Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Catharanthus_20roseus_20[genbank_20GCA_5F000949345.1_202015-03-06]
79,302 sequences; 522,653,749 total letters
Query= NC_004690.1
Length=113220
Score E
Sequences producing significant alignments: (Bits) Value
seq42370 120 2e-22
seq73807 107 1e-18
seq53817 105 5e-18
seq72241 102 6e-17
seq65811 91.5 1e-13
>seq42370
Length=41228
Score = 120 bits (132), Expect = 2e-22
Identities = 165/228 (72%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196
|||||||||| | | || | |||||||||||| || ||||| ||||| ||||| |
Sbjct 10660 CCACCTCTCAGACGCAGCACCAGATGAAGGGTGGACTCCTTTTGAATGTTATAATCAGCT 10601
Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256
||| |||| | ||||| || || || || || | ||||| | || ||||| |||
Sbjct 10600 AGAGTTCTGCCATCTTCCAACTGCTTCCCGGCAAAGATCAATCTCTGCTGGTCCGGAGGA 10541
Query 15257 ATTCCTTCTTTGTCACAAAT-TTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTAC 15315
|| ||||| || || ||| ||||| ||| ||| | || || ||||| | |||| ||
Sbjct 10540 ATCCCTTCCTTATCCTGAATCTTTGC-CTTAACATTATCAATTGTATCAGAACTTTCAAC 10482
Query 15316 ATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363
|| | |||||||||||||| || || || || |||||||| |||||
Sbjct 10481 CTCAAGAGTAATGGTTTTACCAGTGAGGGTCTTAACAAAAATCTGCAT 10434
Score = 86.0 bits (94), Expect = 5e-12
Identities = 145/210 (69%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 15154 AACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTC 15213
||| | ||||||||| || || || |||||||| |||||| ||| ||| |||| ||
Sbjct 9959 AACAAGATGAAGGGTTGATTCCTTCTGTATGTTATAATCGGCTAGGGTTCGGCCGTCCTC 9900
Query 15214 TAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACA 15273
||||||||||| ||| | || | || || || || || || || || || ||
Sbjct 9899 CAATTGTTTGCCGGCGAAGATAAGGCGCTGCTGATCCGGAGGGATACCCTCCTTATCTTG 9840
Query 15274 AATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTT 15333
|| || ||| ||| | || || |||||| | | || || || | || ||||| ||
Sbjct 9839 GATCTTAGCCTTGACATTATCAATAGTATCGGAACTCTCAACCTCGAGAGTTATGGTCTT 9780
Query 15334 ACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363
||||| || ||||| || || || |||||
Sbjct 9779 GCCTGTTAGGGTTTTCACGAAGATCTGCAT 9750
>seq73807
Length=69832
Score = 107 bits (118), Expect = 1e-18
Identities = 161/229 (70%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 15135 TGCCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGC 15194
||||||| | | ||| || || | ||| |||||||| || |||||||||||||| ||
Sbjct 39610 TGCCACCACGAAGTCTCAAGACAAGATGGAGGGTGGACTCCTTTTGTATGTTGTAGTCTG 39669
Query 15195 TTAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTG 15254
|| | | | || || | |||||| || ||| | ||||| | ||| ||||| |
Sbjct 39670 CAAGGGTACGGCCATCCTCCAGTTGTTTCCCTGCGAAAATCAATCTTTGCTGGTCTGGGG 39729
Query 15255 GAATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTA 15314
||||||| || ||||| |||||| || ||| | || || || || |||| |
Sbjct 39730 GAATTCCCTCCTTGTCCTGGATTTTGGCTTTGACATTGTCAATTGTGTCTGAGCTTTCAA 39789
Query 15315 CATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363
| || | ||| ||||| || |||||||| || || ||||| ||||||||
Sbjct 39790 CTTCAAGGGTGATGGTCTTTCCTGTCAGGGTCTTAACAAAGATTTGCAT 39838
Score = 102 bits (112), Expect = 6e-17
Identities = 160/229 (70%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 15135 TGCCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGC 15194
|||| || ||||| | || || ||||| || || || || ||||| ||||| |||||
Sbjct 38926 TGCCTCCCCTCAAACGCAACACCAAATGCAGAGTTGACTCCTTTTGGATGTTATAATCAG 38985
Query 15195 TTAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTG 15254
|| | || | || || | ||||| || || |||||| ||| || ||||| |
Sbjct 38986 CAAGTGTCCTACCATCCTCAAGCTGTTTACCGGCAAATATCAGACGCTGCTGGTCAGGGG 39045
Query 15255 GAATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTA 15314
|||| ||||||||||| ||| || ||| || | || || ||||| ||||||
Sbjct 39046 GAATGCCTTCTTTGTCTTGAATCTTAGCCTTAACGTTATCAATCGTATCAGAGCTTTCTA 39105
Query 15315 CATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363
| |||| ||||| ||| || || || ||||| || ||||| || |||||
Sbjct 39106 CTTCTAGGGTAACGGTCTTCCCAGTAAGAGTCTTGACAAAGATCTGCAT 39154
Score = 98.7 bits (108), Expect = 7e-16
Identities = 159/229 (69%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 15135 TGCCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGC 15194
||||||| | | || ||||| | ||||||||||| || ||||| || ||||| ||
Sbjct 39382 TGCCACCACGGAGTCGCAAAACAAGGTGAAGGGTGGACTCCTTTTGAATATTGTAGTCTG 39441
Query 15195 TTAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTG 15254
|| | | | || || | ||||| ||||| | ||||||||||| || || |
Sbjct 39442 CAAGGGTACGGCCATCCTCAAGCTGTTTCCCAGCAAAAATCAAACGTTGCTGATCAGGGG 39501
Query 15255 GAATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTA 15314
||||||| || ||||| ||||||| || ||| | || || || || |||| |
Sbjct 39502 GAATTCCCTCCTTGTCCTGAATTTTGGCTTTGACATTGTCAATTGTGTCTGAGCTTTCGA 39561
Query 15315 CATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363
| || | ||| ||||| || |||||||| || || || || ||||||||
Sbjct 39562 CTTCCAGGGTGATGGTCTTTCCTGTCAGGGTCTTAACGAAGATTTGCAT 39610
Score = 95.1 bits (104), Expect = 9e-15
Identities = 157/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196
||||| | | ||| || || | ||||| ||||| || ||||| || ||||| ||
Sbjct 39156 CCACCACGGAGTCTCAAGACAAGGTGAAGTGTGGACTCCTTTTGGATATTGTAGTCTGCC 39215
Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256
|| | | | || || | |||||| || || | ||||| ||||| ||||| |||
Sbjct 39216 AGGGTACGGCCATCCTCAAGTTGTTTCCCTGCAAAAATCAAGCGTTGCTGGTCTGGGGGA 39275
Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316
||||| || ||||| ||||||| || || | || || || || |||| ||
Sbjct 39276 ATTCCCTCCTTGTCCTGAATTTTGGCTTTAACGTTGTCAATTGTGTCTGAGCTTTCAACT 39335
Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363
|| | ||||||||| || ||||||||||| || ||||| || |||||
Sbjct 39336 TCAAGGGTAATGGTCTTTCCTGTCAGAGTCTTGACAAAGATCTGCAT 39382
Score = 87.8 bits (96), Expect = 1e-12
Identities = 159/230 (69%), Gaps = 2/230 (1%)
Strand=Plus/Plus
Query 15135 TGCCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGC 15194
||||||| | | || || || | ||| |||||||| || ||||||||||| |||||
Sbjct 39838 TGCCACCCCGAAGCCTCAAGACAAGATGGAGGGTGGACTCCTTTTGTATGTTATAATCTG 39897
Query 15195 TTAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTG 15254
|| | | | || || | |||||||||||| | ||||| | || || || |
Sbjct 39898 CAAGGGTACGACCATCCTCCAGTTGTTTGCCAGCAAAGATCAATCTCTGCTGATCAGGGG 39957
Query 15255 GAATTCCTTCTTTGTC-ACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCT 15313
|||||||||| ||||| || ||||||| || ||| | || || || || | | |||
Sbjct 39958 GAATTCCTTCCTTGTCTTGAATTTTTGCT-TTGACATTATCAATAGTGTCAGAACTCTCT 40016
Query 15314 ACATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363
|| || | || || || || || || || || || ||||| || |||||
Sbjct 40017 ACTTCGAGAGTTATTGTCTTGCCAGTGAGGGTCTTAACAAAGATCTGCAT 40066
>seq53817
Length=15024
Score = 105 bits (116), Expect = 5e-18
Identities = 148/208 (71%), Gaps = 0/208 (0%)
Strand=Plus/Plus
Query 15161 TGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGT 15220
||||||||||| || || || |||||||| || |||| |||| ||||||| | ||
Sbjct 3654 TGAAGGGTGGATTCCTTCTGGATGTTGTAGTCAGCTAGAGTTCTGCCGTCTTCGAGCTGC 3713
Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTG 15280
|| || ||| | || | ||| || ||||| ||| || || || ||||| |||||||
Sbjct 3714 TTACCGGCGAAGATGAGACGCTGCTGGTCCGGTGGGATGCCCTCCTTGTCCTGAATTTTG 3773
Query 15281 CTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTC 15340
||| ||| | || |||||||| ||| || || | ||| ||||| || || ||
Sbjct 3774 GCCTTGACATTGTCAATGGTATCCGAGGATTCGACCTCAAGGGTGATGGTCTTCCCCGTG 3833
Query 15341 AGAGTTTTTACAAAAATTTGCATATTTG 15368
|| ||||| || || || ||||| ||||
Sbjct 3834 AGGGTTTTCACGAAGATCTGCATTTTTG 3861
>seq72241
Length=55963
Score = 102 bits (112), Expect = 6e-17
Identities = 145/204 (71%), Gaps = 0/204 (0%)
Strand=Plus/Plus
Query 15161 TGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGT 15220
|| |||||||| || || || || |||||||| ||| | | | | ||||| | ||
Sbjct 39744 TGCAGGGTGGACTCCTTCTGGATATTGTAATCAGCCAGAGTACGCCCATCTTCAAGCTGC 39803
Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTG 15280
|| |||||| |||| | | || || || |||||||| |||||||| ||| |||
Sbjct 39804 TTTCCAGCGAATATAAGCCTCTGCTGATCCGGGGGAATTCCCTCTTTGTCCTGAATCTTG 39863
Query 15281 CTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTC 15340
|||| ||| | ||||||||||| | | || || ||||| ||||| || || || |||
Sbjct 39864 GTCTTCACATTATCTATGGTATCTGAACTCTCAACCTCTAACGTAATCGTCTTCCCAGTC 39923
Query 15341 AGAGTTTTTACAAAAATTTGCATA 15364
| || || ||||| || ||||||
Sbjct 39924 AATGTCTTCACAAATATCTGCATA 39947
Score = 98.7 bits (108), Expect = 7e-16
Identities = 153/216 (71%), Gaps = 2/216 (1%)
Strand=Plus/Plus
Query 15149 CTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCG 15208
|| || || | ||| ||||| || || || || || |||||||| || |||| ||
Sbjct 40188 CTCAAGACAAGATGTAGGGTTGACTCCTTCTGAATATTGTAATCCGCAAGGGTTCTACCG 40247
Query 15209 TCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTG 15268
||||| | || || || ||| | || | || || || || ||||||||||| ||
Sbjct 40248 TCTTCCAGCTGCTTCCCGGCGAAAATTAGGCGCTGCTGATCAGGAGGAATTCCTTCCTTA 40307
Query 15269 TCACAAAT-TTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAAT 15327
|| ||| ||||| ||| || | || || ||||| | |||| || || | || ||
Sbjct 40308 TCTTGAATCTTTGC-CTTAACGTTGTCAATAGTATCAGAACTTTCCACCTCAAGAGTGAT 40366
Query 15328 GGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363
|||||| ||||| |||||||| ||||||||||||||
Sbjct 40367 GGTTTTGCCTGTTAGAGTTTTGACAAAAATTTGCAT 40402
Score = 87.8 bits (96), Expect = 1e-12
Identities = 149/216 (69%), Gaps = 0/216 (0%)
Strand=Plus/Plus
Query 15149 CTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCG 15208
|| || || | |||||| || || || ||||| || ||||||||| ||| | || ||
Sbjct 40416 CTCAAGACGAGATGAAGAGTAGATTCCTTTTGGATATTGTAATCGGCGAGAGTCCTGCCG 40475
Query 15209 TCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTG 15268
|| || || || || || ||| | || | | || || || |||||||| || ||
Sbjct 40476 TCCTCCAACTGCTTCCCGGCGAAGATAAGCCTCTGCTGATCCGGAGGAATTCCCTCCTTA 40535
Query 15269 TCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATG 15328
|| ||| ||| ||| || | || || |||||| | | || || || | |||||
Sbjct 40536 TCCTGAATCTTGGCCTTGACGTTGTCAATTGTATCGGAACTCTCAACTTCAAGAGTAATC 40595
Query 15329 GTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364
|| || || ||||||||||| ||||| || ||||||
Sbjct 40596 GTCTTGCCGGTCAGAGTTTTAACAAATATCTGCATA 40631
>seq65811
Length=66007
Score = 91.5 bits (100), Expect = 1e-13
Identities = 146/210 (70%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214
|| || ||||||||||| || ||||| || ||||| ||| | | | |||| ||
Sbjct 55027 ACCAAGTGAAGGGTGGATTCCTTTTGAATATTGTAGTCGGCCAAGGTGCGGCCGTCCTCG 55086
Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274
| || || || ||| | ||||| | ||| ||||| |||||| ||||| ||||| |
Sbjct 55087 AGCTGCTTACCGGCGAAGATCAATCTTTGCTGGTCTGGTGGAATGCCTTCCTTGTCTTGA 55146
Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334
||||| |||||| | || ||||| ||| | || || || | || ||||| ||
Sbjct 55147 ATTTTAGCCTTTACGTTGTCGATGGTGTCGGAGCTCTCAACTTCGAGCGTGATGGTCTTT 55206
Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCATA 15364
|| |||| || || ||||| |||||||||
Sbjct 55207 CCGGTCAAGGTCTTGACAAAGATTTGCATA 55236
Score = 86.0 bits (94), Expect = 5e-12
Identities = 147/211 (70%), Gaps = 2/211 (1%)
Strand=Plus/Plus
Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAAT-CGCTTAGAATTCTCGCGTCTTC 15213
|| || ||||||||||| || || || |||||||| | ||| || | | |||||||
Sbjct 54799 ACCAAGTGAAGGGTGGATTCCTTCTGAATGTTGTAGTCCGCCAAG-GTGCGGCCGTCTTC 54857
Query 15214 TAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACA 15273
| || || || || | ||||| | || ||||| |||||| || || |||||
Sbjct 54858 AAGCTGCTTTCCGGCAAAGATCAACCTCTGCTGGTCTGGTGGAATACCCTCCTTGTCTTG 54917
Query 15274 AATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTT 15333
||| ||| || || | || ||||| ||| | || || || | ||| ||||||||
Sbjct 54918 AATCTTGGCTTTCACGTTGTCAATGGTGTCGGAGCTCTCAACCTCCAGGGTGATGGTTTT 54977
Query 15334 ACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364
|| || ||||| || ||||| |||||||||
Sbjct 54978 TCCGGTGAGAGTCTTGACAAAGATTTGCATA 55008
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 361829156293182
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