Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Catharanthus_20roseus_20[genbank_20GCA_5F000949345.1_202015-03-06] 79,302 sequences; 522,653,749 total letters Query= NC_005038.1 Length=99657 Score E Sequences producing significant alignments: (Bits) Value seq42370 86.0 4e-12 >seq42370 Length=41228 Score = 86.0 bits (94), Expect = 4e-12 Identities = 155/223 (70%), Gaps = 14/223 (6%) Strand=Plus/Minus Query 33154 CCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTG 33213 || ||| || | ||| | |||||||||||||| ||||||||||| | ||| |||| Sbjct 10193 CCTCAAGACGAGATGAAGGGTCGACTCTTTTTGAATATTGTAATC-GGCAA---GAGTCC 10138 Query 33214 G----TCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTT 33269 | || ||||||||||| ||| ||| || | | ||||||||||| || || |||| Sbjct 10137 GGCCATCCTCCAATTGCTTCCCAGCAAAGATGAGCCTTTGCTGGTCCGGAGGGATCCCTT 10078 Query 33270 CTTTTTCGCTAA---TCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCA 33326 | || || || | ||| || || | | ||| |||||| | ||| || | Sbjct 10077 CCTTATCCTGAATTTTAGCC---TTGACGTTGTCAATAGTGTCGGAACTCTCAACCTCGA 10021 Query 33327 GAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 |||| ||||| ||||| || || ||||| || || || ||||| Sbjct 10020 GAGTAATCGTCTTTCCGGTTAGGGTTTTAACAAATATCTGCAT 9978 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 318469503641196