACTCCCGACGAGCGTCACTTCATCACT 66485 Query 125139 CACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCTGTTGACACGA 125198 ||| || | |||||||| |||| || ||||| || || || ||||| ||| Sbjct 66484 CACGTTCTCGCCTTCTTCGCCGCTTCTGATGGCATTGTTTTGGAGAATCTCGCCGGTCGA 66425 Query 125199 TTCTCTCAAGA-GTTGACCATTCCAGAGGTGTCGTGC-TTTTACGGATTCCAAATCATGA 125256 ||| |||| ||| | |||| || ||||| |||||||| ||||||||| | Sbjct 66424 TTCATGAAAGAAGTTCAGATTTCCGAAGCC--CGTGCCTTTTACGGTTTCCAAATCGCCA 66367 Query 125257 TTGAGAACGTGCACTCGGAAATGTA----CTCTACACTGATTGACATGTACATTCGCGAT 125312 | ||||| | ||||| || ||||| |||| || | || ||||| || Sbjct 66366 TCGAGAATATTCACTCCGAGATGTATAGTCTCT----TGCTCGAGTCTTACATAAAGGAC 66311 Query 125313 CCGCAACGTAAACA-CATGCTCTTTAACGCAATCGACACGGTGCCGTCTATACGTAAAAA 125371 | ||| | || | || |||||| ||||||||| || | || | | || || Sbjct 66310 TC-CAATGAGAAGAACAGACTCTTTCGCGCAATCGAAACAATTCCTTGCGTTGAAAAGAA 66252 Query 125372 GGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGTCTTCGTACGCCGACAGACTGGT 125431 ||| |||||| |||| |||||||| || | | || | ||||| | | || Sbjct 66251 GGCCAAATGGGCACTTCGTTGGATCGA---CGGCTCGGAATCCTTTGCCGAACGTATAGT 66195 Query 125432 GGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGGCT 125491 || ||||| || || || || || || ||||| |||||| || || |||||| | Sbjct 66194 CGCCTTCGCTTGTGTCGAAGGAATATTTTTCTCGGGGAGTTTTTGCGCGATATTTTGGTT 66135 Query 125492 CAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACGA 125551 ||||| || || || ||||||||||| || | |||||||| || || |||||||| Sbjct 66134 AAAGAAACGTGGCCTTATGCCCGGACTAACCTTCTCGAACGAGTTAATCTCCCGAGACGA 66075 Query 125552 GGGCCTACACTGTGACTTTGC 125572 || || ||||| || || || Sbjct 66074 AGGTCTCCACTGCGATTTCGC 66054 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 740324606541520