Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Catharanthus_20roseus_20[genbank_20GCA_5F000949345.1_202015-03-06]
79,302 sequences; 522,653,749 total letters
Query= NC_004778.3
Length=129593
Score E
Sequences producing significant alignments: (Bits) Value
seq72241 107 2e-18
seq65811 95.1 1e-14
seq71687 91.5 1e-13
seq73807 87.8 1e-12
>seq72241
Length=55963
Score = 107 bits (118), Expect = 2e-18
Identities = 160/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 18815 CCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCC 18874
|| ||||| | ||| || || | || | || |||||||| |||||||||||||||||
Sbjct 40176 CCCCCTCGAAGCCTCAAGACAAGATGTAGGGTTGACTCCTTCTGAATATTGTAATCCGCA 40235
Query 18875 ATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGC 18934
| ||| | |||| |||||||| || || || |||| || | ||||||||| ||
Sbjct 40236 AGGGTTCTACCGTCTTCCAGCTGCTTCCCGGCGAAAATTAGGCGCTGCTGATCAGGAGGA 40295
Query 18935 ACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTT 18994
| || || || || ||| || || || | | | | |||||| | |||
Sbjct 40296 ATTCCTTCCTTATCTTGAATCTTTGCCTTAACGTTGTCAATAGTATCAGAACTTTCCACC 40355
Query 18995 TCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041
|| | || |||||||| ||||||| |||||||||||||||||||||
Sbjct 40356 TCAAGAGTGATGGTTTTGCCTGTTAGAGTTTTGACAAAAATTTGCAT 40402
Score = 89.7 bits (98), Expect = 4e-13
Identities = 138/197 (70%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 18845 GTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTGTTTACCC 18904
||||| |||||||| ||||||||||| || | || || ||||||||| ||| || ||
Sbjct 40434 GTAGATTCCTTTTGGATATTGTAATCGGCGAGAGTCCTGCCGTCCTCCAACTGCTTCCCG 40493
Query 18905 GCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTTCTGTTTT 18964
|| | ||||| |||||||||||| || | ||||| || || ||| || ||
Sbjct 40494 GCGAAGATAAGCCTCTGCTGATCCGGAGGAATTCCCTCCTTATCCTGAATCTTGGCCTTG 40553
Query 18965 ACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTACCTGTTAAAGTT 19024
|| | | | | |||||| | ||| ||| | ||||| || || || || | ||||
Sbjct 40554 ACGTTGTCAATTGTATCGGAACTCTCAACTTCAAGAGTAATCGTCTTGCCGGTCAGAGTT 40613
Query 19025 TTGACAAAAATTTGCAT 19041
|| ||||| || |||||
Sbjct 40614 TTAACAAATATCTGCAT 40630
>seq65811
Length=66007
Score = 95.1 bits (104), Expect = 1e-14
Identities = 147/210 (70%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 18832 CACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTC 18891
||||| ||| | || || ||||||||||||||||| || |||| || | |||||||
Sbjct 55026 CACCAAGTGAAGGGTGGATTCCTTTTGAATATTGTAGTCGGCCAAGGTGCGGCCGTCCTC 55085
Query 18892 CAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGC 18951
||||| ||||| || | || | ||| ||||| || || | ||| || |||||
Sbjct 55086 GAGCTGCTTACCGGCGAAGATCAATCTTTGCTGGTCTGGTGGAATGCCTTCCTTGTCTTG 55145
Query 18952 AATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTT 19011
|||||| ||||| | | ||| || ||| ||| ||||| || ||||| ||
Sbjct 55146 AATTTTAGCCTTTACGTTGTCGATGGTGTCGGAGCTCTCAACTTCGAGCGTGATGGTCTT 55205
Query 19012 ACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041
|| || || || |||||||| ||||||||
Sbjct 55206 TCCGGTCAAGGTCTTGACAAAGATTTGCAT 55235
Score = 82.4 bits (90), Expect = 6e-11
Identities = 86/113 (76%), Gaps = 0/113 (0%)
Strand=Plus/Plus
Query 18815 CCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCC 18874
||||| | ||| | | |||| ||| | ||||||||||||||||| |||||||||||
Sbjct 55237 CCTCCCCTCAAACGGAGGACCAAGTGGAGGGTAGACTCCTTTTGAATGTTGTAATCCGCA 55296
Query 18875 ATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATC 18927
| ||| || ||||||| ||||| || || ||| | || || || ||||| ||
Sbjct 55297 AGGGTTCTGCCGTCCTCGAGCTGCTTTCCGGCAAAGATCAGCCTTTGCTGGTC 55349
>seq71687
Length=64904
Score = 91.5 bits (100), Expect = 1e-13
Identities = 158/230 (69%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 18815 CCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCC 18874
|| || ||||| | | |||| ||||| || |||||||| || || |||||||||||
Sbjct 44686 CCACCGCGCAAGCGAAGGACCAGGTGCAGTGTCGACTCCTTCTGGATGTTGTAATCCGCT 44745
Query 18875 ATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGC 18934
| || || | ||||| ||||| || || ||| | || || |||||||||||| ||
Sbjct 44746 AAGGTCCTGCCTTCCTCGAGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGATCCGGTGGG 44805
Query 18935 ACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTT 18994
| ||| || || || || ||| || || | | | | |||||| | ||
Sbjct 44806 ATGCCTTCCTTATCTTGGATCTTCGCCTTCACATTGTCAATGGTATCGGAGGATTCAACC 44865
Query 18995 TCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCATTTT 19044
|||| ||||||||| ||||| || | ||||| || || || ||||| ||
Sbjct 44866 TCGAGGGTAATGGTCTTACCCGTCAGGGTTTTCACGAAGATCTGCATCTT 44915
>seq73807
Length=69832
Score = 87.8 bits (96), Expect = 1e-12
Identities = 159/230 (69%), Gaps = 6/230 (3%)
Strand=Plus/Plus
Query 18815 CCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCC 18874
||||| | ||| | ||||||| |||| || ||||||||||| || || ||||| ||
Sbjct 38928 CCTCCCCTCAAACGCAACACCAAATGCAGAGTTGACTCCTTTTGGATGTTATAATCAGCA 38987
Query 18875 ATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGC 18934
| ||| | | ||||| ||||||||||| ||| | || || | |||||| || |||
Sbjct 38988 AGTGTCCTACCATCCTCAAGCTGTTTACCGGCAAATATCAGACGCTGCTGGTCAGGGGGA 39047
Query 18935 ACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAG-GC--TCC 18991
| ||| |||||||| ||| || || || | | | |||| ||| || ||
Sbjct 39048 ATGCCTTCTTTGTCTTGAATCTTAGCCTTAACGTTATCAATCGTAT---CAGAGCTTTCT 39104
Query 18992 GTTTCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041
||| | ||||| ||| || || || | ||| |||||||| || |||||
Sbjct 39105 ACTTCTAGGGTAACGGTCTTCCCAGTAAGAGTCTTGACAAAGATCTGCAT 39154
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 414172118238988
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |