Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Catharanthus_20roseus_20[genbank_20GCA_5F000949345.1_202015-03-06] 79,302 sequences; 522,653,749 total letters Query= NC_004778.3 Length=129593 Score E Sequences producing significant alignments: (Bits) Value seq72241 107 2e-18 seq65811 95.1 1e-14 seq71687 91.5 1e-13 seq73807 87.8 1e-12 >seq72241 Length=55963 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 18815 CCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCC 18874 || ||||| | ||| || || | || | || |||||||| ||||||||||||||||| Sbjct 40176 CCCCCTCGAAGCCTCAAGACAAGATGTAGGGTTGACTCCTTCTGAATATTGTAATCCGCA 40235 Query 18875 ATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGC 18934 | ||| | |||| |||||||| || || || |||| || | ||||||||| || Sbjct 40236 AGGGTTCTACCGTCTTCCAGCTGCTTCCCGGCGAAAATTAGGCGCTGCTGATCAGGAGGA 40295 Query 18935 ACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTT 18994 | || || || || ||| || || || | | | | |||||| | ||| Sbjct 40296 ATTCCTTCCTTATCTTGAATCTTTGCCTTAACGTTGTCAATAGTATCAGAACTTTCCACC 40355 Query 18995 TCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || | || |||||||| ||||||| ||||||||||||||||||||| Sbjct 40356 TCAAGAGTGATGGTTTTGCCTGTTAGAGTTTTGACAAAAATTTGCAT 40402 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 18845 GTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTGTTTACCC 18904 ||||| |||||||| ||||||||||| || | || || ||||||||| ||| || || Sbjct 40434 GTAGATTCCTTTTGGATATTGTAATCGGCGAGAGTCCTGCCGTCCTCCAACTGCTTCCCG 40493 Query 18905 GCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTTCTGTTTT 18964 || | ||||| |||||||||||| || | ||||| || || ||| || || Sbjct 40494 GCGAAGATAAGCCTCTGCTGATCCGGAGGAATTCCCTCCTTATCCTGAATCTTGGCCTTG 40553 Query 18965 ACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTACCTGTTAAAGTT 19024 || | | | | |||||| | ||| ||| | ||||| || || || || | |||| Sbjct 40554 ACGTTGTCAATTGTATCGGAACTCTCAACTTCAAGAGTAATCGTCTTGCCGGTCAGAGTT 40613 Query 19025 TTGACAAAAATTTGCAT 19041 || ||||| || ||||| Sbjct 40614 TTAACAAATATCTGCAT 40630 >seq65811 Length=66007 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 18832 CACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTC 18891 ||||| ||| | || || ||||||||||||||||| || |||| || | ||||||| Sbjct 55026 CACCAAGTGAAGGGTGGATTCCTTTTGAATATTGTAGTCGGCCAAGGTGCGGCCGTCCTC 55085 Query 18892 CAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGC 18951 ||||| ||||| || | || | ||| ||||| || || | ||| || ||||| Sbjct 55086 GAGCTGCTTACCGGCGAAGATCAATCTTTGCTGGTCTGGTGGAATGCCTTCCTTGTCTTG 55145 Query 18952 AATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTT 19011 |||||| ||||| | | ||| || ||| ||| ||||| || ||||| || Sbjct 55146 AATTTTAGCCTTTACGTTGTCGATGGTGTCGGAGCTCTCAACTTCGAGCGTGATGGTCTT 55205 Query 19012 ACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || || || || |||||||| |||||||| Sbjct 55206 TCCGGTCAAGGTCTTGACAAAGATTTGCAT 55235 Score = 82.4 bits (90), Expect = 6e-11 Identities = 86/113 (76%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 18815 CCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCC 18874 ||||| | ||| | | |||| ||| | ||||||||||||||||| ||||||||||| Sbjct 55237 CCTCCCCTCAAACGGAGGACCAAGTGGAGGGTAGACTCCTTTTGAATGTTGTAATCCGCA 55296 Query 18875 ATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATC 18927 | ||| || ||||||| ||||| || || ||| | || || || ||||| || Sbjct 55297 AGGGTTCTGCCGTCCTCGAGCTGCTTTCCGGCAAAGATCAGCCTTTGCTGGTC 55349 >seq71687 Length=64904 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 18815 CCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCC 18874 || || ||||| | | |||| ||||| || |||||||| || || ||||||||||| Sbjct 44686 CCACCGCGCAAGCGAAGGACCAGGTGCAGTGTCGACTCCTTCTGGATGTTGTAATCCGCT 44745 Query 18875 ATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGC 18934 | || || | ||||| ||||| || || ||| | || || |||||||||||| || Sbjct 44746 AAGGTCCTGCCTTCCTCGAGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGATCCGGTGGG 44805 Query 18935 ACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTT 18994 | ||| || || || || ||| || || | | | | |||||| | || Sbjct 44806 ATGCCTTCCTTATCTTGGATCTTCGCCTTCACATTGTCAATGGTATCGGAGGATTCAACC 44865 Query 18995 TCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCATTTT 19044 |||| ||||||||| ||||| || | ||||| || || || ||||| || Sbjct 44866 TCGAGGGTAATGGTCTTACCCGTCAGGGTTTTCACGAAGATCTGCATCTT 44915 >seq73807 Length=69832 Score = 87.8 bits (96), Expect = 1e-12 Identities = 159/230 (69%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 18815 CCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCC 18874 ||||| | ||| | ||||||| |||| || ||||||||||| || || ||||| || Sbjct 38928 CCTCCCCTCAAACGCAACACCAAATGCAGAGTTGACTCCTTTTGGATGTTATAATCAGCA 38987 Query 18875 ATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGC 18934 | ||| | | ||||| ||||||||||| ||| | || || | |||||| || ||| Sbjct 38988 AGTGTCCTACCATCCTCAAGCTGTTTACCGGCAAATATCAGACGCTGCTGGTCAGGGGGA 39047 Query 18935 ACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAG-GC--TCC 18991 | ||| |||||||| ||| || || || | | | |||| ||| || || Sbjct 39048 ATGCCTTCTTTGTCTTGAATCTTAGCCTTAACGTTATCAATCGTAT---CAGAGCTTTCT 39104 Query 18992 GTTTCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 ||| | ||||| ||| || || || | ||| |||||||| || ||||| Sbjct 39105 ACTTCTAGGGTAACGGTCTTCCCAGTAAGAGTCTTGACAAAGATCTGCAT 39154 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414172118238988